Wall clock time and date at job start Wed Apr 1 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47014 * 2 1 4 4 C 1.52995 * 109.47292 * 120.00130 * 2 1 3 5 5 H 1.08998 * 109.47212 * 295.35824 * 4 2 1 6 6 C 1.50703 * 109.47471 * 175.35500 * 4 2 1 7 7 O 1.21279 * 119.99965 * 276.83998 * 6 4 2 8 8 N 1.34775 * 119.99930 * 96.83403 * 6 4 2 9 9 C 1.46500 * 120.00024 * 5.26550 * 8 6 4 10 10 C 1.46497 * 120.00248 * 185.26693 * 8 6 4 11 11 C 1.50698 * 109.47450 * 89.99662 * 10 8 6 12 12 H 1.08003 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00081 * 180.02562 * 11 10 8 14 14 N 1.31512 * 119.99877 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00111 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46828 * 90.00309 * 15 13 11 17 17 H 1.48499 * 109.47337 * 210.00269 * 15 13 11 18 18 H 1.48508 * 109.47213 * 330.00601 * 15 13 11 19 19 N 1.46502 * 109.47154 * 55.35453 * 4 2 1 20 20 C 1.34523 * 124.46000 * 59.97774 * 19 4 2 21 21 O 1.21452 * 125.70840 * 0.02562 * 20 19 4 22 22 C 1.47813 * 108.58233 * 180.02562 * 20 19 4 23 23 C 1.38569 * 134.29901 * 179.97438 * 22 20 19 24 24 C 1.38615 * 119.71837 * 180.02562 * 23 22 20 25 25 C 1.38229 * 120.45923 * 0.02562 * 24 23 22 26 26 C 1.38607 * 120.46079 * 359.97438 * 25 24 23 27 27 C 1.38574 * 119.72123 * 0.02562 * 26 25 24 28 28 C 1.34527 * 124.46179 * 239.99687 * 19 4 2 29 29 O 1.21447 * 125.70943 * 359.96241 * 28 19 4 30 30 H 1.09002 * 109.47055 * 299.99284 * 1 2 3 31 31 H 1.08992 * 109.47152 * 60.00002 * 1 2 3 32 32 H 1.09006 * 109.46809 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47257 * 239.99968 * 2 1 3 34 34 H 1.08999 * 109.47176 * 175.36770 * 3 2 1 35 35 H 1.08995 * 109.46917 * 295.37232 * 3 2 1 36 36 H 1.09004 * 109.46743 * 55.37090 * 3 2 1 37 37 H 1.09000 * 109.47413 * 84.13309 * 9 8 6 38 38 H 1.09001 * 109.47141 * 204.13532 * 9 8 6 39 39 H 1.09002 * 109.47377 * 324.12959 * 9 8 6 40 40 H 1.08998 * 109.47149 * 210.00137 * 10 8 6 41 41 H 1.09008 * 109.47044 * 329.99759 * 10 8 6 42 42 H 0.97000 * 119.99701 * 179.97438 * 14 13 11 43 43 H 1.07997 * 120.14025 * 0.04757 * 23 22 20 44 44 H 1.07997 * 119.76704 * 180.27148 * 24 23 22 45 45 H 1.08000 * 119.77050 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.14083 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7463 -0.1617 2.1372 6 6 3.5427 -0.8217 1.1930 7 8 4.0676 -1.7167 0.5651 8 7 4.3032 0.0832 1.8405 9 6 3.6727 1.0947 2.6922 10 6 5.7604 0.0554 1.6926 11 6 6.1640 0.9232 0.5286 12 1 5.4103 1.4438 -0.0436 13 6 7.4952 1.0526 0.1940 14 7 7.8474 1.8103 -0.8215 15 14 8.7988 0.1527 1.1841 16 1 9.0357 -1.1869 0.5884 17 1 10.0619 0.9334 1.1647 18 1 8.3352 -0.0040 2.5862 19 7 1.4626 -2.0664 1.3064 20 6 1.6338 -3.0091 0.3621 21 8 2.2821 -2.8820 -0.6570 22 6 0.9010 -4.2254 0.7725 23 6 0.7194 -5.4805 0.2139 24 6 -0.0510 -6.4228 0.8772 25 6 -0.6391 -6.1188 2.0906 26 6 -0.4661 -4.8676 2.6614 27 6 0.3014 -3.9154 2.0098 28 6 0.6909 -2.5215 2.3100 29 8 0.3680 -1.8922 3.2973 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1269 1.4437 0.0830 35 1 1.7460 1.9318 -0.9285 36 1 1.6105 1.9797 0.8457 37 1 3.4909 0.6747 3.6815 38 1 4.3319 1.9583 2.7797 39 1 2.7259 1.4039 2.2492 40 1 6.2254 0.4308 2.6041 41 1 6.0879 -0.9687 1.5130 42 1 8.7840 1.9016 -1.0566 43 1 1.1764 -5.7235 -0.7339 44 1 -0.1895 -7.4027 0.4447 45 1 -1.2375 -6.8613 2.5976 46 1 -0.9276 -4.6357 3.6099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069649052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:31 Heat of formation + Delta-G solvation = -60.732529 kcal Electronic energy + Delta-G solvation = -31497.257767 eV Core-core repulsion = 27352.681722 eV Total energy + Delta-G solvation = -4144.576045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.63828 -41.08095 -39.74626 -39.34180 -37.48092 -36.85270 -36.23154 -34.69316 -32.59906 -32.10599 -30.91789 -28.79757 -28.24975 -27.35098 -26.19155 -24.97920 -23.97500 -23.28047 -21.85187 -21.21278 -20.01995 -19.20457 -19.02723 -18.37700 -18.24514 -17.60116 -17.37241 -16.91790 -16.52551 -16.35492 -15.95617 -15.77658 -15.38228 -15.13960 -15.13569 -15.02624 -14.84741 -14.48603 -14.20869 -14.00857 -13.84300 -13.75197 -13.68503 -13.37422 -13.21980 -13.19320 -12.81754 -12.70778 -12.54040 -12.41550 -12.25469 -12.12257 -12.02402 -11.74341 -11.59713 -11.52342 -11.17681 -10.86399 -10.49071 -10.20623 -10.17252 -9.51056 -8.36846 -6.41729 -0.98432 0.00082 0.96692 1.01419 1.28163 1.32616 1.40452 1.56455 1.77212 2.22308 2.27316 2.58700 2.65067 2.96938 3.20527 3.35543 3.45780 3.58068 3.61305 3.88963 4.00789 4.07193 4.19416 4.23140 4.24675 4.33593 4.38752 4.49015 4.53117 4.63527 4.68863 4.74656 4.75344 4.85082 4.85324 4.88820 4.96015 5.00490 5.15940 5.22373 5.25211 5.27708 5.40084 5.48197 5.56288 5.72133 6.11542 6.19343 6.45023 6.56387 6.60196 7.11434 7.25363 8.79684 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.003583 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.241796 B = 7811.746379 C = 8433.931112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.149 4.149 4 C 0.135 3.865 5 H 0.144 0.856 6 C 0.491 3.509 7 O -0.565 6.565 8 N -0.597 5.597 9 C 0.064 3.936 10 C 0.225 3.775 11 C -0.534 4.534 12 H 0.037 0.963 13 C 0.014 3.986 14 N -0.941 5.941 15 Si 0.943 3.057 16 H -0.281 1.281 17 H -0.271 1.271 18 H -0.239 1.239 19 N -0.569 5.569 20 C 0.556 3.444 21 O -0.470 6.470 22 C -0.158 4.158 23 C -0.054 4.054 24 C -0.079 4.079 25 C -0.082 4.082 26 C -0.039 4.039 27 C -0.158 4.158 28 C 0.575 3.425 29 O -0.486 6.486 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.013 0.987 42 H 0.269 0.731 43 H 0.144 0.856 44 H 0.182 0.818 45 H 0.187 0.813 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.774 -14.387 9.929 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C -0.206 4.206 4 C 0.030 3.970 5 H 0.161 0.839 6 C 0.277 3.723 7 O -0.443 6.443 8 N -0.329 5.329 9 C -0.078 4.078 10 C 0.103 3.897 11 C -0.573 4.573 12 H 0.055 0.945 13 C -0.184 4.184 14 N -0.581 5.581 15 Si 0.766 3.234 16 H -0.207 1.207 17 H -0.196 1.196 18 H -0.163 1.163 19 N -0.311 5.311 20 C 0.346 3.654 21 O -0.340 6.340 22 C -0.162 4.162 23 C -0.073 4.073 24 C -0.097 4.097 25 C -0.099 4.099 26 C -0.057 4.057 27 C -0.162 4.162 28 C 0.366 3.634 29 O -0.360 6.360 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.162 0.838 44 H 0.199 0.801 45 H 0.204 0.796 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.109 -14.273 9.496 28.773 hybrid contribution 1.640 0.394 -0.512 1.762 sum -21.469 -13.880 8.983 27.097 Atomic orbital electron populations 1.21741 0.91188 1.01676 1.04196 1.21347 0.98592 0.96973 0.94793 1.21962 1.00738 0.93701 1.04229 1.21469 0.89319 0.82120 1.04103 0.83889 1.21010 0.89852 0.82207 0.79261 1.90726 1.75141 1.35775 1.42667 1.47884 1.07543 1.31221 1.46225 1.22228 0.99505 0.91872 0.94163 1.19391 0.77580 0.96090 0.96675 1.21517 0.93050 1.28371 1.14352 0.94515 1.25781 1.00914 0.95650 0.96070 1.70034 1.18163 1.40584 1.29363 0.85783 0.78591 0.78348 0.80629 1.20670 1.19618 1.16253 1.46455 1.47675 1.14286 1.22687 1.19029 0.79269 0.84692 0.82423 1.90832 1.36331 1.81723 1.25115 1.20572 1.02000 0.95652 0.97967 1.21145 0.96197 0.89596 1.00378 1.21948 0.93217 1.00029 0.94489 1.21991 0.97478 0.95650 0.94784 1.21216 0.93334 0.91342 0.99814 1.20499 1.04156 0.94036 0.97475 1.18779 0.76226 0.87572 0.80814 1.90751 1.54063 1.64312 1.26842 0.90163 0.90040 0.93979 0.92702 0.94444 0.90645 0.88871 0.90481 0.89769 0.89507 0.92758 0.96847 0.92234 0.83825 0.80114 0.79556 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.99 71.98 0.65 -2.49 16 2 C -0.10 -3.17 2.28 -10.79 -0.02 -3.19 16 3 C -0.15 -4.56 7.80 71.98 0.56 -4.00 16 4 C 0.13 4.71 1.79 44.24 0.08 4.79 16 5 H 0.14 4.23 5.59 -2.39 -0.01 4.21 16 6 C 0.49 22.24 5.91 87.66 0.52 22.76 16 7 O -0.56 -31.29 13.54 18.51 0.25 -31.04 16 8 N -0.60 -25.95 2.36 -851.13 -2.01 -27.96 16 9 C 0.06 1.98 9.23 127.77 1.18 3.16 16 10 C 0.22 11.46 4.24 85.63 0.36 11.82 16 11 C -0.53 -32.10 9.94 25.60 0.25 -31.85 16 12 H 0.04 2.43 7.63 -2.91 -0.02 2.41 16 13 C 0.01 0.86 5.47 84.65 0.46 1.32 16 14 N -0.94 -60.44 13.96 21.45 0.30 -60.14 16 15 Si 0.94 45.82 27.47 68.60 1.88 47.71 16 16 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 19 N -0.57 -19.22 1.58 -744.38 -1.17 -20.39 16 20 C 0.56 20.09 6.80 86.82 0.59 20.68 16 21 O -0.47 -21.10 14.55 17.97 0.26 -20.84 16 22 C -0.16 -4.11 6.40 -20.00 -0.13 -4.24 16 23 C -0.05 -0.97 10.09 22.44 0.23 -0.74 16 24 C -0.08 -0.67 10.04 22.36 0.22 -0.45 16 25 C -0.08 -0.54 10.03 22.36 0.22 -0.32 16 26 C -0.04 -0.50 10.09 22.44 0.23 -0.28 16 27 C -0.16 -3.60 6.41 -20.00 -0.13 -3.73 16 28 C 0.57 16.71 8.02 86.82 0.70 17.40 16 29 O -0.49 -14.76 17.43 -3.55 -0.06 -14.83 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.05 7.35 -2.38 -0.02 1.03 16 33 H 0.05 2.23 6.99 -2.39 -0.02 2.21 16 34 H 0.04 1.48 5.87 -2.39 -0.01 1.47 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.16 7.01 -2.38 -0.02 2.14 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.60 8.03 -2.39 -0.02 2.58 16 39 H 0.09 2.27 3.88 -2.39 -0.01 2.26 16 40 H 0.05 2.52 7.13 -2.39 -0.02 2.50 16 41 H 0.01 0.75 6.78 -2.38 -0.02 0.73 16 42 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 43 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.18 0.13 8.06 -2.91 -0.02 0.10 16 45 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -90.47 374.56 6.38 -84.09 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.96 Total: 12.75 kcal Atomic # 6 Polarization: 24.68 SS G_CDS: 5.97 Total: 30.66 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -2.88 Total: -108.49 kcal Atomic # 8 Polarization: -67.16 SS G_CDS: 0.45 Total: -66.71 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.88 Total: 47.71 kcal Total: -90.47 6.38 -84.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069649052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.355 kcal (2) G-P(sol) polarization free energy of solvation -90.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds