Wall clock time and date at job start Wed Apr 1 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47069 * 264.54033 * 3 2 1 5 5 H 1.48500 * 109.47199 * 24.53990 * 3 2 1 6 6 H 1.48501 * 109.47008 * 144.54062 * 3 2 1 7 7 C 1.38815 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99617 * 337.62624 * 7 2 1 9 9 N 1.36934 * 120.00193 * 157.62690 * 7 2 1 10 10 C 1.47422 * 125.64873 * 341.47655 * 9 7 2 11 11 C 1.54906 * 104.83245 * 204.16322 * 10 9 7 12 12 C 1.55159 * 101.58585 * 322.99380 * 11 10 9 13 13 O 1.42899 * 110.87375 * 277.06625 * 12 11 10 14 14 C 1.52995 * 110.72055 * 153.86292 * 12 11 10 15 15 N 1.46496 * 109.47088 * 190.02776 * 14 12 11 16 16 C 1.34774 * 120.00137 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00382 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00030 * 179.97438 * 16 15 14 19 19 N 1.46505 * 109.47001 * 180.02562 * 18 16 15 20 20 C 1.34949 * 126.03805 * 124.71223 * 19 18 16 21 21 C 1.35319 * 107.74615 * 179.83769 * 20 19 18 22 22 C 1.39868 * 107.91994 * 0.42772 * 21 20 19 23 23 C 1.50701 * 125.89955 * 179.71491 * 22 21 20 24 24 F 1.39901 * 109.46958 * 210.00369 * 23 22 21 25 25 F 1.39902 * 109.46684 * 329.99761 * 23 22 21 26 26 N 1.30838 * 108.20178 * 359.73857 * 22 21 20 27 27 C 1.47023 * 125.64918 * 161.52577 * 9 7 2 28 28 H 0.97002 * 120.00380 * 359.97438 * 1 2 3 29 29 H 1.08994 * 110.36891 * 323.00735 * 10 9 7 30 30 H 1.09009 * 110.36354 * 85.33192 * 10 9 7 31 31 H 1.09002 * 111.00802 * 204.92072 * 11 10 9 32 32 H 1.08996 * 111.00309 * 81.07124 * 11 10 9 33 33 H 0.96698 * 113.99859 * 177.44993 * 13 12 11 34 34 H 1.09005 * 109.47133 * 70.02369 * 14 12 11 35 35 H 1.09003 * 109.47237 * 310.02440 * 14 12 11 36 36 H 0.97001 * 119.99940 * 0.02562 * 15 14 12 37 37 H 1.08991 * 109.47240 * 60.00500 * 18 16 15 38 38 H 1.08997 * 109.47229 * 299.99677 * 18 16 15 39 39 H 1.08002 * 126.12420 * 0.02562 * 20 19 18 40 40 H 1.07998 * 126.03718 * 180.15946 * 21 20 19 41 41 H 1.08997 * 109.47211 * 89.99958 * 23 22 21 42 42 H 1.08999 * 109.88290 * 59.47986 * 27 9 7 43 43 H 1.08999 * 110.00809 * 298.39475 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6129 1.9798 -1.3937 5 1 1.3946 2.6833 0.5815 6 1 3.4852 1.4763 0.8122 7 6 2.0103 -1.2021 -0.0005 8 1 1.5312 -2.1024 0.3551 9 7 3.3023 -1.2465 -0.4519 10 6 3.9505 -0.2320 -1.3028 11 6 5.0952 -0.9894 -2.0209 12 6 5.5799 -1.9523 -0.9049 13 8 6.4903 -1.2924 -0.0231 14 6 6.2244 -3.2011 -1.5097 15 7 6.4535 -4.1918 -0.4551 16 6 7.0154 -5.3792 -0.7564 17 8 7.3309 -5.6278 -1.9008 18 6 7.2517 -6.3980 0.3286 19 7 7.8687 -7.5940 -0.2505 20 6 9.0274 -8.1609 0.1461 21 6 9.2459 -9.2434 -0.6359 22 6 8.1894 -9.3357 -1.5479 23 6 8.0304 -10.3908 -2.6121 24 9 7.3372 -9.8532 -3.7019 25 9 9.2928 -10.8249 -3.0307 26 7 7.3634 -8.3475 -1.3179 27 6 4.2726 -2.3143 -0.1691 28 1 -0.4851 0.8400 0.0004 29 1 3.2412 0.1620 -2.0306 30 1 4.3547 0.5743 -0.6907 31 1 5.8898 -0.3053 -2.3189 32 1 4.7178 -1.5449 -2.8794 33 1 6.7915 -1.8411 0.7140 34 1 7.1757 -2.9328 -1.9692 35 1 5.5616 -3.6222 -2.2658 36 1 6.2002 -3.9934 0.4600 37 1 6.3007 -6.6661 0.7887 38 1 7.9151 -5.9771 1.0841 39 1 9.6644 -7.8145 0.9465 40 1 10.0893 -9.9146 -0.5705 41 1 7.4720 -11.2345 -2.2066 42 1 3.8923 -3.2676 -0.5362 43 1 4.4561 -2.3770 0.9035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754754892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:09 Heat of formation + Delta-G solvation = -62.022360 kcal Electronic energy + Delta-G solvation = -29783.648785 eV Core-core repulsion = 25117.080030 eV Total energy + Delta-G solvation = -4666.568755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.22426 -47.24885 -41.71450 -40.09815 -38.77357 -35.51045 -34.47749 -34.09162 -32.30984 -30.82919 -30.27304 -29.39216 -28.43602 -26.60225 -25.52554 -23.44104 -21.77870 -21.45983 -21.00648 -20.37935 -20.15247 -18.20866 -17.95044 -17.70818 -17.23981 -17.15446 -16.69986 -16.27667 -15.99772 -15.49646 -15.35364 -14.90633 -14.53583 -14.26573 -14.18607 -14.07040 -13.84486 -13.72926 -13.58502 -13.54598 -13.18805 -13.04074 -12.98791 -12.47755 -12.20398 -11.94743 -11.72902 -11.69827 -11.26508 -11.10648 -11.08168 -10.88087 -10.46340 -10.17293 -10.13381 -9.83472 -9.74465 -9.49124 -9.35546 -9.07296 -8.75624 -7.13368 -6.00778 -3.32573 1.33337 1.79086 2.16908 2.24295 2.77127 3.31869 3.39851 3.45744 3.49423 3.80235 4.01807 4.15558 4.19909 4.30337 4.48757 4.50878 4.54098 4.55771 4.59796 4.86256 4.98805 5.05385 5.11026 5.24225 5.34667 5.46757 5.53794 5.68157 5.77808 5.95743 5.96721 6.05020 6.12069 6.25883 6.30671 6.43311 6.55948 6.67805 7.09054 7.14354 7.60637 7.65268 7.85397 8.23913 8.74856 9.61628 10.08559 11.14859 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002068 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.361503 B =13535.762280 C =13841.751326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.604 5.604 10 C 0.113 3.887 11 C -0.114 4.114 12 C 0.104 3.896 13 O -0.544 6.544 14 C 0.107 3.893 15 N -0.725 5.725 16 C 0.498 3.502 17 O -0.507 6.507 18 C 0.113 3.887 19 N -0.352 5.352 20 C 0.058 3.942 21 C -0.241 4.241 22 C -0.016 4.016 23 C 0.361 3.639 24 F -0.189 7.189 25 F -0.192 7.192 26 N -0.220 5.220 27 C 0.115 3.885 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.368 0.632 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.401 0.599 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.182 0.818 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.042 0.958 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.699 -18.245 2.760 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.331 5.331 10 C -0.012 4.012 11 C -0.153 4.153 12 C 0.063 3.937 13 O -0.348 6.348 14 C -0.017 4.017 15 N -0.379 5.379 16 C 0.282 3.718 17 O -0.381 6.381 18 C -0.013 4.013 19 N -0.135 5.135 20 C -0.086 4.086 21 C -0.271 4.271 22 C -0.184 4.184 23 C 0.306 3.694 24 F -0.170 7.170 25 F -0.174 7.174 26 N -0.043 5.043 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.215 0.785 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.236 0.764 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.200 0.800 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.059 0.941 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.445 -17.138 1.215 25.948 hybrid contribution 1.185 0.437 1.210 1.749 sum 20.630 -16.701 2.425 26.653 Atomic orbital electron populations 1.69837 1.05560 1.26728 1.52821 1.24994 0.95163 0.97487 0.99863 0.86978 0.79190 0.84542 0.77944 1.21132 1.22997 1.20061 1.18601 0.84137 0.95477 1.39147 0.89070 1.44672 1.09587 1.21977 1.56870 1.21979 0.93191 0.92666 0.93334 1.22756 0.98662 0.98004 0.95870 1.22526 0.88701 0.90864 0.91641 1.86622 1.64148 1.43147 1.40919 1.22074 1.01663 0.87525 0.90425 1.45882 1.63403 1.16001 1.12580 1.20416 0.78664 0.82603 0.90164 1.90835 1.49315 1.77229 1.20694 1.21608 1.02219 0.82574 0.94856 1.48102 1.17832 1.21618 1.25933 1.22605 0.89470 0.95317 1.01240 1.21195 1.02565 1.02975 1.00323 1.22820 0.97191 0.98117 1.00240 1.19412 0.77735 0.91990 0.80310 1.93061 1.78927 1.88019 1.57032 1.93017 1.43154 1.90114 1.91083 1.77518 1.21442 1.03659 1.01680 1.21987 0.88621 0.93553 0.96971 0.92602 0.91984 0.94963 0.90274 0.89471 0.78536 0.90440 0.89872 0.76428 0.86045 0.85145 0.80048 0.82578 0.85215 0.94063 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.97 55.49 0.78 -26.89 16 2 C 0.02 0.69 5.43 -17.43 -0.09 0.60 16 3 Si 0.88 22.50 24.27 -169.99 -4.13 18.37 16 4 H -0.28 -6.97 6.49 56.52 0.37 -6.60 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.98 6.66 56.52 0.38 -6.61 16 7 C -0.25 -6.86 10.57 -15.06 -0.16 -7.02 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.60 -14.13 3.21 -170.08 -0.55 -14.67 16 10 C 0.11 2.43 4.68 -2.53 -0.01 2.42 16 11 C -0.11 -1.87 6.26 -24.58 -0.15 -2.02 16 12 C 0.10 1.51 0.93 -88.79 -0.08 1.43 16 13 O -0.54 -7.55 13.10 -35.23 -0.46 -8.01 16 14 C 0.11 1.32 4.80 -4.05 -0.02 1.30 16 15 N -0.72 -6.91 5.13 -60.29 -0.31 -7.22 16 16 C 0.50 5.44 7.86 -10.98 -0.09 5.35 16 17 O -0.51 -8.21 15.71 5.55 0.09 -8.12 16 18 C 0.11 0.76 6.99 -5.19 -0.04 0.72 16 19 N -0.35 -3.44 3.40 -62.54 -0.21 -3.66 16 20 C 0.06 0.42 11.45 -17.22 -0.20 0.23 16 21 C -0.24 -2.04 10.42 -40.01 -0.42 -2.46 16 22 C -0.02 -0.17 6.85 -82.41 -0.56 -0.74 16 23 C 0.36 3.31 5.84 36.01 0.21 3.52 16 24 F -0.19 -2.36 17.27 2.25 0.04 -2.32 16 25 F -0.19 -1.84 17.06 2.25 0.04 -1.80 16 26 N -0.22 -2.90 11.57 33.67 0.39 -2.51 16 27 C 0.11 2.03 5.76 -3.07 -0.02 2.02 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.06 1.42 6.63 -51.93 -0.34 1.07 16 30 H 0.03 0.74 5.58 -51.92 -0.29 0.45 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.32 7.96 -51.93 -0.41 0.91 16 33 H 0.37 3.43 8.44 45.56 0.38 3.81 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 36 H 0.40 2.69 7.47 -40.82 -0.30 2.39 16 37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.13 0.28 8.07 -51.93 -0.42 -0.13 16 39 H 0.18 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 43 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -39.74 365.90 -5.23 -44.97 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.78 Total: 1.00 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.63 Total: 5.34 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.10 Total: -54.94 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.37 Total: -16.13 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.74 -5.23 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754754892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.056 kcal (2) G-P(sol) polarization free energy of solvation -39.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds