Wall clock time and date at job start Wed Apr 1 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46860 * 2 1 4 4 H 1.08999 * 109.47467 * 55.00155 * 3 2 1 5 5 C 1.50699 * 109.46932 * 175.00224 * 3 2 1 6 6 H 1.07999 * 119.99778 * 120.00312 * 5 3 2 7 7 C 1.37873 * 120.00165 * 299.99912 * 5 3 2 8 8 N 1.31514 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00170 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 60.00169 * 9 7 5 11 11 H 1.48496 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46747 * 300.00062 * 9 7 5 13 13 O 1.42902 * 109.47211 * 295.00290 * 3 2 1 14 14 C 1.34934 * 117.00097 * 90.00220 * 13 3 2 15 15 O 1.21653 * 119.99918 * 359.97438 * 14 13 3 16 16 C 1.41817 * 120.00162 * 179.72577 * 14 13 3 17 17 N 1.29522 * 125.28373 * 0.29549 * 16 14 13 18 18 N 1.39340 * 113.97364 * 179.97438 * 17 16 14 19 19 C 1.39595 * 125.53581 * 179.97438 * 18 17 16 20 20 C 1.38967 * 120.08165 * 179.74719 * 19 18 17 21 21 C 1.38089 * 119.92171 * 179.72309 * 20 19 18 22 22 C 1.38296 * 120.07890 * 0.55234 * 21 20 19 23 23 C 1.38306 * 120.16108 * 359.72448 * 22 21 20 24 24 C 1.38092 * 120.07632 * 359.97438 * 23 22 21 25 25 C 1.47130 * 108.92684 * 359.97438 * 18 17 16 26 26 H 1.08991 * 110.58598 * 241.30038 * 25 18 17 27 27 C 1.50707 * 110.57973 * 118.54819 * 25 18 17 28 28 C 1.50701 * 119.99626 * 166.45263 * 27 25 18 29 29 O 1.20759 * 119.99950 * 346.46104 * 27 25 18 30 30 C 1.51196 * 125.28676 * 179.97438 * 16 14 13 31 31 H 1.08996 * 109.47554 * 59.99994 * 1 2 3 32 32 H 1.09005 * 109.46679 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47152 * 299.99570 * 1 2 3 34 34 H 1.09002 * 109.46813 * 240.00107 * 2 1 3 35 35 H 1.08996 * 109.47308 * 120.00498 * 2 1 3 36 36 H 0.97007 * 119.99971 * 180.02562 * 8 7 5 37 37 H 1.07999 * 120.03831 * 359.97438 * 20 19 18 38 38 H 1.07995 * 119.95971 * 180.30030 * 21 20 19 39 39 H 1.07999 * 119.92321 * 179.70253 * 22 21 20 40 40 H 1.07998 * 119.96210 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.03615 * 180.02562 * 24 23 22 42 42 H 1.08994 * 109.46609 * 60.00766 * 28 27 25 43 43 H 1.09001 * 109.46643 * 180.02562 * 28 27 25 44 44 H 1.08994 * 109.47230 * 300.00306 * 28 27 25 45 45 H 1.08998 * 110.52328 * 298.63758 * 30 16 14 46 46 H 1.08997 * 110.53189 * 61.39212 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4063 0.3366 2.1727 9 14 6.0050 0.8813 1.3816 10 1 6.4995 2.2816 1.3820 11 1 6.3979 0.2168 2.6501 12 1 6.5975 0.1474 0.2346 13 8 1.6619 2.0814 -1.2210 14 6 0.4725 2.7185 -1.2363 15 8 -0.2242 2.7301 -0.2391 16 6 0.0369 3.3791 -2.4132 17 7 0.6934 3.4309 -3.5286 18 7 0.0444 4.1435 -4.5349 19 6 0.5321 4.3503 -5.8264 20 6 -0.2152 5.0775 -6.7450 21 6 0.2730 5.2849 -8.0200 22 6 1.4989 4.7602 -8.3867 23 6 2.2429 4.0310 -7.4769 24 6 1.7638 3.8249 -6.1983 25 6 -1.2383 4.6426 -4.0150 26 1 -2.0699 4.2292 -4.5854 27 6 -1.2728 6.1490 -4.0471 28 6 -2.5784 6.8769 -3.8562 29 8 -0.2542 6.7726 -4.2260 30 6 -1.2689 4.1264 -2.5630 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8294 -0.0612 2.9498 37 1 -1.1748 5.4835 -6.4609 38 1 -0.3050 5.8541 -8.7328 39 1 1.8761 4.9199 -9.3860 40 1 3.1996 3.6224 -7.7668 41 1 2.3454 3.2558 -5.4883 42 1 -2.9957 6.6247 -2.8814 43 1 -2.4064 7.9519 -3.9111 44 1 -3.2773 6.5807 -4.6384 45 1 -2.1134 3.4539 -2.4127 46 1 -1.3142 4.9608 -1.8632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188041522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:26 Heat of formation + Delta-G solvation = -50.751967 kcal Electronic energy + Delta-G solvation = -30168.902901 eV Core-core repulsion = 26024.759646 eV Total energy + Delta-G solvation = -4144.143255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39672 -41.41266 -39.92505 -39.44304 -37.80845 -35.57180 -34.51829 -33.40263 -33.20525 -31.83283 -30.44684 -30.22336 -29.31399 -26.43803 -25.48626 -24.89534 -23.47961 -22.73460 -22.02923 -20.95855 -20.73844 -19.06161 -18.87366 -18.63764 -17.91124 -17.47959 -17.20512 -17.01852 -16.46502 -16.19361 -16.07567 -15.74803 -15.32257 -15.15223 -14.90852 -14.77738 -14.41739 -14.31863 -14.27376 -13.86775 -13.54146 -13.40489 -13.32194 -13.18442 -13.15110 -13.04274 -12.99052 -12.84899 -12.58508 -12.50094 -12.18344 -12.17342 -11.90313 -11.76522 -11.61879 -11.40882 -11.18884 -10.83769 -10.59117 -10.53090 -9.94910 -8.58925 -8.29140 -6.45599 -0.45619 0.41000 0.61575 0.68307 1.04167 1.39141 1.42428 1.50395 1.83208 1.95835 2.38807 2.70143 2.79627 2.93786 2.99981 3.20633 3.66627 3.86195 3.92800 3.98441 4.01151 4.27011 4.29256 4.37925 4.39884 4.41065 4.50295 4.51802 4.53494 4.57405 4.66886 4.68789 4.76384 4.81733 5.06798 5.08397 5.17150 5.20500 5.31553 5.32685 5.44661 5.48164 5.60486 5.65484 5.74308 5.87824 6.06738 6.11625 6.31828 6.36337 6.56596 6.87842 7.24999 8.77312 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.003067 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.686911 B = 9125.841169 C =10406.991963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.222 3.778 4 H 0.014 0.986 5 C -0.554 4.554 6 H 0.058 0.942 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.976 3.024 10 H -0.272 1.272 11 H -0.272 1.272 12 H -0.267 1.267 13 O -0.347 6.347 14 C 0.532 3.468 15 O -0.515 6.515 16 C 0.008 3.992 17 N -0.160 5.160 18 N -0.448 5.448 19 C 0.198 3.802 20 C -0.169 4.169 21 C -0.079 4.079 22 C -0.155 4.155 23 C -0.089 4.089 24 C -0.183 4.183 25 C 0.052 3.948 26 H 0.166 0.834 27 C 0.345 3.655 28 C -0.192 4.192 29 O -0.479 6.479 30 C -0.083 4.083 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.272 0.728 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.150 0.850 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 10.467 -19.552 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.169 3.831 4 H 0.032 0.968 5 C -0.592 4.592 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.800 3.200 10 H -0.197 1.197 11 H -0.196 1.196 12 H -0.192 1.192 13 O -0.262 6.262 14 C 0.375 3.625 15 O -0.402 6.402 16 C -0.181 4.181 17 N 0.024 4.976 18 N -0.252 5.252 19 C 0.103 3.897 20 C -0.191 4.191 21 C -0.098 4.098 22 C -0.174 4.174 23 C -0.107 4.107 24 C -0.205 4.205 25 C -0.052 4.052 26 H 0.183 0.817 27 C 0.220 3.780 28 C -0.249 4.249 29 O -0.353 6.353 30 C -0.122 4.122 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.153 0.847 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.150 0.850 45 H 0.168 0.832 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.298 10.410 -19.612 26.409 hybrid contribution 0.630 -0.090 1.195 1.354 sum -13.668 10.320 -18.418 25.150 Atomic orbital electron populations 1.21722 0.95825 1.00865 1.00294 1.21897 0.94899 0.97867 1.02233 1.20080 0.94576 0.89647 0.78844 0.96832 1.21273 0.90661 1.40328 1.06922 0.92419 1.25715 1.04001 0.93776 0.94287 1.69981 1.37348 1.37622 1.09729 0.85335 0.78006 0.78675 0.78015 1.19703 1.19642 1.19162 1.86267 1.34823 1.62472 1.42641 1.18548 0.80606 0.76781 0.86530 1.90849 1.55415 1.59153 1.34799 1.22482 0.99004 1.05132 0.91513 1.75030 1.20962 1.03966 0.97634 1.48378 1.17533 1.51221 1.08028 1.17621 0.94322 0.97305 0.80421 1.20790 1.01266 1.02967 0.94078 1.21301 0.95955 0.97669 0.94840 1.21445 0.95506 0.99630 1.00847 1.21261 1.00321 0.97343 0.91805 1.20918 0.95956 1.04942 0.98669 1.23479 0.89124 0.96043 0.96580 0.81687 1.25608 0.92141 0.90173 0.70097 1.22364 0.93786 1.01429 1.07326 1.90501 1.38838 1.70138 1.35851 1.21950 0.95025 1.01259 0.93969 0.94569 0.91842 0.93783 0.94115 0.89304 0.91875 0.84721 0.82157 0.82952 0.84109 0.87457 0.86082 0.89725 0.85044 0.83193 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.55 71.98 0.62 -5.01 16 2 C -0.13 -6.71 5.48 30.60 0.17 -6.54 16 3 C 0.22 12.45 2.22 29.85 0.07 12.52 16 4 H 0.01 0.85 7.11 -2.39 -0.02 0.84 16 5 C -0.55 -32.82 8.89 25.60 0.23 -32.59 16 6 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -52.44 11.29 21.45 0.24 -52.20 16 9 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 O -0.35 -17.94 9.61 -58.50 -0.56 -18.50 16 14 C 0.53 23.32 6.15 68.71 0.42 23.74 16 15 O -0.52 -23.37 13.96 19.33 0.27 -23.10 16 16 C 0.01 0.28 7.09 43.94 0.31 0.59 16 17 N -0.16 -5.83 11.25 -46.37 -0.52 -6.35 16 18 N -0.45 -12.93 3.53 -319.36 -1.13 -14.06 16 19 C 0.20 5.50 6.20 38.25 0.24 5.74 16 20 C -0.17 -3.45 8.68 22.41 0.19 -3.26 16 21 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 22 C -0.16 -2.68 10.04 22.30 0.22 -2.46 16 23 C -0.09 -1.99 10.04 22.25 0.22 -1.76 16 24 C -0.18 -5.39 9.64 22.41 0.22 -5.17 16 25 C 0.05 0.98 3.13 44.51 0.14 1.12 16 26 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 27 C 0.34 6.18 4.83 29.10 0.14 6.32 16 28 C -0.19 -1.30 10.26 71.24 0.73 -0.57 16 29 O -0.48 -13.77 16.39 -1.45 -0.02 -13.80 16 30 C -0.08 -1.78 6.31 30.39 0.19 -1.58 16 31 H 0.04 1.49 6.05 -2.39 -0.01 1.48 16 32 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.04 1.98 7.75 -2.39 -0.02 1.96 16 34 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.09 4.92 5.95 -2.39 -0.01 4.91 16 36 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 37 H 0.14 2.05 6.40 -2.91 -0.02 2.03 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.11 3.66 7.66 -2.91 -0.02 3.64 16 42 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 44 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.12 2.26 7.73 -2.39 -0.02 2.24 16 Total: -1.00 -80.30 385.63 6.08 -74.22 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.00 Total: 15.72 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.78 Total: -8.28 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.41 Total: -72.61 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -0.32 Total: -55.39 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -80.30 6.08 -74.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188041522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.470 kcal (2) G-P(sol) polarization free energy of solvation -80.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds