Wall clock time and date at job start Wed Apr 1 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35948 * 117.00083 * 2 1 4 4 C 1.37998 * 120.05565 * 359.72595 * 3 2 1 5 5 C 1.40275 * 119.69401 * 179.77578 * 4 3 2 6 6 C 1.46383 * 120.10121 * 180.25020 * 5 4 3 7 7 C 1.37858 * 120.00212 * 46.79425 * 6 5 4 8 8 C 1.43199 * 120.00444 * 190.30084 * 7 6 5 9 9 N 7.59162 * 67.07553 * 4.95533 * 2 1 3 10 10 C 1.47116 * 119.99856 * 10.30592 * 7 6 5 11 11 O 1.21649 * 120.00076 * 7.18786 * 10 7 6 12 12 N 1.34776 * 120.00173 * 187.19178 * 10 7 6 13 13 C 1.46502 * 120.00331 * 179.97438 * 12 10 7 14 14 C 1.52994 * 109.47413 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47469 * 64.99657 * 14 13 12 16 16 C 1.52995 * 109.47265 * 184.99875 * 14 13 12 17 17 C 1.40284 * 119.79773 * 0.53876 * 5 4 3 18 18 C 1.36536 * 120.10528 * 359.68969 * 17 5 4 19 19 C 1.39135 * 120.31016 * 0.03867 * 18 17 5 20 20 O 1.35547 * 119.90299 * 179.97438 * 19 18 17 21 21 C 1.34723 * 116.99458 * 354.26402 * 20 19 18 22 22 H 1.07996 * 120.00295 * 5.06513 * 21 20 19 23 23 C 1.38767 * 120.00060 * 185.06327 * 21 20 19 24 24 N 1.31477 * 119.99616 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00228 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47260 * 60.00110 * 25 23 21 27 27 H 1.48501 * 109.47038 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47103 * 299.99433 * 25 23 21 29 29 H 1.08996 * 109.47469 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46890 * 59.99753 * 1 2 3 31 31 H 1.08997 * 109.47042 * 300.00171 * 1 2 3 32 32 H 1.08000 * 120.15300 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.99885 * 226.80198 * 6 5 4 34 34 H 0.97004 * 119.99983 * 359.97438 * 12 10 7 35 35 H 1.09005 * 109.46561 * 299.99931 * 13 12 10 36 36 H 1.09004 * 109.46720 * 59.99365 * 13 12 10 37 37 H 1.09003 * 109.46914 * 304.99824 * 14 13 12 38 38 H 1.09004 * 109.47139 * 300.00624 * 15 14 13 39 39 H 1.09003 * 109.46916 * 60.00169 * 15 14 13 40 40 H 1.08999 * 109.47125 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.46979 * 59.99745 * 16 14 13 42 42 H 1.08999 * 109.47356 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.47420 * 300.00196 * 16 14 13 44 44 H 1.08000 * 119.95005 * 179.70862 * 17 5 4 45 45 H 1.07999 * 119.84486 * 180.02562 * 18 17 5 46 46 H 0.97003 * 120.00527 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2958 2.3694 -0.0057 5 6 1.9405 3.6152 -0.0009 6 6 1.1532 4.8493 -0.0014 7 6 0.0902 4.9891 0.8652 8 6 -0.8122 6.0914 0.7196 9 7 -1.5280 6.9659 0.6040 10 6 -0.1170 4.0059 1.9398 11 8 0.7181 3.1459 2.1467 12 7 -1.2322 4.0578 2.6949 13 6 -1.4389 3.0784 3.7646 14 6 -2.7712 3.3588 4.4625 15 6 -3.9203 3.1317 3.4782 16 6 -2.9294 2.4164 5.6573 17 6 3.3421 3.6748 -0.0018 18 6 4.0766 2.5238 -0.0009 19 6 3.4417 1.2858 0.0001 20 8 4.1789 0.1483 0.0004 21 6 5.5138 0.2847 -0.1202 22 1 5.9574 1.2694 -0.1291 23 6 6.3188 -0.8399 -0.2329 24 7 5.7788 -2.0386 -0.2215 25 14 8.1698 -0.6508 -0.3994 26 1 8.7045 0.0550 0.7927 27 1 8.7972 -1.9929 -0.5021 28 1 8.4791 0.1355 -1.6205 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 0.2171 2.3168 -0.0106 33 1 1.4051 5.6502 -0.6808 34 1 -1.8980 4.7437 2.5301 35 1 -1.4549 2.0746 3.3399 36 1 -0.6271 3.1539 4.4881 37 1 -2.7891 4.3919 4.8097 38 1 -3.8076 3.8031 2.6269 39 1 -3.9025 2.0986 3.1309 40 1 -4.8695 3.3319 3.9753 41 1 -2.1107 2.5782 6.3585 42 1 -3.8784 2.6164 6.1547 43 1 -2.9114 1.3833 5.3101 44 1 3.8410 4.6327 -0.0028 45 1 5.1553 2.5747 -0.0012 46 1 6.3415 -2.8249 -0.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255395025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:07 Heat of formation + Delta-G solvation = -25.225909 kcal Electronic energy + Delta-G solvation = -29804.507280 eV Core-core repulsion = 25661.470917 eV Total energy + Delta-G solvation = -4143.036363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13155 -39.35844 -37.60257 -37.17252 -36.59554 -36.09975 -33.26750 -33.12658 -32.31510 -29.57151 -29.00005 -27.49419 -27.00939 -26.30216 -25.55475 -23.50696 -21.64776 -21.46614 -20.75214 -20.25609 -18.57157 -18.10159 -17.59564 -16.29797 -16.23678 -15.69974 -15.39728 -15.15064 -14.94451 -14.78927 -14.52309 -14.34227 -13.92152 -13.78809 -13.65824 -13.55298 -13.47782 -13.38393 -13.04358 -12.83406 -12.69927 -12.56034 -12.32393 -12.28546 -11.82408 -11.62362 -11.48507 -11.41420 -11.21055 -11.15702 -11.02451 -11.01462 -10.68730 -10.58305 -10.46985 -9.69993 -9.55119 -9.32880 -9.03186 -8.84012 -7.69810 -6.88133 -6.59777 -4.08893 0.53999 2.29179 2.33421 2.58116 2.78718 3.07082 3.09009 3.11268 3.19769 3.68802 3.85593 3.96662 4.06229 4.46247 4.47806 4.58366 4.72319 4.85994 4.97176 5.05525 5.18033 5.24131 5.32648 5.41550 5.51485 5.52218 5.56690 5.60527 5.64042 5.66328 5.68315 5.81386 5.84038 5.91583 5.93336 5.98301 6.03051 6.26415 6.34871 6.43032 6.54983 6.86982 7.01773 7.12742 7.24550 7.43910 7.49750 7.56204 7.81822 8.19602 8.35996 8.83323 9.54235 10.55941 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.002875 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.953094 B = 9737.628269 C =10844.032773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.304 6.304 3 C 0.045 3.955 4 C -0.075 4.075 5 C -0.180 4.180 6 C 0.119 3.881 7 C -0.196 4.196 8 C 0.263 3.737 9 N -0.442 5.442 10 C 0.565 3.435 11 O -0.498 6.498 12 N -0.735 5.735 13 C 0.126 3.874 14 C -0.109 4.109 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.043 4.043 18 C -0.231 4.231 19 C 0.160 3.840 20 O -0.145 6.145 21 C -0.389 4.389 22 H 0.098 0.902 23 C 0.041 3.959 24 N -0.844 5.844 25 Si 0.945 3.055 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.267 1.267 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.394 0.606 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.113 0.887 45 H 0.136 0.864 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.343 9.663 4.704 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.001 3.999 4 C -0.095 4.095 5 C -0.182 4.182 6 C 0.095 3.905 7 C -0.203 4.203 8 C -0.050 4.050 9 N -0.119 5.119 10 C 0.352 3.648 11 O -0.373 6.373 12 N -0.389 5.389 13 C 0.002 3.998 14 C -0.128 4.128 15 C -0.206 4.206 16 C -0.203 4.203 17 C -0.062 4.062 18 C -0.251 4.251 19 C 0.102 3.898 20 O -0.045 6.045 21 C -0.464 4.464 22 H 0.115 0.885 23 C -0.166 4.166 24 N -0.475 5.475 25 Si 0.768 3.232 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.132 0.868 33 H 0.152 0.848 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.153 0.847 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.709 9.599 4.722 17.389 hybrid contribution 0.501 0.408 0.011 0.646 sum -13.208 10.007 4.733 17.233 Atomic orbital electron populations 1.22850 0.80491 1.02699 1.00190 1.86209 1.19301 1.26302 1.89963 1.17894 0.89212 0.84520 1.08309 1.20565 0.97739 0.90462 1.00718 1.17823 0.92739 0.90704 1.16899 1.22958 0.86206 0.94120 0.87243 1.17994 1.01466 0.96452 1.04419 1.25724 0.93189 0.92698 0.93399 1.81247 1.10729 1.10920 1.09010 1.17642 0.81647 0.84064 0.81484 1.91020 1.42321 1.35262 1.68660 1.45986 1.22568 1.34376 1.35954 1.21403 0.96583 0.92592 0.89213 1.21362 0.94493 1.00692 0.96256 1.21873 0.97693 1.02227 0.98851 1.21757 1.01951 0.99494 0.97052 1.20466 0.91731 0.97473 0.96528 1.20472 1.00613 0.90820 1.13193 1.18938 0.88243 0.87474 0.95105 1.83955 1.19690 1.26216 1.74642 1.21508 0.78500 0.95069 1.51320 0.88477 1.25421 1.00880 0.94138 0.96132 1.70022 1.36802 0.97849 1.42854 0.85722 0.79818 0.78193 0.79437 1.19219 1.20118 1.19211 0.89246 0.93879 0.93502 0.86795 0.84775 0.77251 0.91219 0.91279 0.90754 0.92781 0.92189 0.92482 0.92247 0.92290 0.92141 0.86882 0.84676 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.66 10.28 -34.11 -0.35 -7.01 16 3 C 0.05 0.99 6.70 -39.11 -0.26 0.73 16 4 C -0.08 -1.36 5.70 -38.90 -0.22 -1.58 16 5 C -0.18 -2.94 4.47 -105.09 -0.47 -3.41 16 6 C 0.12 1.48 9.50 -36.44 -0.35 1.13 16 7 C -0.20 -2.45 5.76 -104.51 -0.60 -3.06 16 8 C 0.26 3.22 14.21 -22.47 -0.32 2.90 16 9 N -0.44 -5.99 18.54 41.84 0.78 -5.21 16 10 C 0.56 7.86 6.91 -12.66 -0.09 7.77 16 11 O -0.50 -8.79 12.44 5.23 0.07 -8.73 16 12 N -0.74 -8.20 5.23 -61.48 -0.32 -8.52 16 13 C 0.13 1.29 5.06 -4.04 -0.02 1.27 16 14 C -0.11 -0.84 2.96 -90.62 -0.27 -1.11 16 15 C -0.15 -1.08 9.07 37.16 0.34 -0.74 16 16 C -0.14 -1.00 9.19 37.16 0.34 -0.66 16 17 C -0.04 -0.74 9.74 -39.43 -0.38 -1.12 16 18 C -0.23 -4.76 9.09 -39.86 -0.36 -5.13 16 19 C 0.16 3.83 6.68 -38.69 -0.26 3.58 16 20 O -0.14 -4.08 9.52 -13.56 -0.13 -4.21 16 21 C -0.39 -10.43 9.48 30.93 0.29 -10.13 16 22 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 23 C 0.04 1.09 5.50 -17.51 -0.10 1.00 16 24 N -0.84 -23.98 13.67 55.49 0.76 -23.22 16 25 Si 0.94 19.52 29.55 -169.99 -5.02 14.49 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 28 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 31 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.11 1.85 5.55 -52.49 -0.29 1.56 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.39 3.85 6.56 -40.82 -0.27 3.58 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.41 7.18 -51.93 -0.37 0.03 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.14 2.71 5.61 -52.49 -0.29 2.41 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -32.12 393.50 -6.11 -38.23 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.08 Total: 5.29 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.74 Total: -7.04 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.21 Total: -36.96 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.41 Total: -19.95 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.12 -6.11 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255395025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.002 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds