Wall clock time and date at job start Wed Apr 1 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 N 1.46496 * 109.47292 * 186.43614 * 3 2 1 5 5 C 1.36873 * 119.99964 * 282.21587 * 4 3 2 6 6 H 1.08004 * 119.99548 * 236.44862 * 5 4 3 7 7 C 1.39047 * 120.00446 * 56.44406 * 5 4 3 8 8 N 1.31367 * 119.99765 * 41.94534 * 7 5 4 9 9 Si 1.86793 * 120.00089 * 221.95208 * 7 5 4 10 10 H 1.48498 * 109.47309 * 59.99985 * 9 7 5 11 11 H 1.48504 * 109.46779 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47245 * 299.99506 * 9 7 5 13 13 C 1.34781 * 120.00225 * 102.20991 * 4 3 2 14 14 O 1.21589 * 120.00045 * 186.99434 * 13 4 3 15 15 C 1.47722 * 119.99820 * 6.99515 * 13 4 3 16 16 C 1.39646 * 120.15338 * 128.48751 * 15 13 4 17 17 C 1.37936 * 119.84803 * 180.02562 * 16 15 13 18 18 C 1.38374 * 120.15137 * 359.97064 * 17 16 15 19 19 C 1.50704 * 119.84487 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46993 * 90.00735 * 19 18 17 21 21 H 1.09000 * 110.54142 * 56.38682 * 20 19 18 22 22 C 1.54230 * 110.54389 * 179.44766 * 20 19 18 23 23 C 1.51311 * 103.55288 * 118.82430 * 22 20 19 24 24 O 1.21237 * 125.39214 * 179.89661 * 23 22 20 25 25 N 1.33871 * 109.21211 * 359.63683 * 23 22 20 26 26 C 1.33880 * 114.47283 * 0.23946 * 25 23 22 27 27 O 1.21225 * 125.39524 * 179.97438 * 26 25 23 28 28 C 1.38371 * 120.30504 * 0.28523 * 18 17 16 29 29 C 1.37938 * 120.15374 * 359.48107 * 28 18 17 30 30 H 1.09003 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47441 * 299.99840 * 1 2 3 32 32 H 1.09007 * 109.46993 * 60.00251 * 1 2 3 33 33 H 1.09002 * 109.47065 * 240.00096 * 2 1 3 34 34 H 1.08992 * 109.46867 * 120.00193 * 2 1 3 35 35 H 1.09001 * 109.46946 * 66.43442 * 3 2 1 36 36 H 1.09008 * 109.47435 * 306.43587 * 3 2 1 37 37 H 0.96993 * 120.00182 * 179.97438 * 8 7 5 38 38 H 1.08005 * 120.07567 * 359.97438 * 16 15 13 39 39 H 1.08005 * 119.92252 * 179.97438 * 17 16 15 40 40 H 1.08997 * 109.47406 * 330.00424 * 19 18 17 41 41 H 1.08999 * 109.46822 * 209.99869 * 19 18 17 42 42 H 1.08999 * 110.70880 * 0.26225 * 22 20 19 43 43 H 1.08994 * 110.50026 * 237.29665 * 22 20 19 44 44 H 0.97003 * 122.76627 * 180.24338 * 25 23 22 45 45 H 1.08001 * 119.92216 * 179.72144 * 28 18 17 46 46 H 1.07992 * 120.07742 * 180.23253 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4967 1.4454 -0.1548 5 6 4.2992 1.1529 0.9147 6 1 5.0533 1.8577 1.2327 7 6 4.1436 -0.0515 1.5919 8 7 3.9454 -1.1624 0.9192 9 14 4.2161 -0.0899 3.4580 10 1 3.1439 0.7747 4.0130 11 1 4.0223 -1.4838 3.9322 12 1 5.5390 0.4086 3.9124 13 6 4.0468 1.7361 -1.3504 14 8 5.2456 1.6153 -1.5136 15 6 3.1932 2.2015 -2.4626 16 6 3.5205 3.3677 -3.1575 17 6 2.7187 3.7968 -4.1946 18 6 1.5926 3.0742 -4.5474 19 6 0.7218 3.5490 -5.6820 20 6 1.2144 2.9355 -6.9942 21 1 1.2324 1.8479 -6.9249 22 6 0.3308 3.3949 -8.1718 23 6 1.2967 4.1323 -9.0734 24 8 1.0107 4.6597 -10.1269 25 7 2.5158 4.1150 -8.5207 26 6 2.5849 3.4692 -7.3500 27 8 3.5868 3.3330 -6.6812 28 6 1.2595 1.9206 -3.8597 29 6 2.0550 1.4774 -2.8236 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.7737 1.9220 0.9420 36 1 1.5856 1.9886 -0.8268 37 1 3.8372 -2.0026 1.3915 38 1 4.3990 3.9329 -2.8830 39 1 2.9705 4.6988 -4.7326 40 1 0.7713 4.6358 -5.7479 41 1 -0.3086 3.2424 -5.5020 42 1 -0.4568 4.0638 -7.8248 43 1 -0.0951 2.5345 -8.6879 44 1 3.2858 4.5358 -8.9342 45 1 0.3767 1.3638 -4.1373 46 1 1.7959 0.5749 -2.2902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266195001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:51 Heat of formation + Delta-G solvation = -66.367568 kcal Electronic energy + Delta-G solvation = -30147.500914 eV Core-core repulsion = 26002.680515 eV Total energy + Delta-G solvation = -4144.820399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16006 -39.60845 -38.89161 -37.69672 -36.22456 -35.28821 -34.36823 -32.51999 -31.56756 -31.01721 -30.56280 -27.75787 -25.79833 -25.38246 -24.38916 -22.36586 -22.22816 -21.93764 -20.77098 -20.58408 -19.28393 -18.19617 -17.14445 -16.99869 -16.46905 -16.32881 -15.68578 -15.49553 -14.96642 -14.81414 -14.55771 -14.54805 -14.24986 -14.18852 -13.73385 -13.66535 -13.47059 -13.25545 -12.92594 -12.72775 -12.43658 -12.21193 -12.11257 -11.79861 -11.54824 -11.43980 -11.42544 -11.05803 -11.01049 -10.78436 -10.72760 -10.66972 -10.59073 -10.36907 -10.30929 -10.22295 -9.87476 -8.69570 -8.50682 -8.31326 -8.08329 -7.27062 -6.38291 -3.99402 1.15817 1.47652 1.79502 2.39430 2.43944 3.19014 3.27228 3.31478 3.68496 3.73794 3.85941 3.95712 4.18711 4.28195 4.47817 4.77149 4.77591 4.84857 4.92878 5.01483 5.14562 5.20856 5.28596 5.42151 5.55037 5.59195 5.63939 5.74187 5.80175 5.83191 5.96091 6.07312 6.16604 6.27571 6.29471 6.36920 6.46903 6.49756 6.62314 6.72345 6.79422 6.94456 6.97293 7.02764 7.29979 7.40738 7.53070 7.60675 8.45491 8.60654 9.25860 9.36757 10.12148 10.59074 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024461 B = 0.002544 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.386484 B =11005.460003 C =11711.787521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.107 3.893 4 N -0.436 5.436 5 C -0.356 4.356 6 H 0.082 0.918 7 C 0.076 3.924 8 N -0.811 5.811 9 Si 0.883 3.117 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.503 3.497 14 O -0.560 6.560 15 C -0.092 4.092 16 C -0.082 4.082 17 C -0.093 4.093 18 C -0.100 4.100 19 C -0.059 4.059 20 C -0.121 4.121 21 H 0.128 0.872 22 C -0.156 4.156 23 C 0.531 3.469 24 O -0.491 6.491 25 N -0.684 5.684 26 C 0.522 3.478 27 O -0.450 6.450 28 C -0.120 4.120 29 C -0.099 4.099 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.267 0.733 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.414 0.586 45 H 0.120 0.880 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 7.106 -14.511 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C -0.017 4.017 4 N -0.156 5.156 5 C -0.481 4.481 6 H 0.099 0.901 7 C -0.136 4.136 8 N -0.442 5.442 9 Si 0.708 3.292 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.291 3.709 14 O -0.441 6.441 15 C -0.095 4.095 16 C -0.101 4.101 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.096 4.096 20 C -0.142 4.142 21 H 0.146 0.854 22 C -0.195 4.195 23 C 0.319 3.681 24 O -0.363 6.363 25 N -0.350 5.350 26 C 0.308 3.692 27 O -0.318 6.318 28 C -0.138 4.138 29 C -0.118 4.118 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.253 0.747 45 H 0.138 0.862 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.991 6.939 -14.662 20.782 hybrid contribution 0.459 -0.085 0.661 0.809 sum -12.531 6.854 -14.001 20.001 Atomic orbital electron populations 1.21821 0.97650 1.00651 1.00760 1.22097 0.92774 0.98039 1.04583 1.21789 0.83189 0.96256 1.00500 1.43250 1.04075 1.61179 1.07103 1.18802 1.20754 1.02580 1.06008 0.90075 1.25399 0.94640 0.94029 0.99502 1.70405 1.39194 0.97888 1.36703 0.86735 0.79537 0.77195 0.85747 1.19607 1.21154 1.19529 1.18716 0.87866 0.82024 0.82251 1.90636 1.15509 1.56312 1.81677 1.20560 0.95479 0.95630 0.97842 1.21130 0.98687 0.95559 0.94730 1.20718 0.94273 0.99623 0.96460 1.19587 0.96633 0.96457 0.97338 1.20466 0.99297 1.00382 0.89479 1.22157 0.91640 1.04314 0.96132 0.85369 1.22616 0.98652 1.02929 0.95317 1.20811 0.83579 0.78447 0.85301 1.90821 1.80187 1.43630 1.21655 1.44856 1.13783 1.52701 1.23674 1.20835 0.91739 0.77021 0.79589 1.90926 1.35373 1.53828 1.51650 1.20824 1.00091 0.96328 0.96552 1.21610 0.93395 1.00051 0.96711 0.93457 0.93381 0.93554 0.92005 0.89615 0.92340 0.92039 0.92293 0.86011 0.86928 0.90541 0.88866 0.85805 0.85928 0.74662 0.86188 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.68 4.39 -26.73 -0.12 -2.80 16 3 C 0.11 2.20 4.80 -4.05 -0.02 2.18 16 4 N -0.44 -11.07 2.56 -115.93 -0.30 -11.36 16 5 C -0.36 -9.88 8.41 -15.00 -0.13 -10.01 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 7 C 0.08 2.00 3.94 -17.45 -0.07 1.93 16 8 N -0.81 -21.81 11.52 55.50 0.64 -21.17 16 9 Si 0.88 19.79 29.69 -169.99 -5.05 14.74 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 C 0.50 13.02 7.15 -12.38 -0.09 12.93 16 14 O -0.56 -16.98 17.03 5.29 0.09 -16.89 16 15 C -0.09 -1.88 4.94 -104.97 -0.52 -2.40 16 16 C -0.08 -1.50 9.75 -39.17 -0.38 -1.88 16 17 C -0.09 -1.34 7.43 -39.64 -0.29 -1.63 16 18 C -0.10 -1.19 4.74 -104.52 -0.50 -1.69 16 19 C -0.06 -0.41 4.69 -27.88 -0.13 -0.54 16 20 C -0.12 -0.76 3.13 -90.83 -0.28 -1.05 16 21 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 22 C -0.16 -0.64 6.67 -26.94 -0.18 -0.82 16 23 C 0.53 3.90 8.55 -11.09 -0.09 3.81 16 24 O -0.49 -5.30 18.02 5.59 0.10 -5.20 16 25 N -0.68 -5.05 5.48 -11.39 -0.06 -5.12 16 26 C 0.52 4.84 7.67 -11.08 -0.09 4.75 16 27 O -0.45 -6.17 15.04 5.61 0.08 -6.09 16 28 C -0.12 -1.56 9.68 -39.64 -0.38 -1.94 16 29 C -0.10 -1.70 7.43 -39.16 -0.29 -1.99 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.06 1.31 6.52 -51.93 -0.34 0.97 16 34 H 0.09 1.92 5.41 -51.93 -0.28 1.64 16 35 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 36 H 0.06 1.13 4.96 -51.92 -0.26 0.87 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.11 1.45 7.67 -52.48 -0.40 1.05 16 40 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 41 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.12 0.30 7.74 -51.93 -0.40 -0.10 16 43 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.41 2.66 8.96 -40.82 -0.37 2.29 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 2.38 4.79 -52.49 -0.25 2.13 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -36.08 377.46 -8.07 -44.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.08 Total: 4.27 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.19 Total: -3.03 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.28 Total: -37.65 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: 0.28 Total: -28.18 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.05 Total: 14.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.08 -8.07 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266195001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.213 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds