Wall clock time and date at job start Wed Apr 1 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35948 * 117.00083 * 2 1 4 4 C 1.37998 * 120.05565 * 359.72595 * 3 2 1 5 5 C 1.40275 * 119.69401 * 179.77578 * 4 3 2 6 6 C 1.46383 * 120.10121 * 180.25020 * 5 4 3 7 7 C 1.37858 * 120.00212 * 46.79425 * 6 5 4 8 8 C 1.43199 * 120.00444 * 190.30084 * 7 6 5 9 9 N 7.59162 * 67.07553 * 4.95533 * 2 1 3 10 10 C 1.47116 * 119.99856 * 10.30592 * 7 6 5 11 11 O 1.21649 * 120.00076 * 7.18786 * 10 7 6 12 12 N 1.34776 * 120.00173 * 187.19178 * 10 7 6 13 13 C 1.46502 * 120.00331 * 179.97438 * 12 10 7 14 14 C 1.52994 * 109.47413 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47469 * 64.99657 * 14 13 12 16 16 C 1.52995 * 109.47265 * 184.99875 * 14 13 12 17 17 C 1.40284 * 119.79773 * 0.53876 * 5 4 3 18 18 C 1.36536 * 120.10528 * 359.68969 * 17 5 4 19 19 C 1.39135 * 120.31016 * 0.03867 * 18 17 5 20 20 O 1.35547 * 119.90299 * 179.97438 * 19 18 17 21 21 C 1.34723 * 116.99458 * 354.26402 * 20 19 18 22 22 H 1.07996 * 120.00295 * 5.06513 * 21 20 19 23 23 C 1.38767 * 120.00060 * 185.06327 * 21 20 19 24 24 N 1.31477 * 119.99616 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00228 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47260 * 60.00110 * 25 23 21 27 27 H 1.48501 * 109.47038 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47103 * 299.99433 * 25 23 21 29 29 H 1.08996 * 109.47469 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46890 * 59.99753 * 1 2 3 31 31 H 1.08997 * 109.47042 * 300.00171 * 1 2 3 32 32 H 1.08000 * 120.15300 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.99885 * 226.80198 * 6 5 4 34 34 H 0.97004 * 119.99983 * 359.97438 * 12 10 7 35 35 H 1.09005 * 109.46561 * 299.99931 * 13 12 10 36 36 H 1.09004 * 109.46720 * 59.99365 * 13 12 10 37 37 H 1.09003 * 109.46914 * 304.99824 * 14 13 12 38 38 H 1.09004 * 109.47139 * 300.00624 * 15 14 13 39 39 H 1.09003 * 109.46916 * 60.00169 * 15 14 13 40 40 H 1.08999 * 109.47125 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.46979 * 59.99745 * 16 14 13 42 42 H 1.08999 * 109.47356 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.47420 * 300.00196 * 16 14 13 44 44 H 1.08000 * 119.95005 * 179.70862 * 17 5 4 45 45 H 1.07999 * 119.84486 * 180.02562 * 18 17 5 46 46 H 0.97003 * 120.00527 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2958 2.3694 -0.0057 5 6 1.9405 3.6152 -0.0009 6 6 1.1532 4.8493 -0.0014 7 6 0.0902 4.9891 0.8652 8 6 -0.8122 6.0914 0.7196 9 7 -1.5280 6.9659 0.6040 10 6 -0.1170 4.0059 1.9398 11 8 0.7181 3.1459 2.1467 12 7 -1.2322 4.0578 2.6949 13 6 -1.4389 3.0784 3.7646 14 6 -2.7712 3.3588 4.4625 15 6 -3.9203 3.1317 3.4782 16 6 -2.9294 2.4164 5.6573 17 6 3.3421 3.6748 -0.0018 18 6 4.0766 2.5238 -0.0009 19 6 3.4417 1.2858 0.0001 20 8 4.1789 0.1483 0.0004 21 6 5.5138 0.2847 -0.1202 22 1 5.9574 1.2694 -0.1291 23 6 6.3188 -0.8399 -0.2329 24 7 5.7788 -2.0386 -0.2215 25 14 8.1698 -0.6508 -0.3994 26 1 8.7045 0.0550 0.7927 27 1 8.7972 -1.9929 -0.5021 28 1 8.4791 0.1355 -1.6205 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8899 32 1 0.2171 2.3168 -0.0106 33 1 1.4051 5.6502 -0.6808 34 1 -1.8980 4.7437 2.5301 35 1 -1.4549 2.0746 3.3399 36 1 -0.6271 3.1539 4.4881 37 1 -2.7891 4.3919 4.8097 38 1 -3.8076 3.8031 2.6269 39 1 -3.9025 2.0986 3.1309 40 1 -4.8695 3.3319 3.9753 41 1 -2.1107 2.5782 6.3585 42 1 -3.8784 2.6164 6.1547 43 1 -2.9114 1.3833 5.3101 44 1 3.8410 4.6327 -0.0028 45 1 5.1553 2.5747 -0.0012 46 1 6.3415 -2.8249 -0.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255395025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:06 Heat of formation + Delta-G solvation = -46.048356 kcal Electronic energy + Delta-G solvation = -29805.410209 eV Core-core repulsion = 25661.470917 eV Total energy + Delta-G solvation = -4143.939292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49122 -40.74953 -39.23895 -38.26000 -37.70833 -37.36639 -34.58220 -34.27043 -33.93722 -31.10006 -30.41900 -28.27449 -28.07448 -27.54381 -27.15955 -24.80698 -23.16850 -22.71240 -21.78783 -21.32942 -19.96050 -19.47487 -19.21349 -17.80413 -17.32846 -16.97397 -16.64003 -16.54030 -16.27277 -16.21613 -15.70253 -15.53131 -15.31913 -15.22701 -14.97120 -14.77476 -14.56746 -14.43467 -14.06604 -13.90971 -13.85930 -13.76622 -13.48088 -13.30154 -13.07669 -12.93624 -12.89606 -12.67420 -12.56842 -12.18567 -12.08841 -11.98296 -11.94551 -11.86581 -11.66639 -11.31095 -11.01465 -10.76093 -10.45483 -10.06508 -9.17927 -8.50923 -8.43614 -6.07324 -0.61399 0.74521 0.86431 1.38418 1.49753 1.51995 1.55095 1.67538 2.19391 2.20452 2.56403 2.64603 2.77529 2.89624 3.20171 3.43874 3.73501 3.86502 3.91676 3.93205 4.09452 4.10492 4.31171 4.32702 4.39867 4.56883 4.58336 4.61839 4.66440 4.67696 4.75242 4.80749 4.84475 4.92890 4.97680 5.01917 5.02370 5.16111 5.19711 5.32912 5.36994 5.46183 5.49359 5.56808 5.69679 5.97976 6.07602 6.38489 6.47883 6.68856 6.99265 7.24567 7.82210 8.78473 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.002875 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.953094 B = 9737.628269 C =10844.032773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.025 3.975 4 C -0.069 4.069 5 C -0.149 4.149 6 C 0.126 3.874 7 C -0.166 4.166 8 C 0.282 3.718 9 N -0.447 5.447 10 C 0.559 3.441 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.124 3.876 14 C -0.101 4.101 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.048 4.048 18 C -0.230 4.230 19 C 0.111 3.889 20 O -0.214 6.214 21 C -0.415 4.415 22 H 0.109 0.891 23 C -0.023 4.023 24 N -0.916 5.916 25 Si 1.020 2.980 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.253 1.253 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.135 0.865 33 H 0.187 0.813 34 H 0.404 0.596 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.161 0.839 45 H 0.133 0.867 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.718 14.511 4.774 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C -0.019 4.019 4 C -0.088 4.088 5 C -0.150 4.150 6 C 0.103 3.897 7 C -0.173 4.173 8 C -0.032 4.032 9 N -0.124 5.124 10 C 0.346 3.654 11 O -0.417 6.417 12 N -0.372 5.372 13 C 0.001 3.999 14 C -0.120 4.120 15 C -0.205 4.205 16 C -0.203 4.203 17 C -0.067 4.067 18 C -0.249 4.249 19 C 0.059 3.941 20 O -0.119 6.119 21 C -0.490 4.490 22 H 0.127 0.873 23 C -0.221 4.221 24 N -0.553 5.553 25 Si 0.839 3.161 26 H -0.180 1.180 27 H -0.199 1.199 28 H -0.177 1.177 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.204 0.796 34 H 0.240 0.760 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.178 0.822 45 H 0.151 0.849 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.184 14.556 4.806 22.292 hybrid contribution 0.576 -0.539 0.121 0.798 sum -15.608 14.018 4.927 21.549 Atomic orbital electron populations 1.23136 0.77655 1.04522 1.01340 1.86157 1.22451 1.27236 1.90256 1.18277 0.89072 0.85682 1.08909 1.20857 0.98584 0.90033 0.99312 1.18298 0.93138 0.91736 1.11841 1.23229 0.84849 0.93461 0.88177 1.17900 1.00501 0.95473 1.03452 1.25290 0.92757 0.92124 0.92998 1.81319 1.10823 1.11059 1.09234 1.17961 0.81759 0.83810 0.81889 1.91047 1.43876 1.37011 1.69803 1.45935 1.21821 1.34272 1.35209 1.21476 0.97867 0.91865 0.88741 1.21319 0.93001 1.01329 0.96328 1.21870 0.98016 1.01944 0.98707 1.21765 1.02638 0.99087 0.96768 1.20898 0.92025 0.98080 0.95652 1.20698 1.00980 0.91024 1.12214 1.19645 0.89460 0.88088 0.96929 1.83942 1.20190 1.28155 1.79631 1.21957 0.78976 0.95864 1.52231 0.87334 1.26683 1.06140 0.93516 0.95752 1.70188 1.38585 0.98810 1.47727 0.84628 0.73107 0.78281 0.80074 1.18027 1.19929 1.17719 0.87390 0.91803 0.92866 0.84759 0.79599 0.76033 0.92319 0.92400 0.89873 0.92910 0.92621 0.91189 0.92470 0.90897 0.92560 0.82159 0.84945 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 1.99 16 2 O -0.35 -16.03 10.28 -79.07 -0.81 -16.84 16 3 C 0.03 1.14 6.70 22.58 0.15 1.29 16 4 C -0.07 -2.39 5.70 22.71 0.13 -2.26 16 5 C -0.15 -4.34 4.47 -20.17 -0.09 -4.43 16 6 C 0.13 2.40 9.50 24.30 0.23 2.63 16 7 C -0.17 -3.30 5.76 -19.79 -0.11 -3.41 16 8 C 0.28 5.35 14.21 88.33 1.26 6.60 16 9 N -0.45 -9.86 18.54 19.00 0.35 -9.51 16 10 C 0.56 13.68 6.91 86.57 0.60 14.28 16 11 O -0.54 -18.01 12.44 -4.18 -0.05 -18.06 16 12 N -0.72 -13.85 5.23 -466.65 -2.44 -16.29 16 13 C 0.12 2.33 5.06 86.38 0.44 2.77 16 14 C -0.10 -1.30 2.96 -10.80 -0.03 -1.34 16 15 C -0.15 -1.73 9.07 71.98 0.65 -1.08 16 16 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 17 C -0.05 -1.51 9.74 22.37 0.22 -1.29 16 18 C -0.23 -9.61 9.09 22.09 0.20 -9.41 16 19 C 0.11 5.66 6.68 22.85 0.15 5.81 16 20 O -0.21 -13.22 9.52 -5.53 -0.05 -13.27 16 21 C -0.41 -24.11 9.48 67.95 0.64 -23.46 16 22 H 0.11 5.63 5.18 -2.91 -0.02 5.61 16 23 C -0.02 -1.29 5.50 84.87 0.47 -0.83 16 24 N -0.92 -57.04 13.67 21.63 0.30 -56.74 16 25 Si 1.02 42.45 29.55 68.60 2.03 44.47 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 29 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.06 1.68 7.65 -2.38 -0.02 1.66 16 31 H 0.05 1.55 7.67 -2.39 -0.02 1.54 16 32 H 0.13 4.03 5.55 -2.91 -0.02 4.02 16 33 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.40 6.32 6.56 -92.71 -0.61 5.71 16 35 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.63 7.18 -2.38 -0.02 0.61 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.13 5.48 5.61 -2.91 -0.02 5.46 16 46 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -80.11 393.50 6.41 -73.70 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.42 Total: 25.75 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 6.68 Total: -13.20 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.79 Total: -82.54 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -0.92 Total: -48.18 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -80.11 6.41 -73.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255395025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.648 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds