Wall clock time and date at job start Wed Apr 1 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 119.99979 * 2 1 4 4 N 1.46508 * 109.47135 * 125.00069 * 3 2 1 5 5 C 1.46492 * 120.00045 * 269.99958 * 4 3 2 6 6 C 1.50702 * 109.47340 * 270.00019 * 5 4 3 7 7 H 1.07998 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99771 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99231 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46906 * 89.99936 * 10 8 6 12 12 H 1.48501 * 109.47385 * 209.99896 * 10 8 6 13 13 H 1.48499 * 109.47198 * 330.00092 * 10 8 6 14 14 C 1.34774 * 119.99956 * 89.99909 * 4 3 2 15 15 O 1.21283 * 120.00245 * 180.02562 * 14 4 3 16 16 C 1.50701 * 120.00133 * 0.02562 * 14 4 3 17 17 C 1.52995 * 109.47386 * 179.97438 * 16 14 4 18 18 N 1.46501 * 109.47160 * 179.97438 * 17 16 14 19 19 C 1.40213 * 120.50779 * 90.00351 * 18 17 16 20 20 C 1.38504 * 120.73902 * 15.16630 * 19 18 17 21 21 C 1.38295 * 119.81298 * 179.79112 * 20 19 18 22 22 C 1.38275 * 120.19696 * 0.51256 * 21 20 19 23 23 C 1.38314 * 120.25902 * 359.73368 * 22 21 20 24 24 C 1.38391 * 119.87762 * 359.97438 * 23 22 21 25 25 O 1.35980 * 120.66882 * 180.02562 * 24 23 22 26 26 C 1.43006 * 116.70825 * 147.16173 * 25 24 23 27 27 C 1.35094 * 120.50963 * 269.97940 * 18 17 16 28 28 O 1.21296 * 120.13036 * 1.71750 * 27 18 17 29 29 H 1.08001 * 119.99857 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00109 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00289 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47403 * 5.00194 * 3 2 1 33 33 H 1.09001 * 109.47048 * 244.99902 * 3 2 1 34 34 H 1.09009 * 109.47009 * 30.00146 * 5 4 3 35 35 H 1.09002 * 109.47163 * 150.00080 * 5 4 3 36 36 H 0.97006 * 119.99411 * 179.97438 * 9 8 6 37 37 H 1.09009 * 109.46910 * 60.00044 * 16 14 4 38 38 H 1.08994 * 109.47379 * 300.00133 * 16 14 4 39 39 H 1.09001 * 109.46999 * 60.00021 * 17 16 14 40 40 H 1.09003 * 109.47169 * 300.00290 * 17 16 14 41 41 H 1.08005 * 120.09542 * 0.27041 * 20 19 18 42 42 H 1.08000 * 119.89863 * 180.28074 * 21 20 19 43 43 H 1.08001 * 119.86967 * 179.76062 * 22 21 20 44 44 H 1.08007 * 120.06330 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.43923 * 166.45193 * 26 25 24 46 46 H 1.08993 * 109.44303 * 286.38599 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5184 4.0667 3.6083 9 7 2.7679 5.3570 3.6569 10 14 1.7225 3.2136 5.0671 11 1 2.7778 2.7225 5.9894 12 1 0.8460 4.1740 5.7845 13 1 0.9113 2.0661 4.5874 14 6 4.2497 0.8662 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6972 0.3184 -0.3482 17 6 6.1537 -0.1393 -0.2476 18 7 6.5885 -0.6724 -1.5411 19 6 7.1689 0.1705 -2.4995 20 6 7.6281 1.4296 -2.1499 21 6 8.2013 2.2434 -3.1099 22 6 8.3071 1.8078 -4.4179 23 6 7.8457 0.5536 -4.7743 24 6 7.2764 -0.2690 -3.8180 25 8 6.8180 -1.5052 -4.1505 26 6 6.9256 -2.5212 -3.1499 27 6 6.4369 -1.9837 -1.8284 28 8 5.9095 -2.7256 -1.0268 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 1.4887 1.6966 2.5459 35 1 3.0990 1.3603 3.2259 36 1 2.5383 5.8658 4.4503 37 1 4.6126 1.0954 -1.1081 38 1 4.0681 -0.5283 -0.6228 39 1 6.2387 -0.9161 0.5123 40 1 6.7825 0.7077 0.0267 41 1 7.5459 1.7718 -1.1288 42 1 8.5640 3.2237 -2.8378 43 1 8.7522 2.4493 -5.1642 44 1 7.9296 0.2166 -5.7971 45 1 6.3196 -3.3801 -3.4383 46 1 7.9672 -2.8276 -3.0544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292431606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:44 Heat of formation + Delta-G solvation = -39.292830 kcal Electronic energy + Delta-G solvation = -30178.782367 eV Core-core repulsion = 26035.136017 eV Total energy + Delta-G solvation = -4143.646350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80884 -39.42836 -39.02760 -37.88058 -36.15877 -35.73073 -33.26764 -32.20005 -31.80640 -30.92710 -30.05833 -28.70037 -27.58584 -25.65594 -24.76040 -23.62880 -22.58585 -21.60673 -20.04942 -19.70865 -19.38420 -18.48227 -17.55602 -17.23247 -16.93855 -16.61253 -15.86988 -15.70258 -15.54988 -15.29880 -15.09971 -14.70896 -14.57678 -14.40649 -14.29677 -13.96903 -13.67991 -13.32389 -13.21718 -12.82451 -12.61086 -12.41366 -12.28946 -12.18076 -11.76495 -11.64919 -11.60421 -11.47313 -11.26348 -10.98748 -10.95943 -10.66436 -10.52570 -10.17840 -10.16177 -9.59004 -9.28421 -9.13406 -8.94824 -8.60678 -8.10843 -7.80242 -6.11018 -4.09779 0.79629 0.98448 2.05086 2.23589 2.36148 2.96540 3.24967 3.28449 3.34490 3.36890 3.42178 3.67776 3.86486 4.36247 4.38273 4.56370 4.66624 4.75670 4.87054 4.93866 4.95526 4.98494 5.03082 5.16556 5.20273 5.23324 5.30783 5.42257 5.44280 5.62204 5.69837 5.71430 5.91589 5.93939 5.95060 6.11347 6.14125 6.21380 6.33916 6.64753 6.67437 6.71589 6.83382 6.92632 7.06069 7.30097 7.48299 7.58684 8.16648 8.43788 8.85510 8.92873 9.49449 11.02213 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.003042 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.435278 B = 9202.201003 C =10118.753706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.136 3.864 4 N -0.586 5.586 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.515 3.485 15 O -0.540 6.540 16 C -0.155 4.155 17 C 0.124 3.876 18 N -0.549 5.549 19 C 0.100 3.900 20 C -0.122 4.122 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.109 4.109 24 C 0.072 3.928 25 O -0.304 6.304 26 C 0.053 3.947 27 C 0.484 3.516 28 O -0.504 6.504 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 -11.968 -19.412 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.012 3.988 4 N -0.317 5.317 5 C 0.096 3.904 6 C -0.567 4.567 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.301 3.699 15 O -0.418 6.418 16 C -0.196 4.196 17 C 0.003 3.997 18 N -0.273 5.273 19 C 0.005 3.995 20 C -0.143 4.143 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.128 4.128 24 C 0.026 3.974 25 O -0.218 6.218 26 C -0.025 4.025 27 C 0.272 3.728 28 O -0.378 6.378 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.321 -12.314 -18.432 23.677 hybrid contribution -0.546 -0.259 1.031 1.196 sum 7.774 -12.573 -17.401 22.832 Atomic orbital electron populations 1.23839 0.95806 1.01857 1.00458 1.23443 0.96464 0.99055 0.99991 1.20621 0.93127 0.95421 0.89604 1.47879 1.10637 1.60075 1.13062 1.19673 0.94970 0.95171 0.80547 1.21311 1.41253 0.91070 1.03100 0.90729 1.24838 0.95240 0.94716 0.98109 1.69896 1.47751 1.06588 1.29302 0.86871 0.79927 0.79704 0.83353 1.19876 1.21034 1.19029 1.20045 0.82314 0.78343 0.89179 1.90682 1.52499 1.56617 1.42021 1.21992 0.97313 1.02518 0.97745 1.21485 0.94615 1.01228 0.82384 1.45836 1.57621 1.07468 1.16416 1.18159 1.00324 0.92979 0.88033 1.20888 0.99803 0.92360 1.01204 1.21069 0.98875 0.99913 0.92639 1.21010 1.00372 0.95295 0.96612 1.20511 0.98752 0.94382 0.99172 1.18611 1.00691 0.86692 0.91394 1.86224 1.79316 1.16736 1.39525 1.23206 1.04276 0.90999 0.84065 1.21571 0.79513 0.81896 0.89786 1.90801 1.40888 1.56403 1.49731 0.88171 0.88690 0.87727 0.89106 0.90521 0.95174 0.94526 0.92549 0.88902 0.88972 0.88018 0.88358 0.84333 0.84867 0.84924 0.84502 0.83814 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 14.32 29.02 0.42 -1.91 16 2 C -0.17 -2.43 9.74 -36.02 -0.35 -2.78 16 3 C 0.14 2.20 5.65 -5.19 -0.03 2.17 16 4 N -0.59 -12.06 2.44 -176.43 -0.43 -12.50 16 5 C 0.22 5.33 4.23 -5.20 -0.02 5.31 16 6 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 7 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 10 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.52 10.36 7.67 -10.99 -0.08 10.28 16 15 O -0.54 -12.92 15.56 5.56 0.09 -12.83 16 16 C -0.15 -2.34 4.58 -27.88 -0.13 -2.47 16 17 C 0.12 1.78 4.49 -4.04 -0.02 1.76 16 18 N -0.55 -6.92 2.72 -113.19 -0.31 -7.22 16 19 C 0.10 1.13 6.39 -83.49 -0.53 0.59 16 20 C -0.12 -1.28 9.36 -39.46 -0.37 -1.65 16 21 C -0.11 -0.91 10.04 -39.55 -0.40 -1.31 16 22 C -0.11 -0.85 10.04 -39.54 -0.40 -1.25 16 23 C -0.11 -0.90 10.00 -39.50 -0.39 -1.30 16 24 C 0.07 0.74 6.44 -39.09 -0.25 0.49 16 25 O -0.30 -3.02 10.45 -19.68 -0.21 -3.23 16 26 C 0.05 0.45 7.17 36.05 0.26 0.71 16 27 C 0.48 6.04 7.67 -10.79 -0.08 5.96 16 28 O -0.50 -7.83 16.77 5.54 0.09 -7.73 16 29 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 30 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.10 1.46 7.83 -52.49 -0.41 1.05 16 32 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 33 H 0.08 1.06 6.44 -51.93 -0.33 0.73 16 34 H 0.03 0.72 7.13 -51.92 -0.37 0.35 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.09 1.28 7.40 -51.92 -0.38 0.90 16 38 H 0.09 1.34 7.78 -51.93 -0.40 0.94 16 39 H 0.10 1.62 7.45 -51.93 -0.39 1.24 16 40 H 0.10 1.37 5.92 -51.93 -0.31 1.07 16 41 H 0.14 1.48 6.12 -52.48 -0.32 1.16 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 45 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -35.49 386.67 -7.87 -43.36 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.21 Total: 2.80 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.82 Total: 1.22 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.04 Total: -46.40 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.03 Total: -23.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.49 -7.87 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292431606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.067 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds