Wall clock time and date at job start Wed Apr 1 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30173 * 126.79830 * 2 1 4 4 O 1.20922 * 111.59968 * 180.02562 * 3 2 1 5 5 C 1.34036 * 111.56957 * 359.76259 * 4 3 2 6 6 C 1.50706 * 126.77594 * 180.28591 * 5 4 3 7 7 C 1.35454 * 106.44785 * 0.38257 * 5 4 3 8 8 C 1.50699 * 128.00887 * 179.91231 * 7 5 4 9 9 C 1.52996 * 109.47154 * 269.67448 * 8 7 5 10 10 C 1.50699 * 109.47154 * 180.02562 * 9 8 7 11 11 O 1.21273 * 119.99990 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99654 * 180.02562 * 10 9 8 13 13 C 1.46511 * 119.99667 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46873 * 179.97438 * 13 12 10 15 15 C 1.38303 * 119.92751 * 269.72340 * 14 13 12 16 16 C 1.38101 * 120.06660 * 179.72826 * 15 14 13 17 17 C 1.38876 * 119.92606 * 0.57177 * 16 15 14 18 18 O 1.35757 * 120.06683 * 179.68363 * 17 16 15 19 19 C 1.34832 * 117.00048 * 174.48364 * 18 17 16 20 20 H 1.08004 * 120.00074 * 5.05687 * 19 18 17 21 21 C 1.38650 * 119.99780 * 185.05547 * 19 18 17 22 22 N 1.31558 * 119.99911 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00294 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47104 * 90.00027 * 23 21 19 25 25 H 1.48502 * 109.47370 * 209.99890 * 23 21 19 26 26 H 1.48501 * 109.47001 * 330.00045 * 23 21 19 27 27 C 1.38881 * 119.86675 * 359.69738 * 17 16 15 28 28 C 1.38094 * 119.92855 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47230 * 269.97659 * 1 2 3 30 30 H 1.09003 * 109.46853 * 29.97737 * 1 2 3 31 31 H 1.09004 * 109.46850 * 149.97420 * 1 2 3 32 32 H 1.09000 * 109.46976 * 270.10437 * 6 5 4 33 33 H 1.08988 * 109.47196 * 30.11640 * 6 5 4 34 34 H 1.09004 * 109.46871 * 150.11211 * 6 5 4 35 35 H 1.09001 * 109.46996 * 149.67650 * 8 7 5 36 36 H 1.09003 * 109.46658 * 29.67811 * 8 7 5 37 37 H 1.09006 * 109.47018 * 59.99728 * 9 8 7 38 38 H 1.08997 * 109.47294 * 300.00616 * 9 8 7 39 39 H 0.96997 * 120.00821 * 359.71532 * 12 10 9 40 40 H 1.09000 * 109.46716 * 299.99217 * 13 12 10 41 41 H 1.09001 * 109.47255 * 59.99462 * 13 12 10 42 42 H 1.07999 * 119.96390 * 359.97438 * 15 14 13 43 43 H 1.07995 * 120.03491 * 180.26834 * 16 15 14 44 44 H 0.97002 * 120.00097 * 180.02562 * 22 21 19 45 45 H 1.08000 * 120.03700 * 179.97438 * 27 17 16 46 46 H 1.08007 * 119.96679 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 4.9023 -1.3694 0.0112 7 6 2.3540 -1.1321 -0.0007 8 6 1.9591 -2.5864 -0.0002 9 6 1.8242 -3.0787 -1.4425 10 6 1.4287 -4.5329 -1.4420 11 8 1.2709 -5.1180 -0.3915 12 7 1.2516 -5.1834 -2.6090 13 6 0.8666 -6.5970 -2.6085 14 6 0.7338 -7.0819 -4.0292 15 6 -0.4849 -6.9942 -4.6772 16 6 -0.6084 -7.4325 -5.9810 17 6 0.4899 -7.9727 -6.6373 18 8 0.3701 -8.4103 -7.9168 19 6 1.4984 -8.8169 -8.5329 20 1 2.4272 -8.8625 -7.9836 21 6 1.4663 -9.1765 -9.8715 22 7 2.5673 -9.5727 -10.4728 23 14 -0.1400 -9.0970 -10.8218 24 1 -0.2859 -7.7528 -11.4357 25 1 -0.1360 -10.1304 -11.8883 26 1 -1.2751 -9.3446 -9.8968 27 6 1.7109 -8.0645 -5.9820 28 6 1.8294 -7.6192 -4.6802 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 5.2201 -1.5550 -1.0147 33 1 5.6636 -0.7851 0.5276 34 1 4.7628 -2.3202 0.5259 35 1 1.0054 -2.7038 0.5145 36 1 2.7233 -3.1701 0.5131 37 1 2.7779 -2.9613 -1.9572 38 1 1.0602 -2.4949 -1.9557 39 1 1.3745 -4.7146 -3.4492 40 1 1.6299 -7.1812 -2.0947 41 1 -0.0875 -6.7136 -2.0945 42 1 -1.3398 -6.5788 -4.1644 43 1 -1.5592 -7.3598 -6.4879 44 1 2.5449 -9.8239 -11.4095 45 1 2.5667 -8.4845 -6.4896 46 1 2.7785 -7.6907 -4.1698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067930613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:57 Heat of formation + Delta-G solvation = -15.782272 kcal Electronic energy + Delta-G solvation = -28006.323537 eV Core-core repulsion = 23863.696682 eV Total energy + Delta-G solvation = -4142.626856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.90376 -41.08069 -40.56023 -38.62017 -36.86602 -35.60913 -34.71994 -34.43947 -32.85162 -31.86905 -31.40348 -29.60840 -28.72192 -27.80548 -26.62937 -25.17502 -23.71048 -22.44679 -22.01973 -21.28166 -20.95479 -19.84041 -19.14549 -18.71518 -18.22700 -17.69833 -16.97576 -16.86500 -16.54887 -16.11017 -15.75113 -15.65573 -15.38370 -15.23433 -14.93253 -14.57195 -14.40216 -14.29792 -14.28173 -14.07089 -13.97147 -13.83670 -13.69455 -13.48245 -13.26058 -13.17114 -13.08035 -12.90500 -12.57273 -12.46712 -12.31357 -12.22815 -11.93787 -11.71363 -11.29944 -11.02278 -10.88637 -10.75994 -10.05211 -10.01549 -9.82741 -9.08341 -8.50788 -6.23676 0.48417 0.52518 0.55187 1.20682 1.32557 1.35565 1.52097 1.72233 2.20229 2.27359 2.37116 2.80696 3.06141 3.15138 3.26345 3.54571 3.76303 3.86521 3.92976 4.02264 4.07347 4.14828 4.33142 4.34597 4.43518 4.46380 4.55160 4.61626 4.65366 4.71119 4.73918 4.77905 4.84809 4.85327 4.92665 4.97068 5.07476 5.12022 5.18356 5.22967 5.34213 5.36991 5.49596 5.55001 5.71542 5.79280 5.88778 6.19835 6.63975 6.83462 7.31408 7.32588 7.56719 8.60357 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.001704 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.979441 B =16431.628031 C =16693.829764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 N -0.403 5.403 4 O 0.078 5.922 5 C -0.025 4.025 6 C -0.077 4.077 7 C -0.208 4.208 8 C -0.016 4.016 9 C -0.129 4.129 10 C 0.514 3.486 11 O -0.583 6.583 12 N -0.718 5.718 13 C 0.182 3.818 14 C -0.173 4.173 15 C -0.046 4.046 16 C -0.193 4.193 17 C 0.127 3.873 18 O -0.243 6.243 19 C -0.399 4.399 20 H 0.083 0.917 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.270 1.270 26 H -0.262 1.262 27 C -0.239 4.239 28 C -0.050 4.050 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.154 0.846 43 H 0.130 0.870 44 H 0.285 0.715 45 H 0.109 0.891 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 16.700 21.298 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.142 4.142 3 N -0.113 5.113 4 O 0.017 5.983 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.212 4.212 8 C -0.054 4.054 9 C -0.168 4.168 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.369 5.369 13 C 0.059 3.941 14 C -0.174 4.174 15 C -0.064 4.064 16 C -0.212 4.212 17 C 0.078 3.922 18 O -0.150 6.150 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.189 4.189 22 N -0.562 5.562 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.186 1.186 27 C -0.258 4.258 28 C -0.069 4.069 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.172 0.828 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.624 17.496 21.704 27.925 hybrid contribution 0.002 -0.852 -1.276 1.534 sum -1.621 16.644 20.428 26.400 Atomic orbital electron populations 1.20307 0.84469 1.04587 1.04242 1.23986 1.00123 0.88540 1.01581 1.73847 0.89910 1.25227 1.22285 1.84762 1.21408 1.23746 1.68387 1.24949 0.99635 0.83132 1.01094 1.20584 0.88618 0.98737 1.05501 1.21059 0.91582 0.97561 1.11021 1.19503 1.03311 0.86733 0.95866 1.21635 1.05365 0.90773 0.99044 1.21044 0.75921 0.89828 0.82989 1.90698 1.53010 1.70104 1.32507 1.46207 1.69919 1.11622 1.09193 1.19898 1.01040 0.81408 0.91768 1.19573 0.93914 1.07307 0.96594 1.20958 0.97634 0.95789 0.92030 1.20525 0.97404 1.06614 0.96648 1.19759 0.95167 0.92893 0.84404 1.83526 1.34475 1.73490 1.23531 1.20703 0.86940 1.44861 0.94987 0.89908 1.25285 1.01737 0.95435 0.96434 1.69727 1.28829 1.44498 1.13099 0.85223 0.78765 0.78774 0.78015 1.19025 1.19443 1.18646 1.21277 0.97779 1.09294 0.97442 1.20930 0.98903 0.94741 0.92310 0.89301 0.90413 0.88491 0.87790 0.88658 0.87819 0.90249 0.89698 0.86938 0.87276 0.75225 0.91344 0.90620 0.82831 0.85227 0.90568 0.87326 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.39 71.24 0.74 -0.20 16 2 C 0.02 0.29 7.33 43.58 0.32 0.61 16 3 N -0.40 -8.88 12.07 -49.57 -0.60 -9.48 16 4 O 0.08 1.55 11.20 71.67 0.80 2.35 16 5 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16 6 C -0.08 -0.50 10.30 71.24 0.73 0.23 16 7 C -0.21 -3.10 5.58 -19.73 -0.11 -3.21 16 8 C -0.02 -0.21 4.83 29.85 0.14 -0.06 16 9 C -0.13 -1.44 5.68 29.85 0.17 -1.27 16 10 C 0.51 9.06 7.83 87.66 0.69 9.75 16 11 O -0.58 -14.77 15.98 -3.01 -0.05 -14.82 16 12 N -0.72 -12.08 5.55 -466.77 -2.59 -14.67 16 13 C 0.18 3.71 5.80 85.63 0.50 4.20 16 14 C -0.17 -4.34 5.25 -19.83 -0.10 -4.44 16 15 C -0.05 -1.19 9.69 22.25 0.22 -0.97 16 16 C -0.19 -6.57 9.99 22.39 0.22 -6.34 16 17 C 0.13 5.51 6.65 22.58 0.15 5.66 16 18 O -0.24 -12.56 8.59 -22.84 -0.20 -12.76 16 19 C -0.40 -22.59 9.95 67.92 0.68 -21.92 16 20 H 0.08 4.91 5.44 -2.91 -0.02 4.89 16 21 C 0.01 0.55 5.49 84.83 0.47 1.02 16 22 N -0.92 -53.62 13.96 21.61 0.30 -53.31 16 23 Si 0.97 43.98 28.62 68.60 1.96 45.95 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 27 C -0.24 -9.58 9.17 22.39 0.21 -9.37 16 28 C -0.05 -1.52 9.69 22.25 0.22 -1.30 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.10 0.49 7.44 -2.39 -0.02 0.47 16 35 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.08 1.11 7.40 -2.39 -0.02 1.09 16 37 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.41 5.72 8.46 -92.71 -0.78 4.94 16 40 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 41 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 44 H 0.28 15.22 8.31 -92.71 -0.77 14.44 16 45 H 0.11 4.90 5.64 -2.91 -0.02 4.88 16 46 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -72.25 396.50 5.28 -66.97 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.23 Total: 17.56 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 5.42 Total: -27.78 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -2.89 Total: -77.46 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: 0.56 Total: -25.23 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.96 Total: 45.95 kcal Total: -72.25 5.28 -66.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.186 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds