Wall clock time and date at job start Wed Apr 1 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47069 * 264.54033 * 3 2 1 5 5 H 1.48500 * 109.47199 * 24.53990 * 3 2 1 6 6 H 1.48501 * 109.47008 * 144.54062 * 3 2 1 7 7 C 1.38815 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99617 * 337.62624 * 7 2 1 9 9 N 1.36934 * 120.00193 * 157.62690 * 7 2 1 10 10 C 1.47422 * 125.64873 * 341.47655 * 9 7 2 11 11 C 1.54906 * 104.83245 * 204.16322 * 10 9 7 12 12 C 1.55159 * 101.58585 * 322.99380 * 11 10 9 13 13 O 1.42899 * 110.87375 * 277.06625 * 12 11 10 14 14 C 1.52995 * 110.72055 * 153.86292 * 12 11 10 15 15 N 1.46496 * 109.47088 * 190.02776 * 14 12 11 16 16 C 1.34774 * 120.00137 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00382 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00030 * 179.97438 * 16 15 14 19 19 N 1.46505 * 109.47001 * 180.02562 * 18 16 15 20 20 C 1.34949 * 126.03805 * 124.71223 * 19 18 16 21 21 C 1.35319 * 107.74615 * 179.83769 * 20 19 18 22 22 C 1.39868 * 107.91994 * 0.42772 * 21 20 19 23 23 C 1.50701 * 125.89955 * 179.71491 * 22 21 20 24 24 F 1.39901 * 109.46958 * 210.00369 * 23 22 21 25 25 F 1.39902 * 109.46684 * 329.99761 * 23 22 21 26 26 N 1.30838 * 108.20178 * 359.73857 * 22 21 20 27 27 C 1.47023 * 125.64918 * 161.52577 * 9 7 2 28 28 H 0.97002 * 120.00380 * 359.97438 * 1 2 3 29 29 H 1.08994 * 110.36891 * 323.00735 * 10 9 7 30 30 H 1.09009 * 110.36354 * 85.33192 * 10 9 7 31 31 H 1.09002 * 111.00802 * 204.92072 * 11 10 9 32 32 H 1.08996 * 111.00309 * 81.07124 * 11 10 9 33 33 H 0.96698 * 113.99859 * 177.44993 * 13 12 11 34 34 H 1.09005 * 109.47133 * 70.02369 * 14 12 11 35 35 H 1.09003 * 109.47237 * 310.02440 * 14 12 11 36 36 H 0.97001 * 119.99940 * 0.02562 * 15 14 12 37 37 H 1.08991 * 109.47240 * 60.00500 * 18 16 15 38 38 H 1.08997 * 109.47229 * 299.99677 * 18 16 15 39 39 H 1.08002 * 126.12420 * 0.02562 * 20 19 18 40 40 H 1.07998 * 126.03718 * 180.15946 * 21 20 19 41 41 H 1.08997 * 109.47211 * 89.99958 * 23 22 21 42 42 H 1.08999 * 109.88290 * 59.47986 * 27 9 7 43 43 H 1.08999 * 110.00809 * 298.39475 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6129 1.9798 -1.3937 5 1 1.3946 2.6833 0.5815 6 1 3.4852 1.4763 0.8122 7 6 2.0103 -1.2021 -0.0005 8 1 1.5312 -2.1024 0.3551 9 7 3.3023 -1.2465 -0.4519 10 6 3.9505 -0.2320 -1.3028 11 6 5.0952 -0.9894 -2.0209 12 6 5.5799 -1.9523 -0.9049 13 8 6.4903 -1.2924 -0.0231 14 6 6.2244 -3.2011 -1.5097 15 7 6.4535 -4.1918 -0.4551 16 6 7.0154 -5.3792 -0.7564 17 8 7.3309 -5.6278 -1.9008 18 6 7.2517 -6.3980 0.3286 19 7 7.8687 -7.5940 -0.2505 20 6 9.0274 -8.1609 0.1461 21 6 9.2459 -9.2434 -0.6359 22 6 8.1894 -9.3357 -1.5479 23 6 8.0304 -10.3908 -2.6121 24 9 7.3372 -9.8532 -3.7019 25 9 9.2928 -10.8249 -3.0307 26 7 7.3634 -8.3475 -1.3179 27 6 4.2726 -2.3143 -0.1691 28 1 -0.4851 0.8400 0.0004 29 1 3.2412 0.1620 -2.0306 30 1 4.3547 0.5743 -0.6907 31 1 5.8898 -0.3053 -2.3189 32 1 4.7178 -1.5449 -2.8794 33 1 6.7915 -1.8411 0.7140 34 1 7.1757 -2.9328 -1.9692 35 1 5.5616 -3.6222 -2.2658 36 1 6.2002 -3.9934 0.4600 37 1 6.3007 -6.6661 0.7887 38 1 7.9151 -5.9771 1.0841 39 1 9.6644 -7.8145 0.9465 40 1 10.0893 -9.9146 -0.5705 41 1 7.4720 -11.2345 -2.2066 42 1 3.8923 -3.2676 -0.5362 43 1 4.4561 -2.3770 0.9035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754754892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:08 Heat of formation + Delta-G solvation = -95.805699 kcal Electronic energy + Delta-G solvation = -29785.113740 eV Core-core repulsion = 25117.080030 eV Total energy + Delta-G solvation = -4668.033711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.98562 -48.03357 -42.34385 -41.10999 -39.95828 -36.98646 -35.44869 -34.73988 -34.25182 -31.91156 -31.33261 -30.45568 -29.52234 -27.85284 -26.56540 -24.90323 -22.99470 -22.33414 -21.95967 -21.41113 -21.20450 -19.08771 -18.93854 -18.59981 -18.42383 -17.98979 -17.70389 -17.37034 -17.09520 -16.78433 -16.33762 -15.98748 -15.94253 -15.54481 -15.24377 -14.95692 -14.91266 -14.61962 -14.45527 -14.38992 -14.28015 -14.17913 -13.85846 -13.73247 -13.59234 -13.33913 -13.19845 -12.96539 -12.76297 -12.37340 -12.21791 -12.06631 -11.88653 -11.74963 -11.50962 -11.26002 -11.04111 -10.85108 -10.47279 -10.26550 -9.68565 -9.10049 -8.21332 -5.48225 0.70215 1.25660 1.28977 1.37403 1.46010 1.46445 1.55752 2.01224 2.38660 2.78900 2.94819 3.13062 3.16393 3.19215 3.41656 3.50001 3.61316 3.70220 3.74117 3.90124 3.96588 4.06474 4.15964 4.30959 4.32798 4.54206 4.60375 4.70501 4.71604 4.73783 4.81675 4.90208 4.90721 5.02790 5.12402 5.22524 5.35821 5.62885 5.94244 6.06585 6.36873 6.49934 6.71025 6.76899 7.09348 7.49686 8.05611 8.98132 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002068 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.361503 B =13535.762280 C =13841.751326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.308 1.308 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.063 0.937 9 N -0.625 5.625 10 C 0.105 3.895 11 C -0.110 4.110 12 C 0.128 3.872 13 O -0.552 6.552 14 C 0.121 3.879 15 N -0.712 5.712 16 C 0.497 3.503 17 O -0.566 6.566 18 C 0.112 3.888 19 N -0.360 5.360 20 C 0.072 3.928 21 C -0.258 4.258 22 C -0.032 4.032 23 C 0.354 3.646 24 F -0.214 7.214 25 F -0.197 7.197 26 N -0.283 5.283 27 C 0.109 3.891 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.418 0.582 37 H 0.141 0.859 38 H 0.186 0.814 39 H 0.231 0.769 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.042 0.958 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.910 -18.574 4.481 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.230 4.230 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.236 1.236 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.081 0.919 9 N -0.352 5.352 10 C -0.019 4.019 11 C -0.149 4.149 12 C 0.086 3.914 13 O -0.359 6.359 14 C -0.004 4.004 15 N -0.367 5.367 16 C 0.282 3.718 17 O -0.443 6.443 18 C -0.011 4.011 19 N -0.143 5.143 20 C -0.072 4.072 21 C -0.287 4.287 22 C -0.199 4.199 23 C 0.299 3.701 24 F -0.195 7.195 25 F -0.178 7.178 26 N -0.107 5.107 27 C -0.016 4.016 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.240 0.760 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.255 0.745 37 H 0.159 0.841 38 H 0.203 0.797 39 H 0.247 0.753 40 H 0.193 0.807 41 H 0.188 0.812 42 H 0.060 0.940 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.702 -17.486 2.976 28.809 hybrid contribution 0.229 0.450 0.726 0.884 sum 22.931 -17.036 3.702 28.805 Atomic orbital electron populations 1.69959 1.07126 1.27294 1.55696 1.25607 0.95760 1.00660 1.00966 0.85974 0.77707 0.80501 0.78412 1.19876 1.23635 1.19599 1.18575 0.86161 0.94349 1.37245 0.91887 1.44780 1.09294 1.23704 1.57386 1.22024 0.94253 0.92783 0.92862 1.22741 0.97395 0.98431 0.96324 1.22127 0.87499 0.91086 0.90722 1.86590 1.63523 1.44024 1.41807 1.21730 1.01088 0.86971 0.90630 1.45722 1.62824 1.15328 1.12781 1.21178 0.77231 0.82988 0.90375 1.90822 1.51818 1.78315 1.23384 1.21987 1.04730 0.80632 0.93787 1.48357 1.18580 1.21993 1.25395 1.23404 0.88498 0.94107 1.01192 1.21574 1.02685 1.04195 1.00251 1.23176 0.97871 0.98026 1.00869 1.19935 0.77730 0.93054 0.79344 1.93002 1.79513 1.88576 1.58408 1.92997 1.43576 1.90081 1.91134 1.77420 1.23673 1.05332 1.04233 1.22222 0.89065 0.91779 0.98487 0.92822 0.94091 0.95786 0.88065 0.88563 0.75966 0.90105 0.91588 0.74471 0.84142 0.79661 0.75254 0.80740 0.81176 0.93972 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.97 21.65 0.30 -59.65 16 2 C -0.04 -2.06 5.43 84.86 0.46 -1.60 16 3 Si 0.94 47.07 24.27 68.60 1.66 48.74 16 4 H -0.27 -12.89 6.49 99.48 0.65 -12.24 16 5 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 6 H -0.27 -13.11 6.66 99.48 0.66 -12.45 16 7 C -0.23 -13.24 10.57 84.03 0.89 -12.35 16 8 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 9 N -0.62 -28.76 3.21 -692.00 -2.22 -30.98 16 10 C 0.11 4.39 4.68 86.85 0.41 4.80 16 11 C -0.11 -3.36 6.26 31.99 0.20 -3.16 16 12 C 0.13 3.33 0.93 -9.61 -0.01 3.32 16 13 O -0.55 -13.11 13.10 -148.98 -1.95 -15.06 16 14 C 0.12 2.69 4.80 86.38 0.41 3.10 16 15 N -0.71 -11.41 5.13 -463.06 -2.38 -13.78 16 16 C 0.50 9.67 7.86 87.66 0.69 10.36 16 17 O -0.57 -17.96 15.71 -3.04 -0.05 -18.01 16 18 C 0.11 1.09 6.99 85.63 0.60 1.69 16 19 N -0.36 -6.13 3.40 -351.79 -1.20 -7.33 16 20 C 0.07 0.80 11.45 83.54 0.96 1.76 16 21 C -0.26 -3.83 10.42 21.99 0.23 -3.60 16 22 C -0.03 -0.69 6.85 43.10 0.30 -0.39 16 23 C 0.35 6.43 5.84 71.24 0.42 6.84 16 24 F -0.21 -5.53 17.27 44.97 0.78 -4.76 16 25 F -0.20 -3.69 17.06 44.97 0.77 -2.92 16 26 N -0.28 -7.33 11.57 -47.38 -0.55 -7.88 16 27 C 0.11 3.65 5.76 86.73 0.50 4.15 16 28 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.04 1.85 6.63 -2.39 -0.02 1.84 16 30 H 0.02 1.06 5.58 -2.38 -0.01 1.05 16 31 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.10 2.75 7.96 -2.39 -0.02 2.73 16 33 H 0.39 5.41 8.44 -74.06 -0.62 4.78 16 34 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 36 H 0.42 3.90 7.47 -92.71 -0.69 3.21 16 37 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.19 -0.33 8.07 -2.39 -0.02 -0.35 16 39 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 40 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 43 H 0.05 1.52 8.07 -2.39 -0.02 1.50 16 Total: -1.00 -91.94 365.90 0.87 -91.07 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -0.35 Total: 5.65 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 6.05 Total: 14.92 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -6.04 Total: -119.63 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -2.00 Total: -33.07 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 1.54 Total: -7.68 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.66 Total: 48.74 kcal Total: -91.94 0.87 -91.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754754892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.735 kcal (2) G-P(sol) polarization free energy of solvation -91.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds