Wall clock time and date at job start Wed Apr 1 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47014 * 2 1 4 4 C 1.52995 * 109.47292 * 120.00130 * 2 1 3 5 5 H 1.08998 * 109.47212 * 295.35824 * 4 2 1 6 6 C 1.50703 * 109.47471 * 175.35500 * 4 2 1 7 7 O 1.21279 * 119.99965 * 276.83998 * 6 4 2 8 8 N 1.34775 * 119.99930 * 96.83403 * 6 4 2 9 9 C 1.46500 * 120.00024 * 5.26550 * 8 6 4 10 10 C 1.46497 * 120.00248 * 185.26693 * 8 6 4 11 11 C 1.50698 * 109.47450 * 89.99662 * 10 8 6 12 12 H 1.08003 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99877 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00111 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46828 * 90.00309 * 15 13 11 17 17 H 1.48499 * 109.47337 * 210.00269 * 15 13 11 18 18 H 1.48508 * 109.47213 * 330.00601 * 15 13 11 19 19 N 1.46502 * 109.47154 * 55.35453 * 4 2 1 20 20 C 1.34523 * 124.46000 * 59.97774 * 19 4 2 21 21 O 1.21452 * 125.70840 * 0.02562 * 20 19 4 22 22 C 1.47813 * 108.58233 * 180.02562 * 20 19 4 23 23 C 1.38569 * 134.29901 * 179.97438 * 22 20 19 24 24 C 1.38615 * 119.71837 * 180.02562 * 23 22 20 25 25 C 1.38229 * 120.45923 * 0.02562 * 24 23 22 26 26 C 1.38607 * 120.46079 * 359.97438 * 25 24 23 27 27 C 1.38574 * 119.72123 * 0.02562 * 26 25 24 28 28 C 1.34527 * 124.46179 * 239.99687 * 19 4 2 29 29 O 1.21447 * 125.70943 * 359.96241 * 28 19 4 30 30 H 1.09002 * 109.47055 * 299.99284 * 1 2 3 31 31 H 1.08992 * 109.47152 * 60.00002 * 1 2 3 32 32 H 1.09006 * 109.46809 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47257 * 239.99968 * 2 1 3 34 34 H 1.08999 * 109.47176 * 175.36770 * 3 2 1 35 35 H 1.08995 * 109.46917 * 295.37232 * 3 2 1 36 36 H 1.09004 * 109.46743 * 55.37090 * 3 2 1 37 37 H 1.09000 * 109.47413 * 84.13309 * 9 8 6 38 38 H 1.09001 * 109.47141 * 204.13532 * 9 8 6 39 39 H 1.09002 * 109.47377 * 324.12959 * 9 8 6 40 40 H 1.08998 * 109.47149 * 210.00137 * 10 8 6 41 41 H 1.09008 * 109.47044 * 329.99759 * 10 8 6 42 42 H 0.97000 * 119.99701 * 179.97438 * 14 13 11 43 43 H 1.07997 * 120.14025 * 0.04757 * 23 22 20 44 44 H 1.07997 * 119.76704 * 180.27148 * 24 23 22 45 45 H 1.08000 * 119.77050 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.14083 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7463 -0.1617 2.1372 6 6 3.5427 -0.8217 1.1930 7 8 4.0676 -1.7167 0.5651 8 7 4.3032 0.0832 1.8405 9 6 3.6727 1.0947 2.6922 10 6 5.7604 0.0554 1.6926 11 6 6.1640 0.9232 0.5286 12 1 5.4103 1.4438 -0.0436 13 6 7.4952 1.0526 0.1940 14 7 7.8474 1.8103 -0.8215 15 14 8.7988 0.1527 1.1841 16 1 9.0357 -1.1869 0.5884 17 1 10.0619 0.9334 1.1647 18 1 8.3352 -0.0040 2.5862 19 7 1.4626 -2.0664 1.3064 20 6 1.6338 -3.0091 0.3621 21 8 2.2821 -2.8820 -0.6570 22 6 0.9010 -4.2254 0.7725 23 6 0.7194 -5.4805 0.2139 24 6 -0.0510 -6.4228 0.8772 25 6 -0.6391 -6.1188 2.0906 26 6 -0.4661 -4.8676 2.6614 27 6 0.3014 -3.9154 2.0098 28 6 0.6909 -2.5215 2.3100 29 8 0.3680 -1.8922 3.2973 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1269 1.4437 0.0830 35 1 1.7460 1.9318 -0.9285 36 1 1.6105 1.9797 0.8457 37 1 3.4909 0.6747 3.6815 38 1 4.3319 1.9583 2.7797 39 1 2.7259 1.4039 2.2492 40 1 6.2254 0.4308 2.6041 41 1 6.0879 -0.9687 1.5130 42 1 8.7840 1.9016 -1.0566 43 1 1.1764 -5.7235 -0.7339 44 1 -0.1895 -7.4027 0.4447 45 1 -1.2375 -6.8613 2.5976 46 1 -0.9276 -4.6357 3.6099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069649052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:31 Heat of formation + Delta-G solvation = -37.271503 kcal Electronic energy + Delta-G solvation = -31496.240421 eV Core-core repulsion = 27352.681722 eV Total energy + Delta-G solvation = -4143.558699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51616 -39.65823 -38.58648 -38.28906 -36.13497 -35.24239 -34.89052 -32.51843 -31.65991 -31.41400 -29.08993 -27.45904 -27.05926 -25.83986 -25.16377 -23.67959 -22.49980 -22.28176 -20.62354 -20.00916 -18.59670 -17.91478 -17.18244 -17.02016 -16.94362 -16.51893 -16.06128 -15.31351 -15.28370 -15.04982 -14.73016 -14.52677 -14.26563 -14.20683 -13.85492 -13.60480 -13.42398 -12.99030 -12.92936 -12.63022 -12.53241 -12.44121 -12.33141 -12.21010 -11.98084 -11.88947 -11.53958 -11.28977 -11.02417 -10.95740 -10.76087 -10.55506 -10.49449 -10.25120 -10.15152 -9.90041 -9.54376 -9.51797 -9.48976 -8.82828 -8.59277 -7.74354 -6.09406 -4.08435 -0.08073 0.68797 1.90797 2.16833 2.95113 3.17623 3.29350 3.35203 3.36299 3.37669 3.49284 3.79456 4.21910 4.34208 4.39350 4.54621 4.71870 4.75799 4.78124 4.87747 4.92905 5.08376 5.13896 5.22477 5.26616 5.44004 5.50576 5.54804 5.59933 5.67469 5.71600 5.79109 5.81225 5.86651 5.87364 5.95989 6.08040 6.17261 6.27564 6.34159 6.53450 6.63578 6.73426 6.92008 7.23536 7.26700 7.58864 7.74005 8.12753 8.44669 8.82831 8.94246 9.50654 11.03677 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.003583 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.241796 B = 7811.746379 C = 8433.931112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.155 4.155 4 C 0.127 3.873 5 H 0.122 0.878 6 C 0.500 3.500 7 O -0.512 6.512 8 N -0.591 5.591 9 C 0.070 3.930 10 C 0.216 3.784 11 C -0.530 4.530 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.561 5.561 20 C 0.564 3.436 21 O -0.413 6.413 22 C -0.127 4.127 23 C -0.050 4.050 24 C -0.096 4.096 25 C -0.103 4.103 26 C -0.047 4.047 27 C -0.140 4.140 28 C 0.576 3.424 29 O -0.471 6.471 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.037 0.963 42 H 0.265 0.735 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.943 -12.051 6.848 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.212 4.212 4 C 0.022 3.978 5 H 0.139 0.861 6 C 0.284 3.716 7 O -0.386 6.386 8 N -0.324 5.324 9 C -0.073 4.073 10 C 0.096 3.904 11 C -0.568 4.568 12 H 0.095 0.905 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.191 1.191 19 N -0.303 5.303 20 C 0.350 3.650 21 O -0.279 6.279 22 C -0.131 4.131 23 C -0.069 4.069 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.065 4.065 27 C -0.144 4.144 28 C 0.365 3.635 29 O -0.343 6.343 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.221 -11.960 6.358 24.339 hybrid contribution 0.877 -0.252 0.491 1.036 sum -19.344 -12.212 6.848 23.879 Atomic orbital electron populations 1.21811 0.94299 1.01402 1.02401 1.21388 0.96199 0.97431 0.97020 1.22011 1.03553 0.93508 1.02159 1.21565 0.92800 0.80688 1.02753 0.86070 1.20150 0.87753 0.83173 0.80539 1.90762 1.73708 1.33545 1.40590 1.47801 1.08744 1.30159 1.45695 1.21928 0.98904 0.92916 0.93572 1.19717 0.74754 0.98452 0.97526 1.21311 0.93600 1.28407 1.13478 0.90515 1.24834 0.98338 0.94829 0.94868 1.69890 1.17359 1.38763 1.27376 0.86871 0.81492 0.80378 0.81072 1.19920 1.21033 1.19096 1.46316 1.47411 1.14605 1.21990 1.18248 0.80150 0.83268 0.83298 1.90877 1.33540 1.80553 1.22904 1.20735 1.00146 0.95656 0.96561 1.20834 0.95841 0.90228 0.99958 1.21452 0.95629 0.99478 0.94846 1.21415 0.99031 0.96138 0.95550 1.20776 0.94958 0.91440 0.99357 1.20585 1.01819 0.94935 0.97066 1.18342 0.77050 0.86438 0.81684 1.90780 1.53410 1.63582 1.26572 0.92272 0.91644 0.93475 0.88692 0.90109 0.91608 0.92290 0.93415 0.89854 0.91691 0.95021 0.94507 0.92542 0.83981 0.84187 0.84228 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.99 37.16 0.33 -1.41 16 2 C -0.10 -1.56 2.28 -90.62 -0.21 -1.77 16 3 C -0.15 -2.30 7.80 37.16 0.29 -2.01 16 4 C 0.13 2.14 1.79 -69.08 -0.12 2.01 16 5 H 0.12 1.83 5.59 -51.93 -0.29 1.54 16 6 C 0.50 10.71 5.91 -10.98 -0.06 10.64 16 7 O -0.51 -13.09 13.54 -16.96 -0.23 -13.32 16 8 N -0.59 -12.45 2.36 -182.95 -0.43 -12.88 16 9 C 0.07 1.12 9.23 59.85 0.55 1.67 16 10 C 0.22 5.35 4.24 -5.20 -0.02 5.33 16 11 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 12 H 0.08 2.36 7.63 -52.48 -0.40 1.96 16 13 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 14 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 15 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 16 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 19 N -0.56 -9.11 1.58 -111.75 -0.18 -9.28 16 20 C 0.56 9.49 6.80 -12.46 -0.08 9.40 16 21 O -0.41 -8.37 14.55 -17.11 -0.25 -8.61 16 22 C -0.13 -1.64 6.40 -104.83 -0.67 -2.31 16 23 C -0.05 -0.48 10.09 -39.32 -0.40 -0.87 16 24 C -0.10 -0.62 10.04 -39.45 -0.40 -1.02 16 25 C -0.10 -0.63 10.03 -39.45 -0.40 -1.03 16 26 C -0.05 -0.39 10.09 -39.32 -0.40 -0.79 16 27 C -0.14 -1.68 6.41 -104.83 -0.67 -2.36 16 28 C 0.58 8.43 8.02 -12.46 -0.10 8.33 16 29 O -0.47 -7.43 17.43 5.41 0.09 -7.33 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.59 7.35 -51.93 -0.38 0.21 16 33 H 0.09 1.74 6.99 -51.93 -0.36 1.38 16 34 H 0.08 1.51 5.87 -51.93 -0.30 1.20 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.72 7.01 -51.93 -0.36 0.36 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.31 8.03 -51.93 -0.42 0.90 16 39 H 0.06 0.88 3.88 -51.93 -0.20 0.68 16 40 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 41 H 0.04 0.99 6.78 -51.92 -0.35 0.64 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 46 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -36.87 374.56 -8.03 -44.90 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.99 Total: 0.16 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -2.79 Total: 10.41 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.17 Total: -48.98 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.38 Total: -29.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.87 -8.03 -44.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069649052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.629 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds