Wall clock time and date at job start Wed Apr 1 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30173 * 126.79830 * 2 1 4 4 O 1.20922 * 111.59968 * 180.02562 * 3 2 1 5 5 C 1.34036 * 111.56957 * 359.76259 * 4 3 2 6 6 C 1.50706 * 126.77594 * 180.28591 * 5 4 3 7 7 C 1.35454 * 106.44785 * 0.38257 * 5 4 3 8 8 C 1.50699 * 128.00887 * 179.91231 * 7 5 4 9 9 C 1.52996 * 109.47154 * 269.67448 * 8 7 5 10 10 C 1.50699 * 109.47154 * 180.02562 * 9 8 7 11 11 O 1.21273 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99654 * 180.02562 * 10 9 8 13 13 C 1.46511 * 119.99667 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46873 * 179.97438 * 13 12 10 15 15 C 1.38303 * 119.92751 * 269.72340 * 14 13 12 16 16 C 1.38101 * 120.06660 * 179.72826 * 15 14 13 17 17 C 1.38876 * 119.92606 * 0.57177 * 16 15 14 18 18 O 1.35757 * 120.06683 * 179.68363 * 17 16 15 19 19 C 1.34832 * 117.00048 * 174.48364 * 18 17 16 20 20 H 1.08004 * 120.00074 * 5.05687 * 19 18 17 21 21 C 1.38650 * 119.99780 * 185.05547 * 19 18 17 22 22 N 1.31558 * 119.99911 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00294 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47104 * 90.00027 * 23 21 19 25 25 H 1.48502 * 109.47370 * 209.99890 * 23 21 19 26 26 H 1.48501 * 109.47001 * 330.00045 * 23 21 19 27 27 C 1.38881 * 119.86675 * 359.69738 * 17 16 15 28 28 C 1.38094 * 119.92855 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47230 * 269.97659 * 1 2 3 30 30 H 1.09003 * 109.46853 * 29.97737 * 1 2 3 31 31 H 1.09004 * 109.46850 * 149.97420 * 1 2 3 32 32 H 1.09000 * 109.46976 * 270.10437 * 6 5 4 33 33 H 1.08988 * 109.47196 * 30.11640 * 6 5 4 34 34 H 1.09004 * 109.46871 * 150.11211 * 6 5 4 35 35 H 1.09001 * 109.46996 * 149.67650 * 8 7 5 36 36 H 1.09003 * 109.46658 * 29.67811 * 8 7 5 37 37 H 1.09006 * 109.47018 * 59.99728 * 9 8 7 38 38 H 1.08997 * 109.47294 * 300.00616 * 9 8 7 39 39 H 0.96997 * 120.00821 * 359.71532 * 12 10 9 40 40 H 1.09000 * 109.46716 * 299.99217 * 13 12 10 41 41 H 1.09001 * 109.47255 * 59.99462 * 13 12 10 42 42 H 1.07999 * 119.96390 * 359.97438 * 15 14 13 43 43 H 1.07995 * 120.03491 * 180.26834 * 16 15 14 44 44 H 0.97002 * 120.00097 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03700 * 179.97438 * 27 17 16 46 46 H 1.08007 * 119.96679 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 4.9023 -1.3694 0.0112 7 6 2.3540 -1.1321 -0.0007 8 6 1.9591 -2.5864 -0.0002 9 6 1.8242 -3.0787 -1.4425 10 6 1.4287 -4.5329 -1.4420 11 8 1.2709 -5.1180 -0.3915 12 7 1.2516 -5.1834 -2.6090 13 6 0.8666 -6.5970 -2.6085 14 6 0.7338 -7.0819 -4.0292 15 6 -0.4849 -6.9942 -4.6772 16 6 -0.6084 -7.4325 -5.9810 17 6 0.4899 -7.9727 -6.6373 18 8 0.3701 -8.4103 -7.9168 19 6 1.4984 -8.8169 -8.5329 20 1 2.4272 -8.8625 -7.9836 21 6 1.4663 -9.1765 -9.8715 22 7 2.5673 -9.5727 -10.4728 23 14 -0.1400 -9.0970 -10.8218 24 1 -0.2859 -7.7528 -11.4357 25 1 -0.1360 -10.1304 -11.8883 26 1 -1.2751 -9.3446 -9.8968 27 6 1.7109 -8.0645 -5.9820 28 6 1.8294 -7.6192 -4.6802 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 5.2201 -1.5550 -1.0147 33 1 5.6636 -0.7851 0.5276 34 1 4.7628 -2.3202 0.5259 35 1 1.0054 -2.7038 0.5145 36 1 2.7233 -3.1701 0.5131 37 1 2.7779 -2.9613 -1.9572 38 1 1.0602 -2.4949 -1.9557 39 1 1.3745 -4.7146 -3.4492 40 1 1.6299 -7.1812 -2.0947 41 1 -0.0875 -6.7136 -2.0945 42 1 -1.3398 -6.5788 -4.1644 43 1 -1.5592 -7.3598 -6.4879 44 1 2.5449 -9.8239 -11.4095 45 1 2.5667 -8.4845 -6.4896 46 1 2.7785 -7.6907 -4.1698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:58 Heat of formation + Delta-G solvation = 3.017264 kcal Electronic energy + Delta-G solvation = -28005.508328 eV Core-core repulsion = 23863.696682 eV Total energy + Delta-G solvation = -4141.811647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.22614 -39.93399 -39.24178 -37.14386 -36.18915 -34.53117 -34.11159 -32.53100 -32.17068 -30.45405 -30.15440 -29.01510 -28.13749 -26.45396 -25.32898 -24.11442 -22.23619 -21.70883 -20.67157 -20.51892 -20.26939 -18.05800 -17.99665 -17.57293 -17.36829 -16.90323 -16.01613 -15.96130 -15.10692 -14.85335 -14.59890 -14.42094 -14.12459 -13.97048 -13.83624 -13.81351 -13.55636 -13.46302 -13.36415 -13.14514 -12.96574 -12.82758 -12.72003 -12.62827 -12.34237 -12.30778 -12.02851 -11.63209 -11.52599 -11.10546 -11.01921 -10.88620 -10.81643 -10.26132 -10.19952 -9.98224 -9.52712 -9.42837 -9.07832 -8.98590 -8.43138 -7.52637 -6.53512 -4.20624 1.13300 1.83706 1.92452 1.97680 2.54628 2.78321 3.13616 3.17845 3.28750 3.32394 3.86028 4.10373 4.13455 4.33223 4.43117 4.54225 4.65739 4.70429 4.84270 4.87913 4.97776 4.98332 5.00755 5.08602 5.13190 5.19299 5.24422 5.29399 5.33290 5.41663 5.50652 5.55674 5.66213 5.66904 5.72115 5.81078 5.91703 5.98290 6.19675 6.38388 6.42404 6.62822 6.85069 7.07363 7.13867 7.44672 7.48579 7.66591 7.90360 7.97852 8.14267 8.80911 9.41225 10.53524 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.001704 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.979441 B =16431.628031 C =16693.829764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.029 4.029 6 C -0.076 4.076 7 C -0.200 4.200 8 C -0.023 4.023 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.548 6.548 12 N -0.722 5.722 13 C 0.177 3.823 14 C -0.207 4.207 15 C -0.056 4.056 16 C -0.195 4.195 17 C 0.166 3.834 18 O -0.212 6.212 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.874 5.874 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.224 4.224 28 C -0.052 4.052 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.281 0.719 45 H 0.135 0.865 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 15.475 19.317 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.204 4.204 8 C -0.062 4.062 9 C -0.177 4.177 10 C 0.296 3.704 11 O -0.426 6.426 12 N -0.374 5.374 13 C 0.055 3.945 14 C -0.209 4.209 15 C -0.075 4.075 16 C -0.214 4.214 17 C 0.113 3.887 18 O -0.116 6.116 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.511 5.511 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.071 4.071 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.314 16.241 19.688 25.524 hybrid contribution -0.428 -0.602 -1.089 1.316 sum -0.742 15.639 18.599 24.311 Atomic orbital electron populations 1.20191 0.85951 1.03874 1.03491 1.23488 0.98959 0.88488 1.02605 1.73850 0.89316 1.23994 1.20308 1.84802 1.21626 1.22576 1.67905 1.24309 0.98319 0.83789 1.02799 1.20384 0.89979 0.98689 1.04314 1.20983 0.91580 0.97543 1.10263 1.19585 1.03630 0.87288 0.95652 1.21654 1.04013 0.93138 0.98926 1.20607 0.77035 0.88905 0.83855 1.90699 1.51483 1.69119 1.31300 1.46364 1.70036 1.12443 1.08527 1.20001 1.00323 0.80281 0.93895 1.19277 0.94893 1.10731 0.95958 1.20534 0.96212 0.97429 0.93354 1.20216 0.98017 1.07615 0.95591 1.19188 0.93307 0.91149 0.85034 1.83578 1.35648 1.70702 1.21716 1.20784 0.86773 1.44573 0.94599 0.87485 1.24494 0.98519 0.95398 0.95553 1.69641 1.26963 1.41999 1.12533 0.86171 0.82983 0.78322 0.79387 1.19795 1.20658 1.18323 1.21283 0.98823 1.08369 0.95844 1.20697 0.97053 0.95561 0.93808 0.90104 0.90488 0.89888 0.89201 0.89794 0.88849 0.89653 0.89677 0.88744 0.88812 0.76302 0.91425 0.91482 0.86791 0.86360 0.90874 0.84778 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.39 36.01 0.37 -0.16 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 N -0.37 -4.15 12.07 33.42 0.40 -3.75 16 4 O 0.10 0.97 11.20 17.19 0.19 1.17 16 5 C -0.03 -0.23 7.49 -35.30 -0.26 -0.49 16 6 C -0.08 -0.34 10.30 36.01 0.37 0.03 16 7 C -0.20 -1.68 5.58 -104.42 -0.58 -2.27 16 8 C -0.02 -0.18 4.83 -27.89 -0.13 -0.32 16 9 C -0.14 -1.02 5.68 -27.89 -0.16 -1.18 16 10 C 0.51 5.43 7.83 -10.99 -0.09 5.35 16 11 O -0.55 -7.78 15.98 5.56 0.09 -7.69 16 12 N -0.72 -7.61 5.55 -61.47 -0.34 -7.95 16 13 C 0.18 2.19 5.80 -5.19 -0.03 2.16 16 14 C -0.21 -2.99 5.25 -104.57 -0.55 -3.54 16 15 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 16 C -0.20 -3.52 9.99 -39.40 -0.39 -3.91 16 17 C 0.17 3.56 6.65 -39.11 -0.26 3.30 16 18 O -0.21 -5.31 8.59 0.02 0.00 -5.31 16 19 C -0.39 -10.54 9.95 30.88 0.31 -10.23 16 20 H 0.11 2.93 5.44 -52.48 -0.29 2.64 16 21 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 22 N -0.87 -24.35 13.96 55.48 0.77 -23.58 16 23 Si 0.91 20.82 28.62 -169.99 -4.86 15.96 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 27 C -0.22 -4.43 9.17 -39.40 -0.36 -4.79 16 28 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.28 8.14 -51.94 -0.42 -0.14 16 34 H 0.09 0.35 7.44 -51.93 -0.39 -0.04 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.08 0.67 7.40 -51.93 -0.38 0.28 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.40 3.70 8.46 -40.82 -0.35 3.36 16 40 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.28 7.22 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 46 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -31.48 396.50 -7.32 -38.81 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.32 Total: 3.61 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -3.23 Total: -17.24 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.84 Total: -35.28 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.28 Total: -11.83 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.86 Total: 15.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.48 -7.32 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.823 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds