Wall clock time and date at job start Wed Apr 1 2020 03:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52988 * 109.47337 * 2 1 4 4 N 1.46504 * 109.47402 * 186.40297 * 3 2 1 5 5 C 1.34777 * 119.99670 * 98.77812 * 4 3 2 6 6 O 1.21550 * 119.99537 * 186.43660 * 5 4 3 7 7 C 1.47883 * 120.00436 * 6.16836 * 5 4 3 8 8 C 1.39918 * 120.03026 * 134.88881 * 7 5 4 9 9 C 1.38327 * 120.36167 * 179.97438 * 8 7 5 10 10 C 1.37753 * 120.41000 * 0.02562 * 9 8 7 11 11 C 1.40748 * 120.04377 * 0.02562 * 10 9 8 12 12 C 1.41433 * 120.17955 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99856 * 151.30996 * 12 11 10 14 14 C 1.39936 * 120.00154 * 331.30515 * 12 11 10 15 15 N 1.30822 * 119.99994 * 350.17783 * 14 12 11 16 16 Si 1.86804 * 119.99964 * 170.17678 * 14 12 11 17 17 H 1.48493 * 109.46944 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46930 * 120.00263 * 16 14 12 19 19 H 1.48499 * 109.46674 * 239.99987 * 16 14 12 20 20 C 1.39002 * 120.02356 * 314.61563 * 7 5 4 21 21 C 1.46497 * 119.99994 * 278.78655 * 4 3 2 22 22 H 1.08996 * 110.54215 * 359.29091 * 21 4 3 23 23 C 1.54229 * 110.60725 * 122.14431 * 21 4 3 24 24 C 1.51672 * 103.38366 * 118.47735 * 23 21 4 25 25 O 1.21230 * 125.36346 * 180.02562 * 24 23 21 26 26 N 1.33871 * 109.24295 * 0.11995 * 24 23 21 27 27 C 1.46503 * 122.76546 * 179.91363 * 26 24 23 28 28 C 1.33878 * 114.47529 * 359.92223 * 26 24 23 29 29 O 1.21227 * 125.39826 * 179.97438 * 28 26 24 30 30 H 1.08999 * 109.47678 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46914 * 300.00256 * 1 2 3 32 32 H 1.08992 * 109.47015 * 59.99813 * 1 2 3 33 33 H 1.08998 * 109.46914 * 239.99743 * 2 1 3 34 34 H 1.09002 * 109.46963 * 120.00039 * 2 1 3 35 35 H 1.09005 * 109.47664 * 66.40384 * 3 2 1 36 36 H 1.09001 * 109.47332 * 306.40159 * 3 2 1 37 37 H 1.08003 * 119.81628 * 0.02562 * 8 7 5 38 38 H 1.07995 * 119.79574 * 180.02562 * 9 8 7 39 39 H 1.08002 * 119.98182 * 180.02562 * 10 9 8 40 40 H 0.96999 * 120.00384 * 180.02562 * 15 14 12 41 41 H 1.07999 * 120.19899 * 359.97187 * 20 7 5 42 42 H 1.09001 * 110.60652 * 237.03309 * 23 21 4 43 43 H 1.09000 * 110.60512 * 359.97438 * 23 21 4 44 44 H 1.08993 * 109.47703 * 270.00290 * 27 26 24 45 45 H 1.08998 * 109.46599 * 30.00467 * 27 26 24 46 46 H 1.09002 * 109.46853 * 149.99986 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4969 1.4453 -0.1540 5 6 4.0461 1.6675 -1.3646 6 8 5.2467 1.5546 -1.5173 7 6 3.1873 2.0428 -2.5086 8 6 3.5691 3.0873 -3.3577 9 6 2.7714 3.4437 -4.4301 10 6 1.5919 2.7753 -4.6742 11 6 1.1907 1.7227 -3.8304 12 6 -0.0200 1.0348 -4.0781 13 1 -0.1248 0.0019 -3.7806 14 6 -1.0821 1.6926 -4.7086 15 7 -1.0316 2.9863 -4.8957 16 14 -2.5720 0.7232 -5.2830 17 1 -2.3847 -0.7129 -4.9548 18 1 -3.7877 1.2324 -4.5988 19 1 -2.7282 0.8797 -6.7514 20 6 2.0030 1.3545 -2.7444 21 6 4.3568 1.2064 1.0077 22 1 3.7555 1.0581 1.9046 23 6 5.2751 -0.0082 0.7628 24 6 6.6691 0.5845 0.8391 25 8 7.7029 -0.0334 0.7008 26 7 6.5775 1.8972 1.0854 27 6 7.7520 2.7626 1.2196 28 6 5.3243 2.3541 1.1991 29 8 5.0137 3.5047 1.4206 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.7734 1.9222 0.9417 36 1 1.5862 1.9883 -0.8271 37 1 4.4922 3.6175 -3.1753 38 1 3.0751 4.2511 -5.0799 39 1 0.9745 3.0591 -5.5137 40 1 -1.7679 3.4424 -5.3324 41 1 1.7067 0.5445 -2.0945 42 1 5.1326 -0.7597 1.5394 43 1 5.0919 -0.4350 -0.2232 44 1 8.0664 2.7894 2.2628 45 1 8.5633 2.3717 0.6056 46 1 7.5001 3.7706 0.8900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283662454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:43 Heat of formation + Delta-G solvation = -82.501676 kcal Electronic energy + Delta-G solvation = -31280.720945 eV Core-core repulsion = 27135.200919 eV Total energy + Delta-G solvation = -4145.520026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21795 -41.11699 -39.73293 -38.90431 -37.52900 -36.92218 -35.51509 -34.64415 -32.82731 -31.77361 -31.29276 -28.08038 -27.45407 -27.12597 -26.91300 -24.41632 -23.27683 -22.63915 -22.48288 -21.31370 -20.39562 -19.09023 -18.39544 -18.31210 -17.89377 -17.45626 -17.12936 -16.74022 -16.59943 -16.45816 -15.73346 -15.70900 -15.30122 -15.24931 -14.94184 -14.85491 -14.61503 -14.20552 -14.02829 -13.93204 -13.75443 -13.61524 -13.50360 -13.14717 -13.05278 -12.84000 -12.77619 -12.56949 -12.50485 -12.23439 -12.22824 -11.94204 -11.88432 -11.51817 -11.23281 -11.19877 -11.08199 -10.91025 -10.79742 -9.90390 -9.40369 -9.34158 -8.55820 -6.34783 0.30253 0.49577 0.93611 1.26813 1.45109 1.49845 1.58366 1.62358 1.77612 2.03283 2.25269 2.77372 2.97613 3.14946 3.26527 3.64865 3.69246 3.92759 4.10153 4.12949 4.20171 4.32501 4.38197 4.39567 4.43259 4.49531 4.58332 4.61033 4.63696 4.72406 4.86356 5.00614 5.04352 5.08321 5.17882 5.21584 5.33614 5.37721 5.46721 5.56430 5.62191 5.69407 5.79392 5.98500 6.06471 6.11267 6.18825 6.24212 6.64587 6.64982 6.93864 6.96358 6.99030 8.39866 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.003386 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.094095 B = 8268.282472 C = 9026.555045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.092 3.908 4 N -0.585 5.585 5 C 0.569 3.431 6 O -0.568 6.568 7 C -0.121 4.121 8 C -0.195 4.195 9 C -0.116 4.116 10 C -0.160 4.160 11 C 0.077 3.923 12 C -0.481 4.481 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.832 5.832 16 Si 0.977 3.023 17 H -0.254 1.254 18 H -0.268 1.268 19 H -0.273 1.273 20 C -0.187 4.187 21 C 0.119 3.881 22 H 0.192 0.808 23 C -0.152 4.152 24 C 0.542 3.458 25 O -0.519 6.519 26 N -0.571 5.571 27 C 0.064 3.936 28 C 0.520 3.480 29 O -0.506 6.506 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.286 0.714 41 H 0.140 0.860 42 H 0.174 0.826 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -5.776 14.166 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C -0.029 4.029 4 N -0.317 5.317 5 C 0.360 3.640 6 O -0.448 6.448 7 C -0.124 4.124 8 C -0.215 4.215 9 C -0.134 4.134 10 C -0.179 4.179 11 C 0.075 3.925 12 C -0.511 4.511 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.459 5.459 16 Si 0.799 3.201 17 H -0.177 1.177 18 H -0.193 1.193 19 H -0.198 1.198 20 C -0.207 4.207 21 C 0.012 3.988 22 H 0.209 0.791 23 C -0.192 4.192 24 C 0.333 3.667 25 O -0.393 6.393 26 N -0.313 5.313 27 C -0.076 4.076 28 C 0.308 3.692 29 O -0.378 6.378 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.158 0.842 42 H 0.191 0.809 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.639 -5.310 14.064 15.467 hybrid contribution -0.294 0.529 -1.022 1.188 sum 3.345 -4.781 13.041 14.287 Atomic orbital electron populations 1.21701 0.94508 1.02509 1.02202 1.21960 0.96825 0.95201 1.03116 1.22324 0.76436 0.99299 1.04884 1.47756 1.08040 1.70553 1.05382 1.18856 0.87033 0.74649 0.83420 1.90702 1.16290 1.53021 1.84781 1.19445 0.96418 0.99993 0.96553 1.20487 1.00544 1.01474 0.99031 1.20840 0.95253 0.99808 0.97514 1.21593 0.95689 0.99939 1.00718 1.17897 0.92786 0.92012 0.89842 1.19778 0.97025 0.99197 1.35064 0.89777 1.26653 1.02663 0.95435 0.93019 1.69834 1.33096 1.10050 1.32891 0.85206 0.76940 0.79616 0.78320 1.17709 1.19302 1.19823 1.21892 0.95045 1.04019 0.99709 1.22048 0.92532 0.91080 0.93154 0.79070 1.23026 0.88555 0.99036 1.08556 1.21139 0.92678 0.81082 0.71756 1.90718 1.35764 1.65087 1.47758 1.46586 1.09748 1.11808 1.63171 1.22019 0.86575 0.94603 1.04438 1.21555 0.84140 0.90226 0.73291 1.90735 1.81282 1.20370 1.45458 0.91484 0.91111 0.94093 0.92708 0.88284 0.87731 0.90053 0.88835 0.87031 0.87230 0.90352 0.84228 0.80860 0.86862 0.88553 0.89815 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.87 71.98 0.71 -2.41 16 2 C -0.13 -2.64 5.29 30.59 0.16 -2.47 16 3 C 0.09 2.23 4.82 86.37 0.42 2.65 16 4 N -0.59 -16.17 2.49 -801.94 -2.00 -18.17 16 5 C 0.57 21.43 6.45 86.80 0.56 21.99 16 6 O -0.57 -23.60 13.88 -3.87 -0.05 -23.66 16 7 C -0.12 -5.23 5.11 -20.13 -0.10 -5.34 16 8 C -0.20 -8.95 9.69 22.70 0.22 -8.73 16 9 C -0.12 -5.37 10.01 22.18 0.22 -5.15 16 10 C -0.16 -8.00 8.66 22.77 0.20 -7.80 16 11 C 0.08 3.76 5.55 -21.32 -0.12 3.64 16 12 C -0.48 -23.04 9.06 23.47 0.21 -22.82 16 13 H 0.08 3.80 7.87 -2.91 -0.02 3.78 16 14 C 0.04 1.67 5.27 85.25 0.45 2.12 16 15 N -0.83 -40.59 10.78 21.82 0.24 -40.35 16 16 Si 0.98 35.17 29.57 68.60 2.03 37.20 16 17 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 18 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 20 C -0.19 -8.06 7.13 23.01 0.16 -7.90 16 21 C 0.12 2.45 3.56 44.86 0.16 2.61 16 22 H 0.19 1.92 7.96 -2.39 -0.02 1.91 16 23 C -0.15 -2.93 6.05 30.57 0.19 -2.74 16 24 C 0.54 14.49 7.22 88.11 0.64 15.13 16 25 O -0.52 -16.76 17.48 -2.88 -0.05 -16.81 16 26 N -0.57 -15.25 2.79 -779.57 -2.18 -17.43 16 27 C 0.06 1.47 10.58 127.77 1.35 2.82 16 28 C 0.52 14.39 6.45 87.99 0.57 14.96 16 29 O -0.51 -17.06 17.48 -2.86 -0.05 -17.11 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 33 H 0.05 1.33 6.34 -2.39 -0.02 1.31 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.94 8.12 -2.38 -0.02 1.92 16 36 H 0.08 2.66 4.96 -2.39 -0.01 2.65 16 37 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 38 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 40 H 0.29 12.74 8.30 -92.71 -0.77 11.97 16 41 H 0.14 5.23 3.72 -2.91 -0.01 5.22 16 42 H 0.17 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.11 2.71 6.96 -2.39 -0.02 2.69 16 44 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.94 7.83 -2.39 -0.02 1.92 16 46 H 0.08 1.87 7.83 -2.39 -0.02 1.85 16 Total: -1.00 -68.87 377.55 4.95 -63.92 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 1.02 Total: 31.84 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.99 Total: 0.57 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -3.94 Total: -75.95 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -0.15 Total: -57.58 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -68.87 4.95 -63.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283662454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.580 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds