Wall clock time and date at job start Wed Apr 1 2020 02:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47223 * 2 1 4 4 C 1.52996 * 109.47078 * 119.99865 * 2 1 3 5 5 H 1.09000 * 109.47454 * 297.86746 * 4 2 1 6 6 C 1.50701 * 109.47369 * 57.87298 * 4 2 1 7 7 O 1.21281 * 120.00038 * 111.30876 * 6 4 2 8 8 N 1.34776 * 119.99654 * 291.31642 * 6 4 2 9 9 C 1.46499 * 119.99767 * 176.26318 * 8 6 4 10 10 C 1.53005 * 109.46922 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99986 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99937 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00258 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47379 * 89.99803 * 15 13 11 17 17 H 1.48501 * 109.47717 * 210.00027 * 15 13 11 18 18 H 1.48505 * 109.47214 * 329.99961 * 15 13 11 19 19 N 1.46504 * 109.47101 * 177.87151 * 4 2 1 20 20 C 1.34521 * 124.46237 * 306.01643 * 19 4 2 21 21 O 1.21445 * 125.70987 * 0.02562 * 20 19 4 22 22 C 1.47816 * 108.58342 * 179.97438 * 20 19 4 23 23 C 1.38565 * 134.29818 * 179.97438 * 22 20 19 24 24 C 1.38610 * 119.71701 * 180.02562 * 23 22 20 25 25 C 1.38232 * 120.45813 * 359.97438 * 24 23 22 26 26 C 1.38602 * 120.46268 * 359.97438 * 25 24 23 27 27 C 1.38572 * 119.72154 * 0.02562 * 26 25 24 28 28 C 1.34531 * 124.45979 * 125.99571 * 19 4 2 29 29 O 1.21447 * 125.70678 * 0.02562 * 28 19 4 30 30 H 1.09004 * 109.47098 * 305.81016 * 1 2 3 31 31 H 1.09002 * 109.46990 * 65.80433 * 1 2 3 32 32 H 1.08990 * 109.47445 * 185.81156 * 1 2 3 33 33 H 1.08995 * 109.47243 * 239.99913 * 2 1 3 34 34 H 1.09007 * 109.47157 * 185.25463 * 3 2 1 35 35 H 1.09006 * 109.46753 * 305.25063 * 3 2 1 36 36 H 1.08990 * 109.47137 * 65.25598 * 3 2 1 37 37 H 0.96998 * 120.00467 * 356.26496 * 8 6 4 38 38 H 1.08994 * 109.47538 * 299.99812 * 9 8 6 39 39 H 1.09007 * 109.46880 * 60.00373 * 9 8 6 40 40 H 1.08997 * 109.47462 * 300.00242 * 10 9 8 41 41 H 1.08995 * 109.47124 * 60.00237 * 10 9 8 42 42 H 0.96997 * 119.99935 * 179.97438 * 14 13 11 43 43 H 1.07999 * 120.14473 * 0.04046 * 23 22 20 44 44 H 1.08000 * 119.77200 * 180.26742 * 24 23 22 45 45 H 1.08011 * 119.76797 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.14293 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.7082 -0.1858 2.1388 6 6 1.4950 -2.1260 1.2760 7 8 2.2408 -3.0689 1.1155 8 7 0.1789 -2.3345 1.4781 9 6 -0.3643 -3.6939 1.4227 10 6 -1.8711 -3.6521 1.6853 11 6 -2.4298 -5.0505 1.6289 12 1 -1.7756 -5.8856 1.4257 13 6 -3.7761 -5.2639 1.8357 14 7 -4.2638 -6.4843 1.7861 15 14 -4.9078 -3.8194 2.1851 16 1 -5.4420 -3.2882 0.9054 17 1 -6.0336 -4.2687 3.0430 18 1 -4.1475 -2.7528 2.8848 19 7 3.5041 -0.7658 1.2239 20 6 4.2333 -1.2519 0.2033 21 8 3.7891 -1.7157 -0.8275 22 6 5.6657 -1.1258 0.5457 23 6 6.8475 -1.4501 -0.1009 24 6 8.0615 -1.1930 0.5165 25 6 8.1008 -0.6152 1.7717 26 6 6.9269 -0.2845 2.4301 27 6 5.7057 -0.5357 1.8251 28 6 4.2964 -0.3257 2.2180 29 8 3.9171 0.1636 3.2628 30 1 -0.3633 0.6013 0.8334 31 1 -0.3633 0.4212 -0.9374 32 1 -0.3634 -1.0223 0.1040 33 1 1.8933 -0.5138 -0.8899 34 1 3.1260 1.4440 -0.0941 35 1 1.6019 1.9828 -0.8393 36 1 1.7556 1.9284 0.9332 37 1 -0.4086 -1.5845 1.6602 38 1 -0.1787 -4.1195 0.4366 39 1 0.1194 -4.3096 2.1811 40 1 -2.0564 -3.2267 2.6715 41 1 -2.3550 -3.0363 0.9272 42 1 -5.2109 -6.6344 1.9320 43 1 6.8228 -1.9011 -1.0820 44 1 8.9833 -1.4415 0.0115 45 1 9.0531 -0.4202 2.2427 46 1 6.9636 0.1671 3.4104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342652383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:35 Heat of formation + Delta-G solvation = -73.118415 kcal Electronic energy + Delta-G solvation = -30409.693726 eV Core-core repulsion = 26264.580589 eV Total energy + Delta-G solvation = -4145.113137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67503 -41.15919 -39.81806 -39.39676 -37.51181 -36.96521 -36.28082 -34.81511 -32.58254 -32.18820 -32.12752 -29.15554 -28.16068 -26.69014 -26.24609 -24.45675 -23.38107 -22.88781 -22.17204 -21.62926 -20.79577 -19.18953 -18.96852 -18.67383 -18.19686 -17.53130 -17.40735 -16.83972 -16.57563 -16.41658 -16.23466 -15.80878 -15.41793 -15.41495 -15.27548 -15.22519 -15.04610 -14.73419 -14.65275 -14.02510 -13.84566 -13.72852 -13.43584 -13.24836 -13.11717 -13.09979 -12.79216 -12.52760 -12.28220 -12.25634 -12.14448 -12.09686 -11.77098 -11.68550 -11.58027 -11.51113 -11.27401 -10.80776 -10.72127 -10.22716 -10.19830 -10.12919 -8.31998 -6.39914 -1.02543 -0.02081 0.97010 0.98495 1.31825 1.37995 1.41017 1.52117 1.69604 2.13753 2.35441 2.54738 2.63647 3.02944 3.16541 3.37577 3.45363 3.58060 3.61594 3.90872 4.05480 4.05934 4.17719 4.20512 4.26199 4.31225 4.33617 4.43059 4.47650 4.67733 4.69095 4.77549 4.83206 4.84084 4.93202 5.01047 5.05016 5.19340 5.20662 5.26196 5.27067 5.31625 5.34823 5.49301 5.58090 5.69979 6.04402 6.18103 6.31393 6.49668 6.67271 7.00728 7.24573 8.84895 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.002619 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.879696 B =10687.757868 C =11129.161760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.135 4.135 4 C 0.129 3.871 5 H 0.148 0.852 6 C 0.498 3.502 7 O -0.573 6.573 8 N -0.705 5.705 9 C 0.144 3.856 10 C -0.011 4.011 11 C -0.540 4.540 12 H 0.026 0.974 13 C 0.004 3.996 14 N -0.950 5.950 15 Si 0.959 3.041 16 H -0.263 1.263 17 H -0.287 1.287 18 H -0.235 1.235 19 N -0.564 5.564 20 C 0.572 3.428 21 O -0.484 6.484 22 C -0.160 4.160 23 C -0.051 4.051 24 C -0.080 4.080 25 C -0.082 4.082 26 C -0.042 4.042 27 C -0.160 4.160 28 C 0.574 3.426 29 O -0.490 6.490 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.268 0.732 43 H 0.149 0.851 44 H 0.182 0.818 45 H 0.185 0.815 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.958 23.432 -1.569 35.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.120 4.120 3 C -0.192 4.192 4 C 0.024 3.976 5 H 0.166 0.834 6 C 0.283 3.717 7 O -0.452 6.452 8 N -0.360 5.360 9 C 0.021 3.979 10 C -0.049 4.049 11 C -0.579 4.579 12 H 0.045 0.955 13 C -0.193 4.193 14 N -0.590 5.590 15 Si 0.781 3.219 16 H -0.188 1.188 17 H -0.213 1.213 18 H -0.158 1.158 19 N -0.304 5.304 20 C 0.362 3.638 21 O -0.356 6.356 22 C -0.163 4.163 23 C -0.070 4.070 24 C -0.098 4.098 25 C -0.100 4.100 26 C -0.060 4.060 27 C -0.164 4.164 28 C 0.366 3.634 29 O -0.363 6.363 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.258 0.742 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.167 0.833 44 H 0.199 0.801 45 H 0.202 0.798 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 25.785 22.666 -1.665 34.372 hybrid contribution -1.461 -0.447 0.106 1.532 sum 24.324 22.219 -1.559 32.982 Atomic orbital electron populations 1.22301 0.91788 1.03633 1.05155 1.21429 0.98472 0.97478 0.94614 1.21767 1.00173 0.93201 1.04087 1.21534 0.77641 0.93492 1.04939 0.83441 1.21094 0.82838 0.91554 0.76195 1.90700 1.58606 1.45322 1.50548 1.46365 1.08000 1.10798 1.70808 1.21096 0.94981 0.81937 0.99935 1.19651 0.90941 0.96143 0.98145 1.21216 0.94144 0.93012 1.49509 0.95534 1.26098 0.99996 0.99212 0.94003 1.70078 1.14602 1.23221 1.51127 0.85537 0.77832 0.79298 0.79237 1.18756 1.21253 1.15781 1.46269 1.07442 1.57375 1.19340 1.18823 0.87910 0.74998 0.82021 1.90748 1.78618 1.40133 1.26104 1.20561 0.93034 1.05348 0.97394 1.21162 0.89818 0.95488 1.00490 1.21966 0.97911 0.94882 0.95027 1.21986 0.98987 0.94680 0.94315 1.21204 0.88980 0.95321 1.00535 1.20497 0.93457 1.05703 0.96724 1.18813 0.87463 0.75388 0.81778 1.90769 1.81174 1.41040 1.23331 0.89132 0.89745 0.92106 0.91080 0.94155 0.89772 0.90699 0.74161 0.93724 0.93914 0.94318 0.94178 0.92279 0.83334 0.80079 0.79777 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.16 71.98 0.59 -2.67 16 2 C -0.10 -2.30 2.32 -10.79 -0.03 -2.32 16 3 C -0.14 -2.34 8.98 71.98 0.65 -1.69 16 4 C 0.13 3.55 2.23 44.24 0.10 3.65 16 5 H 0.15 3.41 7.60 -2.39 -0.02 3.39 16 6 C 0.50 17.85 6.77 87.66 0.59 18.44 16 7 O -0.57 -25.86 15.11 5.80 0.09 -25.77 16 8 N -0.70 -23.74 3.98 -463.05 -1.84 -25.59 16 9 C 0.14 6.16 5.62 86.38 0.49 6.64 16 10 C -0.01 -0.50 4.16 29.85 0.12 -0.38 16 11 C -0.54 -31.35 9.66 25.60 0.25 -31.10 16 12 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 13 C 0.00 0.24 5.47 84.65 0.46 0.70 16 14 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 15 Si 0.96 42.44 27.47 68.60 1.88 44.32 16 16 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 17 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.23 -9.18 6.54 99.48 0.65 -8.53 16 19 N -0.56 -16.24 1.74 -744.38 -1.30 -17.54 16 20 C 0.57 17.39 6.69 86.82 0.58 17.97 16 21 O -0.48 -17.60 15.45 5.29 0.08 -17.51 16 22 C -0.16 -3.61 6.40 -20.00 -0.13 -3.73 16 23 C -0.05 -0.74 10.09 22.44 0.23 -0.52 16 24 C -0.08 -0.52 10.04 22.36 0.22 -0.30 16 25 C -0.08 -0.45 10.03 22.36 0.22 -0.23 16 26 C -0.04 -0.50 10.09 22.44 0.23 -0.28 16 27 C -0.16 -3.34 6.41 -20.00 -0.13 -3.46 16 28 C 0.57 15.39 8.02 86.81 0.70 16.08 16 29 O -0.49 -14.41 17.44 -3.55 -0.06 -14.47 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.44 4.78 -2.39 -0.01 1.43 16 33 H 0.07 2.04 6.38 -2.39 -0.02 2.03 16 34 H 0.04 0.77 7.83 -2.38 -0.02 0.75 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 10.99 6.33 -92.71 -0.59 10.40 16 38 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 41 H 0.04 1.66 7.57 -2.39 -0.02 1.64 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.18 -0.21 8.06 -2.91 -0.02 -0.23 16 45 H 0.18 -0.47 8.06 -2.90 -0.02 -0.50 16 46 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -85.68 382.12 4.67 -81.01 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.38 Total: 18.35 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 5.14 Total: 16.80 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -2.84 Total: -102.72 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: 0.11 Total: -57.76 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -85.68 4.67 -81.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342652383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.894 kcal (2) G-P(sol) polarization free energy of solvation -85.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds