Wall clock time and date at job start Wed Apr 1 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31292 * 118.86093 * 2 1 4 4 C 1.34086 * 120.87420 * 179.80085 * 3 2 1 5 5 S 1.75396 * 131.29834 * 180.20465 * 4 3 2 6 6 C 1.76325 * 92.45723 * 180.33538 * 5 4 3 7 7 C 1.32529 * 111.36012 * 359.95692 * 6 5 4 8 8 C 1.39096 * 119.10201 * 0.50993 * 4 3 2 9 9 C 1.41838 * 117.87653 * 359.70238 * 8 4 3 10 10 N 1.38329 * 120.63693 * 180.08707 * 9 8 4 11 11 C 1.46892 * 111.00042 * 239.77537 * 10 9 8 12 12 C 1.53244 * 109.33759 * 172.74966 * 11 10 9 13 13 N 1.47079 * 108.52178 * 53.82544 * 12 11 10 14 14 C 1.36947 * 120.87696 * 128.83753 * 13 12 11 15 15 H 1.07997 * 119.99424 * 209.18824 * 14 13 12 16 16 C 1.38803 * 119.99982 * 29.19013 * 14 13 12 17 17 N 1.31620 * 120.00279 * 13.16675 * 16 14 13 18 18 Si 1.86804 * 119.99888 * 193.17100 * 16 14 13 19 19 H 1.48499 * 109.46910 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47002 * 119.99717 * 18 16 14 21 21 H 1.48496 * 109.47094 * 239.99720 * 18 16 14 22 22 C 1.47072 * 118.24041 * 308.81574 * 13 12 11 23 23 C 1.46900 * 110.99686 * 115.46931 * 10 9 8 24 24 N 1.32081 * 118.85886 * 180.28802 * 2 1 3 25 25 C 1.52881 * 110.19769 * 180.02562 * 7 6 5 26 26 C 1.54131 * 104.89731 * 342.40975 * 25 7 6 27 27 C 1.52604 * 138.11812 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.46774 * 269.71721 * 1 2 3 29 29 H 1.08994 * 109.47229 * 29.71247 * 1 2 3 30 30 H 1.09000 * 109.47520 * 149.71905 * 1 2 3 31 31 H 1.09003 * 109.49277 * 292.70334 * 11 10 9 32 32 H 1.09000 * 109.49736 * 52.78654 * 11 10 9 33 33 H 1.09004 * 109.62795 * 294.11822 * 12 11 10 34 34 H 1.08996 * 109.62822 * 173.54093 * 12 11 10 35 35 H 0.97004 * 119.99870 * 180.02562 * 17 16 14 36 36 H 1.08993 * 109.63262 * 291.47369 * 22 13 12 37 37 H 1.09006 * 109.63071 * 170.88998 * 22 13 12 38 38 H 1.08998 * 109.49434 * 307.22241 * 23 10 9 39 39 H 1.09010 * 109.49069 * 67.29702 * 23 10 9 40 40 H 1.08999 * 110.35151 * 101.26709 * 25 7 6 41 41 H 1.08995 * 110.35318 * 223.55387 * 25 7 6 42 42 H 1.08994 * 111.01212 * 268.51209 * 26 25 7 43 43 H 1.09001 * 111.03843 * 144.65896 * 26 25 7 44 44 H 1.08999 * 110.36983 * 316.39383 * 27 6 5 45 45 H 1.09001 * 110.36904 * 78.59945 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1408 1.1498 0.0000 4 6 3.4808 1.1970 0.0040 5 16 4.5913 2.5545 0.0098 6 6 6.0027 1.4977 0.0016 7 6 5.6493 0.2204 -0.0040 8 6 4.1996 0.0061 -0.0026 9 6 3.4689 -1.2095 -0.0069 10 7 4.1259 -2.4268 -0.0117 11 6 3.7680 -3.2135 -1.1995 12 6 4.6470 -4.4673 -1.2615 13 7 4.5299 -5.1838 0.0176 14 6 4.2335 -6.5204 0.0498 15 1 3.7015 -6.9352 0.8932 16 6 4.6167 -7.3418 -1.0013 17 7 5.4785 -6.9070 -1.8961 18 14 3.9091 -9.0646 -1.1463 19 1 2.9697 -9.3100 -0.0227 20 1 3.1843 -9.1952 -2.4358 21 1 5.0114 -10.0583 -1.0952 22 6 4.7401 -4.4269 1.2609 23 6 3.8574 -3.1748 1.2238 24 7 2.1445 -1.1568 -0.0058 25 6 6.8914 -0.6710 -0.0104 26 6 8.0404 0.2538 -0.4579 27 6 7.5228 1.6321 -0.0005 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 0.8925 -0.5093 30 1 -0.3634 -0.8874 -0.5182 31 1 2.7199 -3.5068 -1.1392 32 1 3.9271 -2.6130 -2.0951 33 1 5.6852 -4.1788 -1.4259 34 1 4.3099 -5.1109 -2.0740 35 1 5.7460 -7.4810 -2.6309 36 1 5.7872 -4.1346 1.3391 37 1 4.4645 -5.0439 2.1163 38 1 4.0814 -2.5461 2.0855 39 1 2.8080 -3.4686 1.2503 40 1 7.0846 -1.0591 0.9896 41 1 6.7664 -1.4902 -0.7183 42 1 8.1679 0.2231 -1.5399 43 1 8.9698 -0.0028 0.0505 44 1 7.8342 2.4063 -0.7018 45 1 7.8848 1.8615 1.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299562892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:18 Heat of formation + Delta-G solvation = 111.320949 kcal Electronic energy + Delta-G solvation = -28303.620509 eV Core-core repulsion = 24641.550885 eV Total energy + Delta-G solvation = -3662.069624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.137 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.26517 -38.71438 -38.20785 -34.93423 -34.09636 -32.50713 -31.01467 -30.29869 -29.99233 -28.37460 -27.13443 -26.40355 -24.41363 -23.03815 -22.70422 -22.09690 -20.94523 -19.47835 -19.25059 -17.96466 -17.66745 -16.52124 -16.20832 -15.83287 -15.40884 -15.23011 -14.72055 -14.29033 -14.06690 -13.72403 -13.48687 -13.20862 -13.11345 -13.01826 -12.93153 -12.75359 -12.49576 -12.36699 -12.16254 -11.74223 -11.61491 -11.20950 -11.15897 -11.12690 -11.04318 -10.94022 -10.82311 -10.61300 -10.45037 -10.32516 -10.06099 -9.86201 -9.81055 -9.26333 -8.79314 -8.60217 -8.29578 -7.98214 -6.70323 -5.82704 -3.27627 0.41800 0.87042 0.94808 1.78219 2.10203 3.35113 3.43199 3.45060 3.59773 3.68169 3.94791 4.23714 4.36242 4.45333 4.50946 4.75280 4.93085 4.96614 5.13884 5.31863 5.36483 5.44494 5.44807 5.50895 5.55023 5.61207 5.66880 5.78294 5.84558 5.87993 5.91488 6.02137 6.05858 6.08500 6.17129 6.23476 6.27464 6.38703 6.41573 6.53543 6.80116 6.88225 7.07570 7.43231 7.49662 7.59247 7.76395 8.05811 8.39790 9.16568 9.78140 10.36976 11.26334 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.003602 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.995279 B = 7771.939924 C = 9318.228650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.341 3.659 3 N -0.502 5.502 4 C 0.094 3.906 5 S 0.168 5.832 6 C -0.216 4.216 7 C -0.053 4.053 8 C -0.149 4.149 9 C 0.418 3.582 10 N -0.481 5.481 11 C 0.042 3.958 12 C 0.182 3.818 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.152 3.848 23 C 0.052 3.948 24 N -0.549 5.549 25 C -0.056 4.056 26 C -0.119 4.119 27 C -0.038 4.038 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 18.607 3.592 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 N -0.220 5.220 4 C -0.157 4.157 5 S 0.428 5.572 6 C -0.331 4.331 7 C -0.064 4.064 8 C -0.164 4.164 9 C 0.173 3.827 10 N -0.205 5.205 11 C -0.086 4.086 12 C 0.056 3.944 13 N -0.316 5.316 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.549 5.549 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.025 3.975 23 C -0.076 4.076 24 N -0.268 5.268 25 C -0.095 4.095 26 C -0.158 4.158 27 C -0.078 4.078 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.466 20.209 3.442 20.505 hybrid contribution -0.307 -2.435 -0.127 2.457 sum -0.773 17.774 3.315 18.097 Atomic orbital electron populations 1.20565 0.85396 1.04182 1.03883 1.23040 0.97801 0.82414 0.89860 1.67984 1.05960 1.30181 1.17869 1.23551 0.94508 0.96885 1.00734 1.83833 0.91574 1.03125 1.78644 1.25535 1.00230 0.96627 1.10679 1.20975 0.91531 0.94804 0.99112 1.20012 0.93776 0.93681 1.08884 1.20502 0.85878 0.91802 0.84554 1.60132 1.53184 1.01546 1.05677 1.23029 1.00456 0.96268 0.88825 1.20878 0.95395 0.88061 0.90048 1.44067 1.82005 1.05885 0.99656 1.19220 1.29547 0.83358 1.06071 0.91604 1.25092 0.97138 0.97803 0.99363 1.69987 1.32644 1.36517 1.15712 0.86204 0.78442 0.84363 0.77641 1.20258 1.21564 1.21643 1.20975 0.95741 0.89954 0.90825 1.22719 1.00338 0.95979 0.88583 1.68492 1.10425 1.30479 1.17403 1.21078 0.88051 0.97115 1.03241 1.22345 0.98229 0.93379 1.01871 1.20925 0.85783 0.98887 1.02191 0.89597 0.89687 0.89364 0.93588 0.92357 0.95248 0.88884 0.93599 0.95365 0.92041 0.92223 0.93431 0.89759 0.89091 0.90527 0.89818 0.90648 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.30 36.01 0.37 -0.54 16 2 C 0.34 5.30 7.64 -157.37 -1.20 4.10 16 3 N -0.50 -8.01 10.37 -9.68 -0.10 -8.11 16 4 C 0.09 1.48 7.67 -16.25 -0.12 1.36 16 5 S 0.17 2.08 23.23 -107.50 -2.50 -0.42 16 6 C -0.22 -2.63 7.24 -35.27 -0.26 -2.89 16 7 C -0.05 -0.75 6.60 -102.10 -0.67 -1.43 16 8 C -0.15 -2.45 6.07 -104.86 -0.64 -3.09 16 9 C 0.42 7.44 5.35 -154.51 -0.83 6.62 16 10 N -0.48 -8.87 4.52 -172.18 -0.78 -9.65 16 11 C 0.04 0.84 5.39 -3.70 -0.02 0.82 16 12 C 0.18 4.27 5.38 -3.60 -0.02 4.25 16 13 N -0.59 -14.53 3.03 -172.02 -0.52 -15.05 16 14 C -0.25 -6.77 9.62 -15.06 -0.14 -6.92 16 15 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 16 C 0.00 0.13 5.01 -17.43 -0.09 0.04 16 17 N -0.90 -25.53 11.11 55.49 0.62 -24.92 16 18 Si 0.90 21.34 29.57 -169.99 -5.03 16.32 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 C 0.15 3.12 6.69 -3.61 -0.02 3.10 16 23 C 0.05 0.95 5.44 -3.70 -0.02 0.93 16 24 N -0.55 -9.62 9.82 -9.58 -0.09 -9.72 16 25 C -0.06 -0.70 6.82 -26.20 -0.18 -0.88 16 26 C -0.12 -1.12 7.13 -25.53 -0.18 -1.30 16 27 C -0.04 -0.35 6.82 -26.32 -0.18 -0.52 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 32 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.43 6.20 -51.93 -0.32 2.11 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.22 7.95 -51.93 -0.41 0.80 16 38 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 39 H 0.05 0.94 8.12 -51.92 -0.42 0.52 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -30.28 374.40 -13.58 -43.86 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.61 Total: -1.62 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -4.20 Total: 3.66 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -0.88 Total: -67.43 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.50 Total: -0.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.28 -13.58 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299562892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.183 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds