Wall clock time and date at job start Wed Apr 1 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 O 1.42898 * 109.47319 * 65.00075 * 3 2 1 14 14 C 1.34943 * 116.99770 * 270.00201 * 13 3 2 15 15 O 1.21648 * 119.99881 * 359.97438 * 14 13 3 16 16 C 1.41815 * 119.99635 * 180.02562 * 14 13 3 17 17 N 1.29518 * 125.29229 * 0.02562 * 16 14 13 18 18 N 1.39335 * 113.97990 * 179.97438 * 17 16 14 19 19 C 1.39598 * 125.53977 * 179.97438 * 18 17 16 20 20 C 1.38968 * 120.08278 * 179.75347 * 19 18 17 21 21 C 1.38089 * 119.92104 * 179.74642 * 20 19 18 22 22 C 1.38299 * 120.07650 * 0.50844 * 21 20 19 23 23 C 1.38305 * 120.16108 * 359.76624 * 22 21 20 24 24 C 1.38082 * 120.08230 * 359.97438 * 23 22 21 25 25 C 1.47133 * 108.92388 * 0.02562 * 18 17 16 26 26 H 1.08998 * 110.57534 * 241.29699 * 25 18 17 27 27 C 1.50694 * 110.58278 * 118.54882 * 25 18 17 28 28 C 1.50699 * 120.00405 * 166.45099 * 27 25 18 29 29 O 1.20763 * 120.00316 * 346.44805 * 27 25 18 30 30 C 1.51198 * 125.28401 * 179.71738 * 16 14 13 31 31 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 33 33 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 34 34 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 35 35 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 36 36 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 37 37 H 1.08003 * 120.03509 * 359.97437 * 20 19 18 38 38 H 1.07995 * 119.95762 * 180.27428 * 21 20 19 39 39 H 1.07995 * 119.91893 * 179.74693 * 22 21 20 40 40 H 1.08000 * 119.95473 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.04282 * 180.02562 * 24 23 22 42 42 H 1.09004 * 109.47270 * 89.99433 * 28 27 25 43 43 H 1.08994 * 109.47702 * 210.00104 * 28 27 25 44 44 H 1.09007 * 109.46621 * 330.00194 * 28 27 25 45 45 H 1.08998 * 110.52843 * 298.64491 * 30 16 14 46 46 H 1.09006 * 110.52455 * 61.39453 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 8 1.6621 2.0814 1.2210 14 6 0.4726 2.7185 1.2363 15 8 -0.2236 2.7308 0.2389 16 6 0.0349 3.3746 2.4149 17 7 0.6917 3.4272 3.5300 18 7 0.0406 4.1356 4.5378 19 6 0.5278 4.3414 5.8297 20 6 -0.2170 5.0732 6.7467 21 6 0.2657 5.2702 8.0254 22 6 1.4936 4.7491 8.3906 23 6 2.2402 4.0251 7.4789 24 6 1.7615 3.8196 6.2002 25 6 -1.2443 4.6307 4.0194 26 1 -1.2744 5.7199 4.0470 27 6 -2.3916 4.0504 4.8055 28 6 -3.7731 4.6361 4.6662 29 8 -2.2040 3.1160 5.5472 30 6 -1.2682 4.1270 2.5630 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.8292 -0.0607 -2.9502 37 1 -1.1739 5.4842 6.4607 38 1 -0.3147 5.8351 8.7398 39 1 1.8705 4.9083 9.3901 40 1 3.1989 3.6201 7.7676 41 1 2.3448 3.2538 5.4889 42 1 -4.3045 4.1263 3.8625 43 1 -4.3184 4.5074 5.6011 44 1 -3.6957 5.6983 4.4339 45 1 -1.3069 4.9651 1.8671 46 1 -2.1152 3.4591 2.4058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188041540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:31 Heat of formation + Delta-G solvation = -31.046299 kcal Electronic energy + Delta-G solvation = -30190.237682 eV Core-core repulsion = 26046.948928 eV Total energy + Delta-G solvation = -4143.288754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32546 -39.83482 -39.05354 -38.36320 -36.00807 -33.70424 -33.31398 -32.40310 -31.34466 -30.97413 -29.72616 -29.21967 -27.36860 -24.96794 -24.55542 -23.07962 -22.49790 -21.71214 -20.24319 -20.07316 -19.19737 -18.06644 -17.35589 -17.02084 -16.71112 -16.23484 -15.67156 -15.57502 -15.36984 -15.12000 -14.88003 -14.56856 -14.25568 -14.16382 -13.51450 -13.44909 -13.35099 -13.06351 -12.93873 -12.79461 -12.72373 -12.38418 -12.21813 -11.95912 -11.66666 -11.52940 -11.37951 -11.27377 -11.21224 -10.97847 -10.74148 -10.64043 -10.32002 -10.24204 -10.02909 -9.75287 -9.69576 -9.38537 -9.06643 -8.80336 -8.44531 -7.60731 -6.17729 -4.24502 0.81628 1.29249 1.43435 1.62415 2.07148 3.24909 3.26136 3.32065 3.34713 3.40012 3.56566 3.74969 3.81938 4.11459 4.33302 4.50824 4.60594 4.76394 4.81710 4.92549 4.95017 5.02949 5.08274 5.14882 5.26023 5.29503 5.34774 5.46343 5.51915 5.53994 5.85198 5.97344 6.21655 6.26136 6.28860 6.33979 6.43260 6.47082 6.61605 6.83305 6.92389 6.97104 7.13472 7.14784 7.16870 7.44157 7.60830 7.72185 7.88350 8.14452 8.53970 8.87163 9.40599 10.89111 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.003112 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.825241 B = 8994.712709 C =10678.090921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.216 3.784 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.328 6.328 14 C 0.532 3.468 15 O -0.500 6.500 16 C 0.036 3.964 17 N -0.131 5.131 18 N -0.451 5.451 19 C 0.230 3.770 20 C -0.171 4.171 21 C -0.082 4.082 22 C -0.161 4.161 23 C -0.081 4.081 24 C -0.151 4.151 25 C 0.058 3.942 26 H 0.122 0.878 27 C 0.340 3.660 28 C -0.200 4.200 29 O -0.425 6.425 30 C -0.091 4.091 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.266 0.734 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 11.837 16.227 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.163 3.837 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.241 6.241 14 C 0.374 3.626 15 O -0.387 6.387 16 C -0.155 4.155 17 N 0.055 4.945 18 N -0.252 5.252 19 C 0.134 3.866 20 C -0.194 4.194 21 C -0.101 4.101 22 C -0.180 4.180 23 C -0.100 4.100 24 C -0.173 4.173 25 C -0.049 4.049 26 H 0.139 0.861 27 C 0.212 3.788 28 C -0.257 4.257 29 O -0.295 6.295 30 C -0.131 4.131 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.139 0.861 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.322 10.938 16.592 22.872 hybrid contribution 0.023 0.226 -0.650 0.689 sum -11.298 11.164 15.942 22.504 Atomic orbital electron populations 1.21873 0.98457 0.99161 1.00576 1.22062 0.92569 0.99396 1.03525 1.20399 0.95339 0.88944 0.78987 0.93371 1.21039 0.89459 1.38995 1.06264 0.91228 1.24874 0.99219 0.94733 0.95036 1.69886 1.35360 1.37845 1.09468 0.86286 0.83922 0.78736 0.77290 1.20342 1.20990 1.19604 1.86291 1.32544 1.61469 1.43823 1.18051 0.81950 0.77394 0.85193 1.90881 1.55389 1.58547 1.33869 1.22705 0.96225 1.03687 0.92901 1.75163 1.19881 1.03002 0.96456 1.48214 1.15555 1.52770 1.08690 1.17247 0.93456 0.95643 0.80239 1.20474 1.00446 1.04374 0.94074 1.20802 0.95841 0.98669 0.94789 1.21028 0.95718 1.01362 0.99929 1.21009 0.99503 0.97008 0.92475 1.20901 0.95301 1.03301 0.97758 1.23014 0.85494 1.01697 0.94667 0.86095 1.24953 0.91536 0.82834 0.79522 1.22274 0.94753 1.03230 1.05486 1.90497 1.85829 1.22915 1.30265 1.21799 0.96775 1.01510 0.92978 0.94697 0.95197 0.92659 0.87224 0.93877 0.92397 0.86884 0.85817 0.86082 0.85507 0.84525 0.87949 0.89081 0.89230 0.86128 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.55 37.16 0.32 -2.81 16 2 C -0.14 -3.43 5.48 -26.73 -0.15 -3.57 16 3 C 0.22 5.72 2.22 -27.88 -0.06 5.66 16 4 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 5 C -0.52 -14.56 8.89 -34.44 -0.31 -14.87 16 6 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 O -0.33 -7.93 9.61 -41.16 -0.40 -8.33 16 14 C 0.53 11.11 6.15 32.10 0.20 11.30 16 15 O -0.50 -10.91 13.96 -19.38 -0.27 -11.18 16 16 C 0.04 0.61 7.09 -81.96 -0.58 0.03 16 17 N -0.13 -2.29 11.25 33.99 0.38 -1.91 16 18 N -0.45 -6.51 3.53 -52.30 -0.18 -6.70 16 19 C 0.23 3.21 6.20 -83.78 -0.52 2.69 16 20 C -0.17 -1.96 8.68 -39.37 -0.34 -2.30 16 21 C -0.08 -0.82 10.04 -39.61 -0.40 -1.21 16 22 C -0.16 -1.61 10.04 -39.53 -0.40 -2.01 16 23 C -0.08 -0.93 10.04 -39.61 -0.40 -1.32 16 24 C -0.15 -2.12 9.64 -39.37 -0.38 -2.50 16 25 C 0.06 0.60 3.12 -68.15 -0.21 0.39 16 26 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 27 C 0.34 3.39 4.83 -29.04 -0.14 3.25 16 28 C -0.20 -1.05 10.25 36.01 0.37 -0.69 16 29 O -0.42 -6.13 16.41 6.00 0.10 -6.03 16 30 C -0.09 -1.04 6.32 -27.05 -0.17 -1.21 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.63 6.05 -51.93 -0.31 0.31 16 33 H 0.05 1.24 7.75 -51.93 -0.40 0.83 16 34 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 35 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.11 1.07 6.40 -52.48 -0.34 0.74 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.14 2.08 7.66 -52.49 -0.40 1.68 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.24 8.12 -51.93 -0.42 -0.18 16 45 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.11 1.11 7.73 -51.93 -0.40 0.71 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -33.65 385.64 -8.52 -42.17 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.31 Total: 1.85 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.26 Total: -7.52 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.82 Total: -32.86 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.57 Total: -25.54 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.65 -8.52 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188041540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.123 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds