Wall clock time and date at job start Wed Apr 1 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 H 1.08997 * 110.53461 * 302.16843 * 3 2 1 5 5 C 1.51589 * 110.89641 * 179.34629 * 3 2 1 6 6 O 1.21234 * 127.15412 * 61.57348 * 5 3 2 7 7 N 1.34760 * 105.68435 * 241.64994 * 5 3 2 8 8 C 1.46501 * 124.17950 * 179.97438 * 7 5 3 9 9 C 1.50697 * 109.47278 * 269.72640 * 8 7 5 10 10 C 1.38307 * 119.93263 * 89.99442 * 9 8 7 11 11 C 1.38099 * 120.06781 * 179.97438 * 10 9 8 12 12 C 1.38880 * 119.92997 * 359.97438 * 11 10 9 13 13 O 1.35750 * 120.06482 * 179.97438 * 12 11 10 14 14 C 1.34833 * 117.00335 * 5.53090 * 13 12 11 15 15 H 1.07997 * 119.99574 * 354.94346 * 14 13 12 16 16 C 1.38653 * 120.00019 * 174.94064 * 14 13 12 17 17 N 1.31559 * 120.00125 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99860 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47055 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46778 * 119.99867 * 18 16 14 21 21 H 1.48497 * 109.47144 * 240.00123 * 18 16 14 22 22 C 1.38878 * 119.86454 * 0.25522 * 12 11 10 23 23 C 1.38102 * 119.93027 * 359.49020 * 22 12 11 24 24 C 1.33793 * 111.64709 * 359.65588 * 7 5 3 25 25 O 1.21534 * 123.77323 * 180.22770 * 24 7 5 26 26 N 1.34532 * 112.45643 * 0.23087 * 24 7 5 27 27 C 1.46495 * 126.68908 * 179.97438 * 26 24 7 28 28 C 1.52996 * 117.50194 * 8.64858 * 27 26 24 29 29 C 1.53000 * 117.50015 * 300.02388 * 27 26 24 30 30 H 1.09003 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46946 * 300.00124 * 1 2 3 32 32 H 1.08999 * 109.47026 * 59.99821 * 1 2 3 33 33 H 1.09001 * 109.46946 * 239.99876 * 2 1 3 34 34 H 1.08999 * 109.47026 * 120.00179 * 2 1 3 35 35 H 1.08995 * 109.47673 * 149.72033 * 8 7 5 36 36 H 1.09002 * 109.46662 * 29.72459 * 8 7 5 37 37 H 1.07997 * 119.96502 * 0.02562 * 10 9 8 38 38 H 1.07999 * 120.03393 * 180.02562 * 11 10 9 39 39 H 0.96996 * 120.00015 * 359.97438 * 17 16 14 40 40 H 1.07995 * 120.03434 * 179.72746 * 22 12 11 41 41 H 1.07995 * 119.96903 * 180.27365 * 23 22 12 42 42 H 1.09001 * 115.54650 * 154.35817 * 27 26 24 43 43 H 1.09002 * 117.49988 * 0.02562 * 28 27 26 44 44 H 1.08998 * 117.50024 * 145.01957 * 28 27 26 45 45 H 1.08996 * 117.50016 * 214.97862 * 29 27 26 46 46 H 1.08992 * 117.50074 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6551 1.9841 -0.8640 5 6 3.5553 1.4802 0.0162 6 8 4.3078 1.0354 -0.8239 7 7 3.8919 2.1095 1.1593 8 6 5.2708 2.3658 1.5824 9 6 5.7646 1.2094 2.4130 10 6 6.3950 0.1405 1.8022 11 6 6.8491 -0.9204 2.5607 12 6 6.6726 -0.9131 3.9382 13 8 7.1174 -1.9548 4.6864 14 6 7.8226 -2.9102 4.0477 15 1 7.9408 -2.8678 2.9751 16 6 8.3958 -3.9470 4.7680 17 7 8.2513 -3.9988 6.0746 18 14 9.3734 -5.2702 3.8832 19 1 9.3875 -4.9842 2.4261 20 1 10.7663 -5.2841 4.3979 21 1 8.7440 -6.5938 4.1222 22 6 6.0350 0.1594 4.5480 23 6 5.5878 1.2199 3.7847 24 6 2.8111 2.4775 1.8568 25 8 2.8606 3.0641 2.9200 26 7 1.6633 2.1254 1.2497 27 6 0.3040 2.3726 1.7367 28 6 0.1455 3.2769 2.9606 29 6 -0.0826 1.7694 3.0887 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.3051 3.2798 2.1753 36 1 5.9055 2.4790 0.7034 37 1 6.5330 0.1360 0.7311 38 1 7.3416 -1.7546 2.0832 39 1 7.7441 -3.3116 6.5341 40 1 5.8924 0.1660 5.6185 41 1 5.0959 2.0563 4.2587 42 1 -0.4683 2.4239 0.9692 43 1 1.0526 3.6884 3.4032 44 1 -0.7311 3.9236 2.9984 45 1 -1.1093 1.4245 3.2107 46 1 0.6742 1.1885 3.6155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277678497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:23 Heat of formation + Delta-G solvation = -12.086295 kcal Electronic energy + Delta-G solvation = -30500.766584 eV Core-core repulsion = 26358.299998 eV Total energy + Delta-G solvation = -4142.466586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58537 -39.22962 -38.91513 -37.70567 -36.73729 -36.29761 -34.73485 -32.75109 -32.20855 -30.30489 -30.09197 -27.65314 -26.03020 -24.80683 -23.95574 -22.69257 -22.52606 -22.07264 -21.59986 -20.86620 -19.75163 -18.41924 -17.69931 -17.16455 -16.86050 -16.47526 -16.29902 -15.45672 -15.14357 -15.06804 -14.88022 -14.56662 -14.32410 -14.15175 -14.01017 -13.76804 -13.66328 -13.43896 -13.25644 -13.02832 -12.73886 -12.52763 -11.94385 -11.90360 -11.78695 -11.70518 -11.47059 -11.31379 -11.15169 -11.02100 -10.91232 -10.75518 -10.46832 -10.37373 -10.32847 -10.03536 -9.68696 -9.44843 -8.92053 -8.81642 -8.28288 -7.36781 -6.82655 -4.11641 1.53922 1.72795 2.13509 2.25501 2.80621 2.92295 3.21671 3.29075 3.39045 3.56765 3.83075 4.07238 4.24984 4.45480 4.48675 4.48989 4.63256 4.70706 4.90371 4.95177 5.00917 5.01828 5.13252 5.15369 5.26708 5.30995 5.41506 5.46978 5.56529 5.63376 5.68979 5.73423 5.75794 5.79763 5.87188 5.93913 6.06151 6.12135 6.31388 6.36935 6.58473 6.78293 7.00254 7.05611 7.19745 7.27237 7.30494 7.52614 7.66828 8.02649 8.34455 8.85869 9.53885 10.61249 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.002828 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.105169 B = 9897.644315 C =10110.946867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.120 4.120 3 C 0.096 3.904 4 H 0.123 0.877 5 C 0.525 3.475 6 O -0.466 6.466 7 N -0.568 5.568 8 C 0.177 3.823 9 C -0.221 4.221 10 C -0.047 4.047 11 C -0.234 4.234 12 C 0.166 3.834 13 O -0.199 6.199 14 C -0.472 4.472 15 H 0.086 0.914 16 C 0.011 3.989 17 N -0.879 5.879 18 Si 1.102 2.898 19 H -0.283 1.283 20 H -0.278 1.278 21 H -0.279 1.279 22 C -0.200 4.200 23 C -0.045 4.045 24 C 0.703 3.297 25 O -0.536 6.536 26 N -0.597 5.597 27 C 0.105 3.895 28 C -0.185 4.185 29 C -0.190 4.190 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.283 0.717 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.136 12.809 -12.908 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.159 4.159 3 C -0.011 4.011 4 H 0.140 0.860 5 C 0.312 3.688 6 O -0.335 6.335 7 N -0.313 5.313 8 C 0.058 3.942 9 C -0.223 4.223 10 C -0.066 4.066 11 C -0.254 4.254 12 C 0.112 3.888 13 O -0.102 6.102 14 C -0.548 4.548 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.511 5.511 18 Si 0.926 3.074 19 H -0.208 1.208 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.220 4.220 23 C -0.064 4.064 24 C 0.406 3.594 25 O -0.410 6.410 26 N -0.334 5.334 27 C 0.002 3.998 28 C -0.222 4.222 29 C -0.229 4.229 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.841 11.440 -12.229 23.051 hybrid contribution -0.861 1.309 -0.361 1.608 sum -16.701 12.748 -12.590 24.494 Atomic orbital electron populations 1.21981 0.94224 1.02861 1.02597 1.21669 0.97439 0.92384 1.04397 1.22191 0.92539 0.96999 0.89333 0.85956 1.20778 0.90577 0.76423 0.81051 1.90793 1.58324 1.44182 1.40207 1.46781 1.08915 1.53896 1.21662 1.20386 0.77259 0.97530 0.99071 1.19323 1.10436 0.98585 0.93934 1.20706 0.94958 0.92364 0.98530 1.21151 1.09223 1.01286 0.93713 1.19295 0.91919 0.87363 0.90256 1.83664 1.61578 1.27960 1.37019 1.22322 1.33691 1.04436 0.94353 0.89651 1.26581 0.97664 0.98958 0.96295 1.70514 1.36851 1.35776 1.07919 0.82998 0.75951 0.74352 0.74110 1.20813 1.20412 1.20432 1.20189 1.07715 0.94385 0.99683 1.20592 0.96229 0.96830 0.92739 1.15928 0.80467 0.79469 0.83522 1.90859 1.85214 1.44745 1.20223 1.47009 1.04387 1.59588 1.22440 1.21356 0.81128 1.06249 0.91074 1.23749 1.05316 0.93656 0.99509 1.23469 1.02901 0.96892 0.99637 0.91825 0.91189 0.92423 0.89325 0.90584 0.88617 0.88825 0.87072 0.85326 0.90676 0.86586 0.86468 0.84523 0.85274 0.88203 0.87935 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.36 37.16 0.35 -0.65 16 2 C -0.12 -1.04 5.72 -26.73 -0.15 -1.20 16 3 C 0.10 0.90 3.52 -68.20 -0.24 0.66 16 4 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 5 C 0.53 6.77 7.67 -10.56 -0.08 6.69 16 6 O -0.47 -7.05 17.75 5.60 0.10 -6.95 16 7 N -0.57 -7.81 2.59 -122.02 -0.32 -8.13 16 8 C 0.18 2.51 5.82 -5.19 -0.03 2.48 16 9 C -0.22 -3.90 5.47 -104.57 -0.57 -4.48 16 10 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 11 C -0.23 -5.27 9.17 -39.39 -0.36 -5.63 16 12 C 0.17 4.08 6.65 -39.11 -0.26 3.82 16 13 O -0.20 -5.65 9.16 0.04 0.00 -5.65 16 14 C -0.47 -13.37 9.49 30.89 0.29 -13.08 16 15 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 16 C 0.01 0.30 5.49 -17.52 -0.10 0.20 16 17 N -0.88 -26.29 13.70 55.48 0.76 -25.53 16 18 Si 1.10 23.88 29.92 -169.99 -5.09 18.79 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.20 -4.34 9.99 -39.39 -0.39 -4.74 16 23 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 24 C 0.70 9.62 8.21 -88.01 -0.72 8.90 16 25 O -0.54 -8.50 14.38 5.34 0.08 -8.42 16 26 N -0.60 -6.22 3.07 -164.84 -0.51 -6.72 16 27 C 0.10 0.85 4.65 -67.94 -0.32 0.53 16 28 C -0.18 -1.64 9.83 -26.73 -0.26 -1.90 16 29 C -0.19 -1.65 9.85 -26.73 -0.26 -1.91 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 4.44 -51.93 -0.23 0.20 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.27 7.80 -51.93 -0.41 0.86 16 36 H 0.09 1.21 7.94 -51.93 -0.41 0.80 16 37 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.13 2.94 5.64 -52.49 -0.30 2.65 16 39 H 0.28 8.67 7.97 -40.82 -0.33 8.34 16 40 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 42 H 0.14 0.70 7.35 -51.93 -0.38 0.32 16 43 H 0.13 1.55 5.51 -51.93 -0.29 1.27 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -33.02 383.32 -9.13 -42.15 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.06 Total: 7.49 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.88 Total: -12.81 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.06 Total: -40.38 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.18 Total: -21.02 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.09 Total: 18.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.02 -9.13 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277678497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.067 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds