Wall clock time and date at job start Wed Apr 1 2020 03:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52988 * 109.47337 * 2 1 4 4 N 1.46504 * 109.47402 * 186.40297 * 3 2 1 5 5 C 1.34777 * 119.99670 * 98.77812 * 4 3 2 6 6 O 1.21550 * 119.99537 * 186.43660 * 5 4 3 7 7 C 1.47883 * 120.00436 * 6.16836 * 5 4 3 8 8 C 1.39918 * 120.03026 * 134.88881 * 7 5 4 9 9 C 1.38327 * 120.36167 * 179.97438 * 8 7 5 10 10 C 1.37753 * 120.41000 * 0.02562 * 9 8 7 11 11 C 1.40748 * 120.04377 * 0.02562 * 10 9 8 12 12 C 1.41433 * 120.17955 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99856 * 151.30996 * 12 11 10 14 14 C 1.39936 * 120.00154 * 331.30515 * 12 11 10 15 15 N 1.30822 * 119.99994 * 350.17783 * 14 12 11 16 16 Si 1.86804 * 119.99964 * 170.17678 * 14 12 11 17 17 H 1.48493 * 109.46944 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46930 * 120.00263 * 16 14 12 19 19 H 1.48499 * 109.46674 * 239.99987 * 16 14 12 20 20 C 1.39002 * 120.02356 * 314.61563 * 7 5 4 21 21 C 1.46497 * 119.99994 * 278.78655 * 4 3 2 22 22 H 1.08996 * 110.54215 * 359.29091 * 21 4 3 23 23 C 1.54229 * 110.60725 * 122.14431 * 21 4 3 24 24 C 1.51672 * 103.38366 * 118.47735 * 23 21 4 25 25 O 1.21230 * 125.36346 * 180.02562 * 24 23 21 26 26 N 1.33871 * 109.24295 * 0.11995 * 24 23 21 27 27 C 1.46503 * 122.76546 * 179.91363 * 26 24 23 28 28 C 1.33878 * 114.47529 * 359.92223 * 26 24 23 29 29 O 1.21227 * 125.39826 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.47678 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46914 * 300.00256 * 1 2 3 32 32 H 1.08992 * 109.47015 * 59.99813 * 1 2 3 33 33 H 1.08998 * 109.46914 * 239.99743 * 2 1 3 34 34 H 1.09002 * 109.46963 * 120.00039 * 2 1 3 35 35 H 1.09005 * 109.47664 * 66.40384 * 3 2 1 36 36 H 1.09001 * 109.47332 * 306.40159 * 3 2 1 37 37 H 1.08003 * 119.81628 * 0.02562 * 8 7 5 38 38 H 1.07995 * 119.79574 * 180.02562 * 9 8 7 39 39 H 1.08002 * 119.98182 * 180.02562 * 10 9 8 40 40 H 0.96999 * 120.00384 * 180.02562 * 15 14 12 41 41 H 1.07999 * 120.19899 * 359.97187 * 20 7 5 42 42 H 1.09001 * 110.60652 * 237.03309 * 23 21 4 43 43 H 1.09000 * 110.60512 * 359.97438 * 23 21 4 44 44 H 1.08993 * 109.47703 * 270.00290 * 27 26 24 45 45 H 1.08998 * 109.46599 * 30.00467 * 27 26 24 46 46 H 1.09002 * 109.46853 * 149.99986 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4969 1.4453 -0.1540 5 6 4.0461 1.6675 -1.3646 6 8 5.2467 1.5546 -1.5173 7 6 3.1873 2.0428 -2.5086 8 6 3.5691 3.0873 -3.3577 9 6 2.7714 3.4437 -4.4301 10 6 1.5919 2.7753 -4.6742 11 6 1.1907 1.7227 -3.8304 12 6 -0.0200 1.0348 -4.0781 13 1 -0.1248 0.0019 -3.7806 14 6 -1.0821 1.6926 -4.7086 15 7 -1.0316 2.9863 -4.8957 16 14 -2.5720 0.7232 -5.2830 17 1 -2.3847 -0.7129 -4.9548 18 1 -3.7877 1.2324 -4.5988 19 1 -2.7282 0.8797 -6.7514 20 6 2.0030 1.3545 -2.7444 21 6 4.3568 1.2064 1.0077 22 1 3.7555 1.0581 1.9046 23 6 5.2751 -0.0082 0.7628 24 6 6.6691 0.5845 0.8391 25 8 7.7029 -0.0334 0.7008 26 7 6.5775 1.8972 1.0854 27 6 7.7520 2.7626 1.2196 28 6 5.3243 2.3541 1.1991 29 8 5.0137 3.5047 1.4206 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7734 1.9222 0.9417 36 1 1.5862 1.9883 -0.8271 37 1 4.4922 3.6175 -3.1753 38 1 3.0751 4.2511 -5.0799 39 1 0.9745 3.0591 -5.5137 40 1 -1.7679 3.4424 -5.3324 41 1 1.7067 0.5445 -2.0945 42 1 5.1326 -0.7597 1.5394 43 1 5.0919 -0.4350 -0.2232 44 1 8.0664 2.7894 2.2628 45 1 8.5633 2.3717 0.6056 46 1 7.5001 3.7706 0.8900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283662454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:44 Heat of formation + Delta-G solvation = -65.633477 kcal Electronic energy + Delta-G solvation = -31279.989485 eV Core-core repulsion = 27135.200919 eV Total energy + Delta-G solvation = -4144.788566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09488 -39.71731 -38.52490 -37.23871 -36.24611 -35.74476 -33.87230 -33.51526 -31.68496 -30.01398 -29.69201 -27.09021 -26.33583 -25.74761 -25.37851 -23.09623 -21.87661 -21.52952 -20.91403 -20.06190 -19.02207 -17.70399 -17.19340 -17.05846 -16.64686 -15.87786 -15.82297 -15.33189 -15.21182 -15.15335 -14.52609 -14.32773 -14.03053 -13.93589 -13.77962 -13.40523 -13.23526 -13.01197 -12.90570 -12.66580 -12.61944 -12.32548 -12.10024 -11.92306 -11.74056 -11.65622 -11.29070 -11.21789 -11.06867 -10.88925 -10.78867 -10.56733 -10.48199 -10.28825 -10.08930 -9.78368 -9.55521 -9.36643 -9.25950 -8.67410 -7.66843 -7.55694 -6.83059 -4.53514 1.44268 2.15765 2.37116 2.64843 2.68600 3.01240 3.04681 3.05340 3.14723 3.38195 3.84620 4.01770 4.13368 4.26161 4.51815 4.71641 5.01684 5.08771 5.12055 5.19869 5.24286 5.31756 5.41903 5.46145 5.51818 5.56096 5.57336 5.66137 5.85375 6.01722 6.13513 6.16082 6.27494 6.33707 6.53146 6.57071 6.75232 6.76931 6.84106 6.93819 7.09860 7.21940 7.26958 7.45940 7.58342 7.74744 7.81502 7.85683 8.02381 8.42960 8.44322 8.73483 8.75253 10.10657 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003386 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.094095 B = 8268.282472 C = 9026.555045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.095 3.905 4 N -0.597 5.597 5 C 0.571 3.429 6 O -0.545 6.545 7 C -0.115 4.115 8 C -0.176 4.176 9 C -0.114 4.114 10 C -0.132 4.132 11 C 0.102 3.898 12 C -0.460 4.460 13 H 0.079 0.921 14 C 0.074 3.926 15 N -0.802 5.802 16 Si 0.909 3.091 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.273 1.273 20 C -0.200 4.200 21 C 0.118 3.882 22 H 0.138 0.862 23 C -0.163 4.163 24 C 0.548 3.452 25 O -0.489 6.489 26 N -0.565 5.565 27 C 0.071 3.929 28 C 0.525 3.475 29 O -0.474 6.474 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.280 0.720 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -3.787 11.646 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C -0.027 4.027 4 N -0.330 5.330 5 C 0.363 3.637 6 O -0.422 6.422 7 C -0.118 4.118 8 C -0.197 4.197 9 C -0.133 4.133 10 C -0.152 4.152 11 C 0.100 3.900 12 C -0.490 4.490 13 H 0.097 0.903 14 C -0.142 4.142 15 N -0.428 5.428 16 Si 0.733 3.267 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.198 1.198 20 C -0.219 4.219 21 C 0.010 3.990 22 H 0.156 0.844 23 C -0.203 4.203 24 C 0.337 3.663 25 O -0.361 6.361 26 N -0.309 5.309 27 C -0.070 4.070 28 C 0.312 3.688 29 O -0.343 6.343 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.694 -3.317 11.516 12.871 hybrid contribution -0.693 -0.151 -0.300 0.770 sum 4.001 -3.468 11.216 12.403 Atomic orbital electron populations 1.21731 0.94509 1.01946 1.02960 1.22018 0.97006 0.96717 1.02177 1.22223 0.77737 0.97943 1.04810 1.47849 1.07061 1.72242 1.05893 1.19211 0.87741 0.74204 0.82496 1.90712 1.15681 1.51695 1.84129 1.19123 0.96207 1.00708 0.95756 1.20337 1.00339 1.00572 0.98417 1.20679 0.95744 0.99647 0.97223 1.21651 0.94873 0.98384 1.00271 1.17546 0.91899 0.91586 0.89010 1.19542 0.96598 0.98860 1.34047 0.90294 1.25863 1.00136 0.94747 0.93490 1.69758 1.31993 1.08612 1.32428 0.86242 0.80466 0.80850 0.79096 1.18423 1.19957 1.19819 1.21668 0.95721 1.04055 1.00499 1.21606 0.92544 0.92098 0.92744 0.84421 1.22943 0.91157 0.98634 1.07598 1.20603 0.91816 0.81159 0.72714 1.90732 1.34438 1.64556 1.46411 1.46411 1.09271 1.11426 1.63746 1.21870 0.87115 0.95273 1.02743 1.21083 0.83516 0.90064 0.74165 1.90749 1.80791 1.18925 1.43885 0.92704 0.93007 0.90659 0.90732 0.92320 0.90884 0.86359 0.88844 0.88614 0.85660 0.90861 0.86494 0.86082 0.85327 0.91195 0.89536 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.87 37.16 0.37 -1.43 16 2 C -0.14 -1.65 5.29 -26.74 -0.14 -1.79 16 3 C 0.09 1.28 4.82 -4.05 -0.02 1.26 16 4 N -0.60 -8.97 2.49 -167.44 -0.42 -9.39 16 5 C 0.57 10.92 6.45 -12.31 -0.08 10.84 16 6 O -0.54 -11.36 13.88 5.32 0.07 -11.29 16 7 C -0.12 -2.45 5.11 -105.04 -0.54 -2.99 16 8 C -0.18 -3.92 9.69 -38.92 -0.38 -4.30 16 9 C -0.11 -2.55 10.01 -39.73 -0.40 -2.95 16 10 C -0.13 -3.17 8.66 -38.81 -0.34 -3.51 16 11 C 0.10 2.42 5.55 -106.87 -0.59 1.83 16 12 C -0.46 -10.83 9.06 -37.73 -0.34 -11.18 16 13 H 0.08 1.78 7.87 -52.48 -0.41 1.36 16 14 C 0.07 1.70 5.27 -17.35 -0.09 1.61 16 15 N -0.80 -19.07 10.78 55.55 0.60 -18.47 16 16 Si 0.91 17.25 29.57 -169.99 -5.03 12.22 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 20 C -0.20 -4.24 7.13 -38.44 -0.27 -4.51 16 21 C 0.12 1.45 3.56 -68.14 -0.24 1.21 16 22 H 0.14 1.14 7.96 -51.93 -0.41 0.73 16 23 C -0.16 -1.87 6.05 -26.76 -0.16 -2.03 16 24 C 0.55 7.84 7.22 -10.91 -0.08 7.76 16 25 O -0.49 -8.17 17.48 5.60 0.10 -8.08 16 26 N -0.57 -7.96 2.79 -122.58 -0.34 -8.30 16 27 C 0.07 0.83 10.58 59.85 0.63 1.47 16 28 C 0.53 7.80 6.45 -11.08 -0.07 7.73 16 29 O -0.47 -8.26 17.48 5.60 0.10 -8.17 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 33 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 36 H 0.12 1.98 4.96 -51.93 -0.26 1.72 16 37 H 0.09 2.03 8.06 -52.48 -0.42 1.60 16 38 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.13 3.11 6.16 -52.49 -0.32 2.79 16 40 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 41 H 0.12 2.20 3.72 -52.49 -0.20 2.01 16 42 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.13 1.72 6.96 -51.93 -0.36 1.36 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.00 7.83 -51.93 -0.41 0.59 16 46 H 0.08 1.01 7.83 -51.93 -0.41 0.61 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -29.91 377.55 -8.01 -37.92 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.04 Total: 8.85 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.74 Total: -0.98 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.16 Total: -36.16 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: 0.27 Total: -27.53 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.91 -8.01 -37.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283662454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.714 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds