Wall clock time and date at job start Wed Apr 1 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 C 1.50703 * 109.47175 * 240.00069 * 2 1 3 5 5 H 1.08005 * 119.99634 * 240.00517 * 4 2 1 6 6 C 1.37871 * 120.00022 * 60.00076 * 4 2 1 7 7 N 1.31513 * 120.00544 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99880 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47160 * 60.00343 * 8 6 4 10 10 H 1.48510 * 109.47186 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47323 * 299.99930 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00140 * 2 1 3 13 13 N 1.46497 * 109.46991 * 299.99542 * 12 2 1 14 14 C 1.33796 * 124.18317 * 270.14646 * 13 12 2 15 15 O 1.21538 * 123.76823 * 0.07803 * 14 13 12 16 16 N 1.34526 * 112.45867 * 180.30692 * 14 13 12 17 17 C 1.47308 * 106.61861 * 359.74688 * 16 14 13 18 18 H 1.09001 * 110.60270 * 241.47011 * 17 16 14 19 19 C 1.50710 * 110.72752 * 118.59228 * 17 16 14 20 20 C 1.38284 * 120.11215 * 325.74723 * 19 17 16 21 21 C 1.37938 * 120.34650 * 179.87402 * 20 19 17 22 22 C 1.39286 * 120.23937 * 0.09436 * 21 20 19 23 23 C 1.38877 * 118.87752 * 0.13755 * 22 21 20 24 24 C 1.37749 * 120.78495 * 359.38458 * 23 22 21 25 25 C 1.51643 * 107.04012 * 179.45195 * 23 22 21 26 26 C 1.54709 * 101.91814 * 344.50141 * 25 23 22 27 27 O 1.36133 * 129.88016 * 180.56941 * 22 21 20 28 28 C 1.34772 * 124.17263 * 89.99987 * 13 12 2 29 29 O 1.21233 * 127.16267 * 359.97438 * 28 13 12 30 30 H 1.08999 * 109.46788 * 300.00503 * 1 2 3 31 31 H 1.09000 * 109.46936 * 59.99664 * 1 2 3 32 32 H 1.08992 * 109.47343 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47112 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47201 * 299.99387 * 3 2 1 35 35 H 1.08995 * 109.46890 * 60.00199 * 3 2 1 36 36 H 0.96987 * 120.00777 * 179.97438 * 7 6 4 37 37 H 1.09006 * 109.47047 * 179.97438 * 12 2 1 38 38 H 1.08992 * 109.46996 * 59.99864 * 12 2 1 39 39 H 0.96997 * 126.69212 * 179.76945 * 16 14 13 40 40 H 1.07995 * 119.82771 * 359.84760 * 20 19 17 41 41 H 1.07997 * 119.87316 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.00565 * 180.55675 * 24 23 22 43 43 H 1.09000 * 110.94588 * 226.34471 * 25 23 22 44 44 H 1.09001 * 110.96925 * 102.66794 * 25 23 22 45 45 H 1.08994 * 110.74824 * 266.98424 * 26 25 23 46 46 H 1.09000 * 110.74366 * 143.63510 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8260 -0.4206 -5.2205 11 1 3.8064 -1.1210 -4.0082 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 2.2036 0.9646 3.0575 15 8 3.2734 1.4026 2.6825 16 7 1.5449 1.4229 4.1372 17 6 0.3057 0.6332 4.2413 18 1 -0.5686 1.2780 4.1527 19 6 0.2685 -0.1324 5.5390 20 6 1.4378 -0.6282 6.0857 21 6 1.4097 -1.3273 7.2745 22 6 0.2016 -1.5416 7.9338 23 6 -0.9665 -1.0429 7.3723 24 6 -0.9349 -0.3366 6.1901 25 6 -2.1055 -1.4369 8.2927 26 6 -1.4456 -2.5285 9.1683 27 8 -0.0506 -2.1861 9.1061 28 6 0.3889 -0.3175 3.0635 29 8 -0.4198 -1.1631 2.7465 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7096 1.1618 -3.4844 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2492 39 1 1.8300 2.1347 4.7312 40 1 2.3780 -0.4677 5.5791 41 1 2.3276 -1.7109 7.6948 42 1 -1.8500 0.0533 5.7693 43 1 -2.9416 -1.8455 7.7252 44 1 -2.4262 -0.5910 8.9007 45 1 -1.6194 -3.5186 8.7471 46 1 -1.8112 -2.4742 10.1937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420085849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:06 Heat of formation + Delta-G solvation = -40.183112 kcal Electronic energy + Delta-G solvation = -30772.122428 eV Core-core repulsion = 26628.437473 eV Total energy + Delta-G solvation = -4143.684956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27952 -41.29995 -38.30264 -37.95763 -36.19713 -35.66314 -33.58367 -32.99573 -31.14240 -30.74964 -29.50408 -27.07134 -25.95046 -25.62761 -25.03396 -23.81116 -22.72952 -22.29601 -21.33861 -20.55397 -18.61751 -17.71171 -17.61996 -17.13587 -16.99768 -16.51515 -16.08822 -15.85040 -15.15037 -15.08657 -14.79489 -14.46145 -14.39810 -14.07277 -13.80942 -13.54208 -13.44251 -13.20889 -12.87265 -12.82813 -12.64166 -12.33897 -12.12864 -12.06525 -11.30706 -11.22548 -11.13953 -11.12077 -10.77276 -10.66013 -10.51939 -10.28757 -10.19763 -10.05131 -9.80354 -9.44993 -9.41234 -9.18390 -8.77374 -8.65175 -8.35920 -8.30943 -5.95164 -4.06561 0.90152 1.03469 1.96562 2.64092 2.91037 3.28297 3.33647 3.35884 3.37881 3.41764 3.49521 4.04673 4.15467 4.34181 4.41060 4.45102 4.55457 4.62481 4.79127 4.97803 5.03851 5.12982 5.28878 5.30855 5.35037 5.39694 5.52407 5.72277 5.89228 6.05938 6.09018 6.12863 6.21737 6.26727 6.29978 6.47149 6.84324 6.86964 6.93738 6.99462 7.10319 7.16071 7.48829 7.52720 7.68995 7.74968 7.77274 8.12800 8.18926 8.43547 8.51230 8.92769 9.58437 11.05907 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022723 B = 0.002672 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.962202 B =10475.532914 C =10877.231128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.055 3.945 3 C -0.121 4.121 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.561 5.561 14 C 0.702 3.298 15 O -0.533 6.533 16 N -0.730 5.730 17 C 0.140 3.860 18 H 0.129 0.871 19 C -0.121 4.121 20 C -0.060 4.060 21 C -0.136 4.136 22 C 0.112 3.888 23 C -0.176 4.176 24 C -0.041 4.041 25 C -0.109 4.109 26 C 0.051 3.949 27 O -0.305 6.305 28 C 0.529 3.471 29 O -0.460 6.460 30 H -0.002 1.002 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.001 0.999 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.436 0.564 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 -1.576 23.428 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.054 3.946 3 C -0.179 4.179 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.306 5.306 14 C 0.403 3.597 15 O -0.405 6.405 16 N -0.396 5.396 17 C 0.030 3.970 18 H 0.146 0.854 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.154 4.154 22 C 0.067 3.933 23 C -0.177 4.177 24 C -0.060 4.060 25 C -0.146 4.146 26 C -0.024 4.024 27 O -0.219 6.219 28 C 0.314 3.686 29 O -0.329 6.329 30 H 0.017 0.983 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.280 0.720 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.702 -1.835 22.948 23.717 hybrid contribution 0.177 -0.061 -0.614 0.642 sum -5.526 -1.896 22.334 23.085 Atomic orbital electron populations 1.21781 0.97482 0.99231 0.99599 1.18468 0.92979 0.93149 0.90027 1.21751 0.98840 0.97766 0.99533 1.20885 1.31722 1.12111 0.89874 0.92513 1.24867 0.94831 0.94889 0.98800 1.69813 1.36491 1.22641 1.23260 0.86635 0.79207 0.79740 0.82254 1.20298 1.21346 1.20262 1.22259 0.99649 0.95589 0.81652 1.46544 1.21023 1.34062 1.28931 1.15891 0.83817 0.79887 0.80097 1.91010 1.20241 1.61272 1.68013 1.45548 1.22484 1.40432 1.31104 1.20726 0.90947 0.92747 0.92561 0.85369 1.19318 0.93896 1.03107 0.95971 1.20717 0.98254 0.94776 0.94112 1.20207 0.95923 1.03713 0.95598 1.19616 0.94772 0.92992 0.85926 1.20672 0.95075 1.03936 0.97994 1.20076 0.97461 0.96082 0.92390 1.21793 0.97247 0.99110 0.96484 1.23864 0.78317 0.98422 1.01814 1.86831 1.28249 1.72804 1.34037 1.20451 0.81451 0.83531 0.83141 1.90783 1.42180 1.32058 1.67863 0.98266 0.89876 0.95146 0.94999 0.90126 0.97998 0.92974 0.89864 0.90113 0.72026 0.84968 0.85057 0.84996 0.88755 0.89049 0.90329 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 7.26 37.16 0.27 -2.76 16 2 C 0.05 1.34 0.57 -155.66 -0.09 1.25 16 3 C -0.12 -3.03 7.12 37.16 0.26 -2.77 16 4 C -0.51 -13.59 8.01 -34.44 -0.28 -13.86 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.13 2.71 4.67 -4.04 -0.02 2.69 16 13 N -0.56 -10.33 2.13 -120.73 -0.26 -10.59 16 14 C 0.70 12.12 7.05 -88.02 -0.62 11.50 16 15 O -0.53 -10.95 16.29 5.33 0.09 -10.86 16 16 N -0.73 -8.99 5.37 -60.32 -0.32 -9.31 16 17 C 0.14 1.69 3.90 -69.35 -0.27 1.42 16 18 H 0.13 1.26 8.07 -51.93 -0.42 0.84 16 19 C -0.12 -1.34 5.08 -104.56 -0.53 -1.87 16 20 C -0.06 -0.66 9.33 -39.67 -0.37 -1.03 16 21 C -0.14 -1.44 10.06 -39.30 -0.40 -1.84 16 22 C 0.11 1.21 7.04 -38.96 -0.27 0.94 16 23 C -0.18 -1.70 6.27 -104.10 -0.65 -2.36 16 24 C -0.04 -0.41 9.69 -39.72 -0.38 -0.80 16 25 C -0.11 -0.72 7.12 -26.52 -0.19 -0.91 16 26 C 0.05 0.33 8.01 38.06 0.30 0.63 16 27 O -0.31 -3.12 11.10 -20.16 -0.22 -3.34 16 28 C 0.53 8.90 5.98 -10.55 -0.06 8.83 16 29 O -0.46 -8.88 16.87 5.60 0.09 -8.78 16 30 H 0.00 -0.04 6.19 -51.93 -0.32 -0.36 16 31 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 35 H 0.00 0.02 6.16 -51.93 -0.32 -0.30 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 37 H 0.08 1.77 7.87 -51.93 -0.41 1.36 16 38 H 0.08 1.69 8.00 -51.93 -0.42 1.27 16 39 H 0.44 4.08 8.96 -40.82 -0.37 3.72 16 40 H 0.13 1.45 7.59 -52.49 -0.40 1.05 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.46 370.24 -9.14 -41.59 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.20 Total: 2.79 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.39 Total: 0.83 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.06 Total: -43.89 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.04 Total: -22.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.46 -9.14 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420085849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.409 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds