Wall clock time and date at job start Wed Apr 1 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 H 1.09007 * 109.47047 * 54.99584 * 3 2 1 5 5 C 1.50699 * 109.47687 * 174.99752 * 3 2 1 6 6 H 1.07998 * 119.99931 * 119.99815 * 5 3 2 7 7 C 1.37880 * 120.00038 * 300.00209 * 5 3 2 8 8 N 1.31510 * 120.00034 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99993 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47086 * 89.99737 * 9 7 5 11 11 H 1.48489 * 109.47068 * 210.00222 * 9 7 5 12 12 H 1.48499 * 109.47032 * 330.00039 * 9 7 5 13 13 N 1.46503 * 109.47113 * 295.00119 * 3 2 1 14 14 C 1.34775 * 119.99837 * 84.99784 * 13 3 2 15 15 O 1.21357 * 120.00536 * 359.97438 * 14 13 3 16 16 C 1.49362 * 119.99736 * 179.72618 * 14 13 3 17 17 O 1.21379 * 119.99723 * 0.02562 * 16 14 13 18 18 N 1.34774 * 119.99770 * 179.97438 * 16 14 13 19 19 C 1.39759 * 119.99676 * 174.72720 * 18 16 14 20 20 C 1.39090 * 120.11063 * 146.80679 * 19 18 16 21 21 C 1.38088 * 120.41117 * 180.11962 * 20 19 18 22 22 C 1.38382 * 120.48344 * 359.89658 * 21 20 19 23 23 C 1.39634 * 119.37843 * 359.93295 * 22 21 20 24 24 C 1.38613 * 120.10751 * 326.53061 * 19 18 16 25 25 C 1.47618 * 120.10755 * 180.33577 * 23 22 21 26 26 O 1.21252 * 121.17282 * 168.60311 * 25 23 22 27 27 C 1.51468 * 117.65678 * 348.63103 * 25 23 22 28 28 C 1.53440 * 107.37057 * 42.47782 * 27 25 23 29 29 C 1.50442 * 119.04490 * 179.75636 * 22 21 20 30 30 H 1.09004 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47605 * 300.00276 * 1 2 3 32 32 H 1.09002 * 109.47531 * 60.00204 * 1 2 3 33 33 H 1.08999 * 109.47605 * 239.99724 * 2 1 3 34 34 H 1.09002 * 109.47531 * 119.99796 * 2 1 3 35 35 H 0.96997 * 119.99720 * 180.02562 * 8 7 5 36 36 H 0.96992 * 119.99704 * 265.00045 * 13 3 2 37 37 H 0.96996 * 120.00247 * 354.73184 * 18 16 14 38 38 H 1.08004 * 119.79089 * 0.09785 * 20 19 18 39 39 H 1.08004 * 119.75717 * 179.88176 * 21 20 19 40 40 H 1.08005 * 120.14069 * 0.02562 * 24 19 18 41 41 H 1.08997 * 109.87511 * 283.01522 * 27 25 23 42 42 H 1.08996 * 109.87997 * 161.94480 * 27 25 23 43 43 H 1.09009 * 109.48627 * 176.01387 * 28 27 25 44 44 H 1.09003 * 109.50674 * 55.96970 * 28 27 25 45 45 H 1.09007 * 109.12117 * 277.96094 * 29 22 21 46 46 H 1.09000 * 109.12188 * 37.10596 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 5.4539 0.8797 1.3359 9 14 3.0962 0.1101 2.5708 10 1 2.8744 -1.3259 2.2647 11 1 3.7940 0.2361 3.8755 12 1 1.7880 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3402 2.6319 -0.4338 16 6 0.0423 3.3375 -2.6411 17 8 0.8192 3.3736 -3.5729 18 7 -1.1752 3.9040 -2.7564 19 6 -1.5028 4.6285 -3.9057 20 6 -2.8095 4.6277 -4.3823 21 6 -3.1395 5.3394 -5.5187 22 6 -2.1759 6.0644 -6.1975 23 6 -0.8630 6.0720 -5.7221 24 6 -0.5277 5.3548 -4.5713 25 6 0.1762 6.8460 -6.4294 26 8 1.2653 7.0358 -5.9314 27 6 -0.1662 7.3951 -7.7989 28 6 -1.5914 7.9586 -7.7233 29 6 -2.5700 6.8235 -7.4351 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.8769 0.4813 2.1125 36 1 2.2718 2.1231 -1.9977 37 1 -1.8241 3.8089 -2.0417 38 1 -3.5707 4.0667 -3.8604 39 1 -4.1571 5.3299 -5.8805 40 1 0.4880 5.3627 -4.2040 41 1 -0.1222 6.5969 -8.5398 42 1 0.5323 8.1882 -8.0654 43 1 -1.8478 8.4275 -8.6734 44 1 -1.6481 8.6991 -6.9254 45 1 -2.5838 6.1399 -8.2841 46 1 -3.5676 7.2401 -7.2960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128103596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:20 Heat of formation + Delta-G solvation = -81.867446 kcal Electronic energy + Delta-G solvation = -29536.611531 eV Core-core repulsion = 25391.119007 eV Total energy + Delta-G solvation = -4145.492524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19491 -40.29755 -38.89830 -38.06069 -36.31087 -35.62858 -34.27083 -32.44954 -31.63487 -31.54410 -30.23670 -28.23006 -27.72397 -25.15065 -23.89265 -23.08160 -22.53332 -21.88110 -20.65900 -19.80499 -19.66091 -18.60459 -17.51425 -16.90837 -16.52887 -16.07297 -15.99814 -15.74949 -15.41739 -15.27669 -15.06505 -14.73404 -14.47630 -14.26400 -13.97792 -13.76984 -13.51847 -13.49100 -13.22959 -13.05025 -12.58578 -12.42064 -12.18331 -12.04226 -11.90219 -11.76362 -11.57855 -11.42970 -11.22365 -11.19009 -10.94704 -10.72187 -10.48678 -10.01194 -9.84011 -9.64161 -9.35066 -9.32468 -9.18022 -8.83684 -8.35689 -8.29454 -6.25307 -4.29438 0.37444 0.91750 1.66524 2.16763 2.47504 3.18750 3.31329 3.33796 3.34663 3.57528 3.68334 3.95459 4.20735 4.25839 4.29474 4.50409 4.57173 4.69131 4.84052 4.85451 4.95550 5.06620 5.08543 5.14487 5.24344 5.36255 5.39601 5.51334 5.61169 5.69430 5.83880 5.91552 5.91832 5.96437 6.03860 6.07495 6.13244 6.51034 6.56894 6.61407 6.66952 6.78181 6.90664 7.06130 7.14886 7.29599 7.36122 7.66204 7.99520 8.35897 8.47955 8.75506 9.32724 10.86569 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.002388 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.941997 B =11720.655659 C =12771.569226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.084 0.916 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.659 5.659 14 C 0.498 3.502 15 O -0.530 6.530 16 C 0.506 3.494 17 O -0.497 6.497 18 N -0.652 5.652 19 C 0.135 3.865 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.051 4.051 23 C -0.150 4.150 24 C -0.063 4.063 25 C 0.397 3.603 26 O -0.444 6.444 27 C -0.163 4.163 28 C -0.114 4.114 29 C -0.085 4.085 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.269 0.731 36 H 0.409 0.591 37 H 0.424 0.576 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.148 0.852 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.629 10.703 -17.687 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.308 5.308 14 C 0.277 3.723 15 O -0.409 6.409 16 C 0.289 3.711 17 O -0.370 6.370 18 N -0.299 5.299 19 C 0.041 3.959 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.052 4.052 23 C -0.151 4.151 24 C -0.083 4.083 25 C 0.273 3.727 26 O -0.318 6.318 27 C -0.201 4.201 28 C -0.152 4.152 29 C -0.122 4.122 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.244 0.756 37 H 0.262 0.738 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.166 0.834 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.775 10.706 -17.227 28.328 hybrid contribution -0.494 -0.714 0.810 1.187 sum -20.269 9.992 -16.417 27.932 Atomic orbital electron populations 1.21890 0.96914 0.99428 1.02026 1.22316 0.94381 0.99564 1.01668 1.19373 0.96270 0.88703 0.81841 0.92734 1.21007 0.88184 1.40360 1.08216 0.89842 1.24823 0.94904 0.95050 0.97593 1.69860 1.08678 1.44035 1.29793 0.86910 0.80919 0.79988 0.80987 1.20109 1.22000 1.18430 1.46115 1.13625 1.52326 1.18723 1.19580 0.84358 0.81294 0.87117 1.90740 1.51261 1.59437 1.39436 1.20914 0.81807 0.79044 0.89316 1.90790 1.50323 1.56331 1.39543 1.43205 1.16464 1.50989 1.19242 1.17646 0.94005 0.94725 0.89537 1.21107 0.95043 1.00022 0.96779 1.20846 0.99463 0.97741 0.95179 1.20025 0.92094 0.96939 0.96156 1.20143 0.94705 1.02424 0.97851 1.21467 1.00722 0.92429 0.93686 1.22741 0.85732 0.76223 0.87975 1.90583 1.23645 1.49561 1.68011 1.22312 0.98851 1.02743 0.96194 1.21506 0.92746 0.97845 1.03067 1.20472 0.99784 0.96825 0.95071 0.94562 0.92644 0.93310 0.91890 0.92277 0.92129 0.75561 0.73755 0.84860 0.84865 0.83449 0.87897 0.88691 0.90077 0.91093 0.89690 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.51 37.15 0.32 -2.43 16 2 C -0.14 -3.03 5.11 -26.74 -0.14 -3.16 16 3 C 0.24 5.59 1.83 -69.08 -0.13 5.46 16 4 H 0.05 1.36 6.63 -51.92 -0.34 1.02 16 5 C -0.54 -14.52 9.31 -34.44 -0.32 -14.84 16 6 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 9 Si 0.88 21.19 24.41 -169.99 -4.15 17.04 16 10 H -0.27 -6.37 6.83 56.52 0.39 -5.98 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 13 N -0.66 -13.35 5.01 -55.39 -0.28 -13.63 16 14 C 0.50 9.19 6.46 -11.63 -0.08 9.11 16 15 O -0.53 -10.31 13.62 5.49 0.07 -10.24 16 16 C 0.51 8.24 7.62 -11.63 -0.09 8.16 16 17 O -0.50 -9.06 14.18 5.47 0.08 -8.99 16 18 N -0.65 -8.40 5.33 -10.32 -0.05 -8.46 16 19 C 0.14 1.64 6.27 -83.79 -0.53 1.11 16 20 C -0.11 -0.96 9.95 -39.32 -0.39 -1.36 16 21 C -0.11 -0.84 9.64 -39.58 -0.38 -1.22 16 22 C -0.05 -0.42 5.78 -104.17 -0.60 -1.02 16 23 C -0.15 -1.72 5.82 -105.01 -0.61 -2.33 16 24 C -0.06 -0.87 8.21 -38.90 -0.32 -1.19 16 25 C 0.40 4.64 6.89 -30.10 -0.21 4.44 16 26 O -0.44 -7.01 17.25 5.58 0.10 -6.91 16 27 C -0.16 -1.15 6.19 -27.28 -0.17 -1.32 16 28 C -0.11 -0.56 5.90 -26.70 -0.16 -0.72 16 29 C -0.08 -0.42 5.70 -28.20 -0.16 -0.58 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.08 7.85 -51.93 -0.41 0.68 16 32 H 0.05 0.89 5.64 -51.93 -0.29 0.60 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.33 3.22 -51.93 -0.17 1.16 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.41 8.01 8.01 -40.82 -0.33 7.68 16 37 H 0.42 4.60 8.30 -40.82 -0.34 4.26 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 39 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.15 2.46 6.08 -52.48 -0.32 2.14 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -32.96 372.08 -7.93 -40.90 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.02 Total: 9.83 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -4.05 Total: 0.25 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.44 Total: -47.49 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: 0.25 Total: -26.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.15 Total: 17.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.96 -7.93 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128103596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.972 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds