Wall clock time and date at job start Wed Apr 1 2020 02:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 C 1.52996 * 109.47078 * 119.99865 * 2 1 3 5 5 H 1.09000 * 109.47454 * 297.86746 * 4 2 1 6 6 C 1.50701 * 109.47369 * 57.87298 * 4 2 1 7 7 O 1.21281 * 120.00038 * 111.30876 * 6 4 2 8 8 N 1.34776 * 119.99654 * 291.31642 * 6 4 2 9 9 C 1.46499 * 119.99767 * 176.26318 * 8 6 4 10 10 C 1.53005 * 109.46922 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99986 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99937 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00258 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47379 * 89.99803 * 15 13 11 17 17 H 1.48501 * 109.47717 * 210.00027 * 15 13 11 18 18 H 1.48505 * 109.47214 * 329.99961 * 15 13 11 19 19 N 1.46504 * 109.47101 * 177.87151 * 4 2 1 20 20 C 1.34521 * 124.46237 * 306.01643 * 19 4 2 21 21 O 1.21445 * 125.70987 * 0.02562 * 20 19 4 22 22 C 1.47816 * 108.58342 * 179.97438 * 20 19 4 23 23 C 1.38565 * 134.29818 * 179.97438 * 22 20 19 24 24 C 1.38610 * 119.71701 * 180.02562 * 23 22 20 25 25 C 1.38232 * 120.45813 * 359.97438 * 24 23 22 26 26 C 1.38602 * 120.46268 * 359.97438 * 25 24 23 27 27 C 1.38572 * 119.72154 * 0.02562 * 26 25 24 28 28 C 1.34531 * 124.45979 * 125.99571 * 19 4 2 29 29 O 1.21447 * 125.70678 * 0.02562 * 28 19 4 30 30 H 1.09004 * 109.47098 * 305.81016 * 1 2 3 31 31 H 1.09002 * 109.46990 * 65.80433 * 1 2 3 32 32 H 1.08990 * 109.47445 * 185.81156 * 1 2 3 33 33 H 1.08995 * 109.47243 * 239.99913 * 2 1 3 34 34 H 1.09007 * 109.47157 * 185.25463 * 3 2 1 35 35 H 1.09006 * 109.46753 * 305.25063 * 3 2 1 36 36 H 1.08990 * 109.47137 * 65.25598 * 3 2 1 37 37 H 0.96998 * 120.00467 * 356.26496 * 8 6 4 38 38 H 1.08994 * 109.47538 * 299.99812 * 9 8 6 39 39 H 1.09007 * 109.46880 * 60.00373 * 9 8 6 40 40 H 1.08997 * 109.47462 * 300.00242 * 10 9 8 41 41 H 1.08995 * 109.47124 * 60.00237 * 10 9 8 42 42 H 0.96997 * 119.99935 * 179.97438 * 14 13 11 43 43 H 1.07999 * 120.14473 * 0.04046 * 23 22 20 44 44 H 1.08000 * 119.77200 * 180.26742 * 24 23 22 45 45 H 1.08011 * 119.76797 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.14293 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.7082 -0.1858 2.1388 6 6 1.4950 -2.1260 1.2760 7 8 2.2408 -3.0689 1.1155 8 7 0.1789 -2.3345 1.4781 9 6 -0.3643 -3.6939 1.4227 10 6 -1.8711 -3.6521 1.6853 11 6 -2.4298 -5.0505 1.6289 12 1 -1.7756 -5.8856 1.4257 13 6 -3.7761 -5.2639 1.8357 14 7 -4.2638 -6.4843 1.7861 15 14 -4.9078 -3.8194 2.1851 16 1 -5.4420 -3.2882 0.9054 17 1 -6.0336 -4.2687 3.0430 18 1 -4.1475 -2.7528 2.8848 19 7 3.5041 -0.7658 1.2239 20 6 4.2333 -1.2519 0.2033 21 8 3.7891 -1.7157 -0.8275 22 6 5.6657 -1.1258 0.5457 23 6 6.8475 -1.4501 -0.1009 24 6 8.0615 -1.1930 0.5165 25 6 8.1008 -0.6152 1.7717 26 6 6.9269 -0.2845 2.4301 27 6 5.7057 -0.5357 1.8251 28 6 4.2964 -0.3257 2.2180 29 8 3.9171 0.1636 3.2628 30 1 -0.3633 0.6013 0.8334 31 1 -0.3633 0.4212 -0.9374 32 1 -0.3634 -1.0223 0.1040 33 1 1.8933 -0.5138 -0.8899 34 1 3.1260 1.4440 -0.0941 35 1 1.6019 1.9828 -0.8393 36 1 1.7556 1.9284 0.9332 37 1 -0.4086 -1.5845 1.6602 38 1 -0.1787 -4.1195 0.4366 39 1 0.1194 -4.3096 2.1811 40 1 -2.0564 -3.2267 2.6715 41 1 -2.3550 -3.0363 0.9272 42 1 -5.2109 -6.6344 1.9320 43 1 6.8228 -1.9011 -1.0820 44 1 8.9833 -1.4415 0.0115 45 1 9.0531 -0.4202 2.2427 46 1 6.9636 0.1671 3.4104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342652383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:36 Heat of formation + Delta-G solvation = -49.725271 kcal Electronic energy + Delta-G solvation = -30408.679323 eV Core-core repulsion = 26264.580589 eV Total energy + Delta-G solvation = -4144.098735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72107 -39.93275 -38.78328 -38.54430 -36.41134 -35.61532 -34.98856 -32.81842 -31.82123 -31.54351 -30.36255 -28.04216 -27.33749 -25.36073 -24.95768 -23.60396 -22.58394 -21.27584 -20.76125 -20.69682 -19.71446 -18.17560 -17.58701 -17.25584 -16.94521 -16.64054 -16.29247 -15.54805 -15.40316 -15.26224 -15.05244 -14.70661 -14.40826 -14.20832 -14.17115 -14.01891 -13.89034 -13.53280 -13.10126 -12.94600 -12.81926 -12.73793 -12.61429 -12.38826 -12.11216 -11.72326 -11.53719 -11.30846 -11.24397 -11.13729 -10.70418 -10.51968 -10.41890 -10.27793 -10.20999 -9.96858 -9.67416 -9.62979 -9.42089 -9.25249 -8.66184 -8.55935 -6.12046 -4.12445 -0.23990 0.56365 1.74539 1.96235 2.68572 2.73584 3.21367 3.24376 3.31016 3.32127 3.33178 3.49520 4.03352 4.20962 4.36602 4.38070 4.43937 4.55688 4.62087 4.65029 4.80084 4.88971 4.95667 5.02449 5.20672 5.21745 5.30050 5.35143 5.42370 5.53489 5.57238 5.64683 5.68387 5.75499 5.82528 6.00642 6.04958 6.09041 6.15907 6.18436 6.47689 6.52019 6.62769 7.02198 7.08083 7.19673 7.46892 7.63965 7.73751 8.35579 8.44298 8.92160 9.47715 11.00981 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002619 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.879696 B =10687.757868 C =11129.161760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.127 3.873 5 H 0.129 0.871 6 C 0.501 3.499 7 O -0.527 6.527 8 N -0.719 5.719 9 C 0.128 3.872 10 C -0.022 4.022 11 C -0.523 4.523 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 N -0.557 5.557 20 C 0.579 3.421 21 O -0.442 6.442 22 C -0.130 4.130 23 C -0.047 4.047 24 C -0.096 4.096 25 C -0.100 4.100 26 C -0.045 4.045 27 C -0.139 4.139 28 C 0.578 3.422 29 O -0.466 6.466 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.265 0.735 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.098 19.592 -2.374 31.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.022 3.978 5 H 0.146 0.854 6 C 0.284 3.716 7 O -0.403 6.403 8 N -0.373 5.373 9 C 0.007 3.993 10 C -0.059 4.059 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 N -0.298 5.298 20 C 0.368 3.632 21 O -0.311 6.311 22 C -0.134 4.134 23 C -0.066 4.066 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.064 4.064 27 C -0.142 4.142 28 C 0.367 3.633 29 O -0.338 6.338 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.237 0.763 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 23.904 18.778 -2.479 30.498 hybrid contribution -1.082 0.865 0.382 1.437 sum 22.822 19.644 -2.097 30.184 Atomic orbital electron populations 1.22308 0.93037 1.04523 1.03225 1.21449 0.97518 0.96622 0.96956 1.21815 1.00721 0.94840 1.02648 1.21439 0.77168 0.96198 1.03026 0.85372 1.20361 0.83291 0.90229 0.77686 1.90726 1.57482 1.43407 1.48646 1.46632 1.07659 1.11926 1.71054 1.21588 0.95878 0.80066 1.01817 1.19801 0.90242 0.99103 0.96792 1.20896 0.94138 0.91573 1.49520 0.90617 1.24999 0.98059 0.95678 0.94532 1.69903 1.13905 1.20175 1.49609 0.86757 0.80562 0.83132 0.78671 1.20176 1.21255 1.19039 1.46123 1.07372 1.57339 1.18987 1.18186 0.86231 0.76161 0.82660 1.90791 1.77596 1.38062 1.24608 1.20624 0.94080 1.02406 0.96258 1.20826 0.89743 0.95971 1.00075 1.21470 0.97835 0.96961 0.95101 1.21448 0.98286 0.97201 0.94884 1.20798 0.89562 0.96214 0.99841 1.20535 0.93857 1.03436 0.96384 1.18352 0.86265 0.76268 0.82435 1.90803 1.80527 1.39757 1.22687 0.91808 0.91070 0.89863 0.88383 0.93231 0.91461 0.92080 0.76278 0.91663 0.91776 0.95936 0.96329 0.92527 0.83956 0.84065 0.84086 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.16 37.16 0.30 -1.49 16 2 C -0.11 -1.22 2.32 -90.62 -0.21 -1.43 16 3 C -0.14 -1.33 8.98 37.16 0.33 -0.99 16 4 C 0.13 1.72 2.23 -69.08 -0.15 1.57 16 5 H 0.13 1.53 7.60 -51.93 -0.39 1.13 16 6 C 0.50 8.64 6.77 -10.99 -0.07 8.57 16 7 O -0.53 -11.15 15.11 -3.68 -0.06 -11.21 16 8 N -0.72 -12.00 3.98 -60.29 -0.24 -12.24 16 9 C 0.13 2.64 5.62 -4.04 -0.02 2.62 16 10 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 11 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 12 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 15 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 19 N -0.56 -7.72 1.74 -111.75 -0.19 -7.91 16 20 C 0.58 8.29 6.69 -12.46 -0.08 8.20 16 21 O -0.44 -7.41 15.45 -3.82 -0.06 -7.47 16 22 C -0.13 -1.45 6.40 -104.83 -0.67 -2.12 16 23 C -0.05 -0.38 10.09 -39.32 -0.40 -0.78 16 24 C -0.10 -0.50 10.04 -39.45 -0.40 -0.90 16 25 C -0.10 -0.51 10.03 -39.45 -0.40 -0.90 16 26 C -0.05 -0.33 10.09 -39.32 -0.40 -0.73 16 27 C -0.14 -1.48 6.41 -104.83 -0.67 -2.15 16 28 C 0.58 7.61 8.02 -12.46 -0.10 7.51 16 29 O -0.47 -6.85 17.44 5.41 0.09 -6.76 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.03 4.78 -51.93 -0.25 0.78 16 33 H 0.10 1.34 6.38 -51.93 -0.33 1.01 16 34 H 0.05 0.48 7.83 -51.92 -0.41 0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 5.54 6.33 -40.82 -0.26 5.28 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.41 8.14 -51.92 -0.42 0.98 16 40 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 41 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 45 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 46 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -35.87 382.12 -8.29 -44.17 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.22 Total: 2.69 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.48 Total: 3.26 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.34 Total: -46.76 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.02 Total: -25.43 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.87 -8.29 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342652383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.559 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds