Wall clock time and date at job start Wed Apr 1 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 154.22262 * 3 2 1 5 5 C 1.53002 * 109.47264 * 79.90699 * 4 3 2 6 6 N 1.46496 * 109.47260 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99932 * 179.97438 * 6 5 4 8 8 O 1.21352 * 119.99886 * 0.02562 * 7 6 5 9 9 C 1.49352 * 119.99633 * 180.02562 * 7 6 5 10 10 O 1.21366 * 120.00406 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99707 * 180.02562 * 9 7 6 12 12 C 1.39717 * 120.00276 * 185.27462 * 11 9 7 13 13 C 1.38984 * 120.04902 * 213.34660 * 12 11 9 14 14 C 1.38110 * 120.03321 * 180.02562 * 13 12 11 15 15 C 1.38230 * 120.12982 * 359.68142 * 14 13 12 16 16 C 1.38774 * 120.09420 * 0.59761 * 15 14 13 17 17 O 1.35895 * 120.01966 * 179.70029 * 16 15 14 18 18 C 1.42910 * 116.99682 * 359.72501 * 17 16 15 19 19 C 1.52999 * 109.46581 * 180.02562 * 18 17 16 20 20 C 1.50711 * 109.46553 * 179.97438 * 19 18 17 21 21 H 1.07992 * 119.99797 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99827 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99783 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99764 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47477 * 59.99947 * 24 22 20 26 26 H 1.48503 * 109.47078 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47198 * 299.99649 * 24 22 20 28 28 C 1.38610 * 119.96227 * 359.42156 * 16 15 14 29 29 H 1.08998 * 109.47099 * 305.87438 * 1 2 3 30 30 H 1.09000 * 109.46622 * 65.87226 * 1 2 3 31 31 H 1.08994 * 109.46770 * 185.87417 * 1 2 3 32 32 H 1.09001 * 109.47675 * 319.90308 * 4 3 2 33 33 H 1.09003 * 109.47150 * 199.90152 * 4 3 2 34 34 H 1.09001 * 109.47094 * 59.99253 * 5 4 3 35 35 H 1.09003 * 109.46590 * 299.99795 * 5 4 3 36 36 H 0.96997 * 120.00353 * 0.02562 * 6 5 4 37 37 H 0.97008 * 119.99768 * 5.27861 * 11 9 7 38 38 H 1.07996 * 119.98909 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.93353 * 179.97438 * 14 13 12 40 40 H 1.08002 * 119.95230 * 180.29499 * 15 14 13 41 41 H 1.09003 * 109.46580 * 299.99856 * 18 17 16 42 42 H 1.08993 * 109.47222 * 59.99916 * 18 17 16 43 43 H 1.08994 * 109.47499 * 299.99237 * 19 18 17 44 44 H 1.08997 * 109.47328 * 60.00410 * 19 18 17 45 45 H 0.96999 * 119.99841 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.06040 * 180.25507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0003 5 6 4.6280 -0.2506 -1.4206 6 7 6.0930 -0.2487 -1.4210 7 6 6.7668 -0.4531 -2.5702 8 8 6.1600 -0.6382 -3.6047 9 6 8.2603 -0.4518 -2.5704 10 8 8.8672 -0.2662 -1.5359 11 7 8.9342 -0.6557 -3.7197 12 6 10.3270 -0.7644 -3.7031 13 6 11.0746 -0.2952 -4.7768 14 6 12.4513 -0.4034 -4.7602 15 6 13.0897 -0.9720 -3.6740 16 6 12.3482 -1.4475 -2.6016 17 8 12.9769 -2.0117 -1.5372 18 6 14.4029 -2.0882 -1.5919 19 6 14.9274 -2.7490 -0.3155 20 6 16.4312 -2.8302 -0.3734 21 1 16.9597 -2.4491 -1.2346 22 6 17.1320 -3.3921 0.6727 23 7 16.4882 -3.8566 1.7212 24 14 18.9959 -3.4921 0.6012 25 1 19.5610 -2.1238 0.4847 26 1 19.5051 -4.1335 1.8400 27 1 19.4035 -4.2980 -0.5776 28 6 10.9662 -1.3413 -2.6143 29 1 -0.3633 0.6022 0.8327 30 1 -0.3632 0.4201 -0.9379 31 1 -0.3633 -1.0222 0.1052 32 1 4.4823 -0.7840 0.6615 33 1 4.4806 0.9684 0.3495 34 1 4.2638 0.5352 -2.0824 35 1 4.2654 -1.2172 -1.7703 36 1 6.5780 -0.1012 -0.5941 37 1 8.4521 -0.7268 -4.5585 38 1 10.5787 0.1541 -5.6244 39 1 13.0306 -0.0386 -5.5955 40 1 14.1667 -1.0508 -3.6620 41 1 14.7020 -2.6806 -2.4566 42 1 14.8176 -1.0840 -1.6784 43 1 14.6283 -2.1570 0.5495 44 1 14.5127 -3.7533 -0.2295 45 1 16.9813 -4.2515 2.4572 46 1 10.3878 -1.7070 -1.7787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440732717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:45 Heat of formation + Delta-G solvation = -42.284318 kcal Electronic energy + Delta-G solvation = -27295.166111 eV Core-core repulsion = 23151.390040 eV Total energy + Delta-G solvation = -4143.776071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30378 -39.91250 -38.91555 -37.27617 -36.63168 -34.94687 -34.33631 -33.35548 -31.76222 -30.92550 -29.83994 -29.13149 -28.12455 -25.75591 -24.98126 -23.59783 -22.59565 -22.06016 -21.00120 -20.27950 -19.23037 -18.13973 -17.44162 -16.70532 -16.59594 -16.33498 -15.96184 -15.92935 -15.68711 -15.40911 -15.30273 -15.11964 -14.54018 -14.42373 -14.22899 -14.08892 -13.88820 -13.82043 -13.45840 -13.08620 -12.86095 -12.78651 -12.45003 -12.31921 -12.13011 -11.81170 -11.71021 -11.41922 -10.92650 -10.84199 -10.57329 -10.43625 -10.32528 -10.20761 -9.89899 -9.84638 -9.75476 -9.65479 -9.30787 -8.45287 -8.36308 -7.88531 -6.09399 -4.14305 0.81634 1.50014 1.59429 1.84043 2.24570 2.25838 2.84626 3.15049 3.29283 3.33729 3.35408 3.72371 3.84859 3.90802 4.10845 4.36422 4.41996 4.51890 4.82924 4.93815 5.04605 5.06435 5.13555 5.16728 5.26916 5.29977 5.32998 5.33319 5.37060 5.40845 5.58223 5.68472 5.72149 5.99947 6.03418 6.10631 6.25180 6.45927 6.54355 6.58744 6.70733 6.86204 6.98824 7.16354 7.35430 7.50648 7.60673 7.64989 7.80674 8.04963 8.24151 8.91026 9.49931 11.02087 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.001610 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.799010 B =17384.329390 C =19281.636077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.177 4.177 3 C -0.192 4.192 4 C -0.016 4.016 5 C 0.123 3.877 6 N -0.701 5.701 7 C 0.514 3.486 8 O -0.516 6.516 9 C 0.504 3.496 10 O -0.488 6.488 11 N -0.640 5.640 12 C 0.171 3.829 13 C -0.189 4.189 14 C -0.060 4.060 15 C -0.221 4.221 16 C 0.165 3.835 17 O -0.312 6.312 18 C 0.064 3.936 19 C 0.025 3.975 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.417 0.583 37 H 0.422 0.578 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.600 9.437 -9.701 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.177 4.177 3 C -0.193 4.193 4 C -0.053 4.053 5 C 0.000 4.000 6 N -0.355 5.355 7 C 0.295 3.705 8 O -0.392 6.392 9 C 0.285 3.715 10 O -0.361 6.361 11 N -0.287 5.287 12 C 0.077 3.923 13 C -0.209 4.209 14 C -0.079 4.079 15 C -0.240 4.240 16 C 0.117 3.883 17 O -0.224 6.224 18 C -0.009 4.009 19 C -0.012 4.012 20 C -0.566 4.566 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.183 4.183 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.260 0.740 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.713 9.248 -9.301 30.660 hybrid contribution 1.173 0.012 -0.103 1.177 sum -26.540 9.260 -9.403 29.641 Atomic orbital electron populations 1.18905 0.84483 1.03262 1.03239 1.22459 0.93958 1.01241 1.00012 1.21742 0.93045 1.01910 1.02564 1.18748 0.85395 1.04340 0.96790 1.21404 0.78135 1.03624 0.96848 1.45688 1.07527 1.71132 1.11117 1.19926 0.88045 0.78217 0.84356 1.90787 1.69720 1.47180 1.31472 1.20154 0.88393 0.78464 0.84489 1.90867 1.69332 1.44618 1.31237 1.43044 1.05572 1.69417 1.10698 1.17247 0.81150 0.97958 0.95895 1.20648 0.94090 1.06659 0.99538 1.20687 0.93398 0.96512 0.97277 1.21440 1.00996 1.06255 0.95335 1.18915 0.91533 0.90828 0.87031 1.86195 1.24246 1.74039 1.37952 1.23374 0.74491 1.00351 1.02730 1.19126 0.95328 0.96491 0.90252 1.20934 0.90733 1.40698 1.04239 0.92391 1.24983 0.98852 0.95070 0.95208 1.69969 1.35863 1.39511 1.07355 0.86545 0.84948 0.78399 0.77463 1.20096 1.21122 1.20095 1.20243 0.92287 1.05241 1.00500 0.90023 0.89972 0.90014 0.88468 0.88549 0.90281 0.90229 0.74632 0.73981 0.85762 0.85429 0.84848 0.92981 0.92969 0.95335 0.95379 0.92657 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.17 10.32 34.37 0.35 0.19 16 2 C -0.18 -1.29 14.13 -37.12 -0.52 -1.82 16 3 C -0.19 -1.44 13.34 -37.12 -0.50 -1.93 16 4 C -0.02 -0.08 5.82 -29.52 -0.17 -0.25 16 5 C 0.12 0.80 5.63 -4.04 -0.02 0.77 16 6 N -0.70 -5.31 5.55 -60.76 -0.34 -5.65 16 7 C 0.51 5.21 7.89 -11.63 -0.09 5.11 16 8 O -0.52 -6.08 16.48 5.49 0.09 -5.99 16 9 C 0.50 5.90 7.62 -11.63 -0.09 5.81 16 10 O -0.49 -7.00 14.16 5.48 0.08 -6.92 16 11 N -0.64 -7.04 5.32 -10.31 -0.05 -7.09 16 12 C 0.17 2.28 6.27 -83.78 -0.53 1.75 16 13 C -0.19 -2.19 9.96 -39.35 -0.39 -2.59 16 14 C -0.06 -0.74 10.03 -39.63 -0.40 -1.13 16 15 C -0.22 -3.37 9.04 -39.39 -0.36 -3.72 16 16 C 0.16 2.94 6.68 -39.25 -0.26 2.68 16 17 O -0.31 -6.56 10.13 -19.41 -0.20 -6.75 16 18 C 0.06 1.39 4.68 37.16 0.17 1.56 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.72 9.11 -34.43 -0.31 -15.03 16 21 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 24 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.16 -2.65 8.59 -39.23 -0.34 -2.99 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.42 2.66 7.94 -40.82 -0.32 2.34 16 37 H 0.42 3.60 8.30 -40.82 -0.34 3.26 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.13 1.97 6.29 -52.49 -0.33 1.64 16 41 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 42 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.14 2.42 6.42 -52.49 -0.34 2.08 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -34.27 405.42 -8.61 -42.88 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.32 Total: 2.40 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.70 Total: -9.44 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.34 Total: -38.50 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.03 Total: -19.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.27 -8.61 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440732717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.598 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds