Wall clock time and date at job start Wed Apr 1 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 119.99979 * 2 1 4 4 N 1.46508 * 109.47135 * 125.00069 * 3 2 1 5 5 C 1.46492 * 120.00045 * 269.99958 * 4 3 2 6 6 C 1.50702 * 109.47340 * 270.00019 * 5 4 3 7 7 H 1.07998 * 120.00019 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99771 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99231 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00329 * 359.97438 * 8 6 5 11 11 H 1.48507 * 109.46906 * 89.99936 * 10 8 6 12 12 H 1.48501 * 109.47385 * 209.99896 * 10 8 6 13 13 H 1.48499 * 109.47198 * 330.00092 * 10 8 6 14 14 C 1.34774 * 119.99956 * 89.99909 * 4 3 2 15 15 O 1.21283 * 120.00245 * 180.02562 * 14 4 3 16 16 C 1.50701 * 120.00133 * 0.02562 * 14 4 3 17 17 C 1.52995 * 109.47386 * 179.97438 * 16 14 4 18 18 N 1.46501 * 109.47160 * 179.97438 * 17 16 14 19 19 C 1.40213 * 120.50779 * 90.00351 * 18 17 16 20 20 C 1.38504 * 120.73902 * 15.16630 * 19 18 17 21 21 C 1.38295 * 119.81298 * 179.79112 * 20 19 18 22 22 C 1.38275 * 120.19696 * 0.51256 * 21 20 19 23 23 C 1.38314 * 120.25902 * 359.73368 * 22 21 20 24 24 C 1.38391 * 119.87762 * 359.97438 * 23 22 21 25 25 O 1.35980 * 120.66882 * 180.02562 * 24 23 22 26 26 C 1.43006 * 116.70825 * 147.16173 * 25 24 23 27 27 C 1.35094 * 120.50963 * 269.97940 * 18 17 16 28 28 O 1.21296 * 120.13036 * 1.71750 * 27 18 17 29 29 H 1.08001 * 119.99857 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00109 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00289 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.47403 * 5.00194 * 3 2 1 33 33 H 1.09001 * 109.47048 * 244.99902 * 3 2 1 34 34 H 1.09009 * 109.47009 * 30.00146 * 5 4 3 35 35 H 1.09002 * 109.47163 * 150.00080 * 5 4 3 36 36 H 0.97006 * 119.99411 * 179.97438 * 9 8 6 37 37 H 1.09009 * 109.46910 * 60.00044 * 16 14 4 38 38 H 1.08994 * 109.47379 * 300.00133 * 16 14 4 39 39 H 1.09001 * 109.46999 * 60.00021 * 17 16 14 40 40 H 1.09003 * 109.47169 * 300.00290 * 17 16 14 41 41 H 1.08005 * 120.09542 * 0.27041 * 20 19 18 42 42 H 1.08000 * 119.89863 * 180.28074 * 21 20 19 43 43 H 1.08001 * 119.86967 * 179.76062 * 22 21 20 44 44 H 1.08007 * 120.06330 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.43923 * 166.45193 * 26 25 24 46 46 H 1.08993 * 109.44303 * 286.38599 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3033 3.8371 1.6365 8 6 2.5184 4.0667 3.6083 9 7 2.7679 5.3570 3.6569 10 14 1.7225 3.2136 5.0671 11 1 2.7778 2.7225 5.9894 12 1 0.8460 4.1740 5.7845 13 1 0.9113 2.0661 4.5874 14 6 4.2497 0.8662 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6972 0.3184 -0.3482 17 6 6.1537 -0.1393 -0.2476 18 7 6.5885 -0.6724 -1.5411 19 6 7.1689 0.1705 -2.4995 20 6 7.6281 1.4296 -2.1499 21 6 8.2013 2.2434 -3.1099 22 6 8.3071 1.8078 -4.4179 23 6 7.8457 0.5536 -4.7743 24 6 7.2764 -0.2690 -3.8180 25 8 6.8180 -1.5052 -4.1505 26 6 6.9256 -2.5212 -3.1499 27 6 6.4369 -1.9837 -1.8284 28 8 5.9095 -2.7256 -1.0268 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 1.4887 1.6966 2.5459 35 1 3.0990 1.3603 3.2259 36 1 2.5383 5.8658 4.4503 37 1 4.6126 1.0954 -1.1081 38 1 4.0681 -0.5283 -0.6228 39 1 6.2387 -0.9161 0.5123 40 1 6.7825 0.7077 0.0267 41 1 7.5459 1.7718 -1.1288 42 1 8.5640 3.2237 -2.8378 43 1 8.7522 2.4493 -5.1642 44 1 7.9296 0.2166 -5.7971 45 1 6.3196 -3.3801 -3.4383 46 1 7.9672 -2.8276 -3.0544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292431606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:43 Heat of formation + Delta-G solvation = -61.936416 kcal Electronic energy + Delta-G solvation = -30179.764266 eV Core-core repulsion = 26035.136017 eV Total energy + Delta-G solvation = -4144.628250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.65593 -40.94459 -39.98453 -38.64440 -37.44471 -36.95259 -35.12872 -33.82214 -33.10521 -31.63827 -30.82626 -30.37674 -28.66665 -27.01326 -26.01622 -24.53473 -23.98870 -22.81668 -21.24031 -20.54068 -20.21101 -19.97985 -19.12045 -18.60398 -18.05513 -17.76746 -17.38125 -16.81641 -16.65164 -16.37192 -16.09470 -15.98831 -15.76351 -15.56069 -15.25449 -15.07798 -14.92768 -14.62990 -14.27294 -14.19553 -13.99054 -13.90209 -13.63875 -13.31277 -13.10698 -12.98892 -12.95057 -12.56234 -12.43833 -12.29268 -12.21644 -12.11916 -11.99425 -11.76282 -11.57814 -11.10066 -10.85395 -10.80420 -10.40069 -9.67463 -9.53715 -8.92826 -8.36156 -6.40920 0.04264 0.28460 1.16254 1.23139 1.31235 1.32848 1.34163 1.42616 1.64723 2.24600 2.28494 2.34546 2.72985 2.88584 2.98063 3.51138 3.61538 3.71874 3.72740 3.97487 3.99851 4.01685 4.11549 4.16066 4.21082 4.30352 4.37738 4.39132 4.51137 4.56528 4.68014 4.70868 4.75312 4.79579 4.88162 4.98134 5.00629 5.25991 5.29126 5.41349 5.46019 5.54549 5.65635 5.67553 5.83472 5.84002 6.20252 6.27735 6.54709 6.55060 6.60091 7.16064 7.29475 8.80435 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.003042 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.435278 B = 9202.201003 C =10118.753706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.133 3.867 4 N -0.593 5.593 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.033 0.967 8 C 0.016 3.984 9 N -0.941 5.941 10 Si 0.942 3.058 11 H -0.276 1.276 12 H -0.273 1.273 13 H -0.242 1.242 14 C 0.508 3.492 15 O -0.587 6.587 16 C -0.133 4.133 17 C 0.131 3.869 18 N -0.550 5.550 19 C 0.076 3.924 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.102 4.102 23 C -0.106 4.106 24 C 0.064 3.936 25 O -0.306 6.306 26 C 0.059 3.941 27 C 0.477 3.523 28 O -0.544 6.544 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.018 0.982 36 H 0.269 0.731 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.790 -13.270 -21.736 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C 0.011 3.989 4 N -0.323 5.323 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.052 0.948 8 C -0.182 4.182 9 N -0.581 5.581 10 Si 0.765 3.235 11 H -0.202 1.202 12 H -0.198 1.198 13 H -0.166 1.166 14 C 0.296 3.704 15 O -0.468 6.468 16 C -0.174 4.174 17 C 0.009 3.991 18 N -0.274 5.274 19 C -0.018 4.018 20 C -0.158 4.158 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.125 4.125 24 C 0.018 3.982 25 O -0.221 6.221 26 C -0.018 4.018 27 C 0.267 3.733 28 O -0.421 6.421 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.183 0.817 44 H 0.180 0.820 45 H 0.186 0.814 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.752 -13.615 -20.833 26.066 hybrid contribution -0.309 0.254 1.631 1.679 sum 7.443 -13.360 -19.201 24.548 Atomic orbital electron populations 1.24087 0.95265 1.03164 0.97528 1.23264 0.96937 0.97902 1.02604 1.20831 0.92700 0.96555 0.88788 1.47965 1.11719 1.59583 1.12997 1.19309 0.95383 0.92410 0.82382 1.21507 1.40724 0.93153 1.01979 0.94841 1.25762 0.95868 0.95335 1.01285 1.70034 1.49227 1.08330 1.30524 0.85796 0.79155 0.79381 0.79149 1.20186 1.19767 1.16571 1.20856 0.81659 0.77495 0.90396 1.90647 1.53712 1.58485 1.43955 1.21836 0.97802 1.02929 0.94844 1.21195 0.94186 1.00406 0.83344 1.45797 1.57708 1.08013 1.15882 1.18333 1.01836 0.93253 0.88346 1.20948 1.00851 0.92761 1.01259 1.21340 0.98335 1.00325 0.92932 1.21408 0.98816 0.95218 0.96582 1.20884 0.97580 0.94175 0.99864 1.18857 1.01063 0.87147 0.91163 1.86217 1.79487 1.16800 1.39586 1.23396 1.06015 0.90866 0.81511 1.22382 0.78687 0.81372 0.90824 1.90776 1.42882 1.57179 1.51294 0.87771 0.86422 0.87403 0.89892 0.88405 0.93637 0.96412 0.92198 0.87294 0.87870 0.90198 0.88723 0.85696 0.83317 0.81680 0.82034 0.81442 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 14.32 67.79 0.97 -2.76 16 2 C -0.19 -5.05 9.74 25.65 0.25 -4.80 16 3 C 0.13 4.24 5.65 85.63 0.48 4.72 16 4 N -0.59 -24.83 2.44 -830.48 -2.03 -26.86 16 5 C 0.23 11.32 4.23 85.64 0.36 11.69 16 6 C -0.54 -31.54 9.94 25.60 0.25 -31.28 16 7 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 8 C 0.02 0.95 5.47 84.66 0.46 1.41 16 9 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 10 Si 0.94 44.88 27.47 68.60 1.88 46.76 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 14 C 0.51 21.15 7.67 87.66 0.67 21.82 16 15 O -0.59 -29.56 15.56 -3.04 -0.05 -29.61 16 16 C -0.13 -4.12 4.58 29.85 0.14 -3.98 16 17 C 0.13 3.96 4.49 86.38 0.39 4.34 16 18 N -0.55 -14.03 2.72 -630.24 -1.71 -15.74 16 19 C 0.08 1.68 6.39 38.14 0.24 1.92 16 20 C -0.14 -2.89 9.36 22.35 0.21 -2.68 16 21 C -0.11 -1.72 10.04 22.29 0.22 -1.49 16 22 C -0.10 -1.20 10.04 22.30 0.22 -0.97 16 23 C -0.11 -1.43 10.00 22.32 0.22 -1.20 16 24 C 0.06 1.19 6.44 22.58 0.15 1.33 16 25 O -0.31 -5.39 10.45 -93.33 -0.98 -6.37 16 26 C 0.06 0.91 7.17 71.27 0.51 1.42 16 27 C 0.48 11.79 7.67 87.64 0.67 12.46 16 28 O -0.54 -17.17 16.77 -3.08 -0.05 -17.22 16 29 H 0.10 2.31 7.84 -2.91 -0.02 2.29 16 30 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.11 2.85 7.83 -2.91 -0.02 2.83 16 32 H 0.08 2.75 7.72 -2.39 -0.02 2.73 16 33 H 0.10 2.63 6.44 -2.39 -0.02 2.62 16 34 H 0.05 2.12 7.13 -2.38 -0.02 2.11 16 35 H 0.02 0.96 6.85 -2.39 -0.02 0.94 16 36 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 37 H 0.11 3.01 7.40 -2.38 -0.02 2.99 16 38 H 0.10 2.99 7.78 -2.39 -0.02 2.97 16 39 H 0.08 2.75 7.45 -2.39 -0.02 2.73 16 40 H 0.09 2.88 5.92 -2.39 -0.01 2.86 16 41 H 0.13 2.87 6.12 -2.91 -0.02 2.85 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 44 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -80.73 386.67 4.74 -75.99 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.94 Total: 19.99 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.43 Total: 11.94 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.44 Total: -101.49 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.07 Total: -53.19 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -80.73 4.74 -75.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292431606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.052 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds