Wall clock time and date at job start Wed Apr 1 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 154.22262 * 3 2 1 5 5 C 1.53002 * 109.47264 * 79.90699 * 4 3 2 6 6 N 1.46496 * 109.47260 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99932 * 179.97438 * 6 5 4 8 8 O 1.21352 * 119.99886 * 0.02562 * 7 6 5 9 9 C 1.49352 * 119.99633 * 180.02562 * 7 6 5 10 10 O 1.21366 * 120.00406 * 359.97438 * 9 7 6 11 11 N 1.34776 * 119.99707 * 180.02562 * 9 7 6 12 12 C 1.39717 * 120.00276 * 185.27462 * 11 9 7 13 13 C 1.38984 * 120.04902 * 213.34660 * 12 11 9 14 14 C 1.38110 * 120.03321 * 180.02562 * 13 12 11 15 15 C 1.38230 * 120.12982 * 359.68142 * 14 13 12 16 16 C 1.38774 * 120.09420 * 0.59761 * 15 14 13 17 17 O 1.35895 * 120.01966 * 179.70029 * 16 15 14 18 18 C 1.42910 * 116.99682 * 359.72501 * 17 16 15 19 19 C 1.52999 * 109.46581 * 180.02562 * 18 17 16 20 20 C 1.50711 * 109.46553 * 179.97438 * 19 18 17 21 21 H 1.07992 * 119.99797 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99827 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99783 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99764 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47477 * 59.99947 * 24 22 20 26 26 H 1.48503 * 109.47078 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47198 * 299.99649 * 24 22 20 28 28 C 1.38610 * 119.96227 * 359.42156 * 16 15 14 29 29 H 1.08998 * 109.47099 * 305.87438 * 1 2 3 30 30 H 1.09000 * 109.46622 * 65.87226 * 1 2 3 31 31 H 1.08994 * 109.46770 * 185.87417 * 1 2 3 32 32 H 1.09001 * 109.47675 * 319.90308 * 4 3 2 33 33 H 1.09003 * 109.47150 * 199.90152 * 4 3 2 34 34 H 1.09001 * 109.47094 * 59.99253 * 5 4 3 35 35 H 1.09003 * 109.46590 * 299.99795 * 5 4 3 36 36 H 0.96997 * 120.00353 * 0.02562 * 6 5 4 37 37 H 0.97008 * 119.99768 * 5.27861 * 11 9 7 38 38 H 1.07996 * 119.98909 * 0.02562 * 13 12 11 39 39 H 1.07997 * 119.93353 * 179.97438 * 14 13 12 40 40 H 1.08002 * 119.95230 * 180.29499 * 15 14 13 41 41 H 1.09003 * 109.46580 * 299.99856 * 18 17 16 42 42 H 1.08993 * 109.47222 * 59.99916 * 18 17 16 43 43 H 1.08994 * 109.47499 * 299.99237 * 19 18 17 44 44 H 1.08997 * 109.47328 * 60.00410 * 19 18 17 45 45 H 0.96999 * 119.99841 * 180.02562 * 23 22 20 46 46 H 1.08001 * 120.06040 * 180.25507 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 -0.0003 5 6 4.6280 -0.2506 -1.4206 6 7 6.0930 -0.2487 -1.4210 7 6 6.7668 -0.4531 -2.5702 8 8 6.1600 -0.6382 -3.6047 9 6 8.2603 -0.4518 -2.5704 10 8 8.8672 -0.2662 -1.5359 11 7 8.9342 -0.6557 -3.7197 12 6 10.3270 -0.7644 -3.7031 13 6 11.0746 -0.2952 -4.7768 14 6 12.4513 -0.4034 -4.7602 15 6 13.0897 -0.9720 -3.6740 16 6 12.3482 -1.4475 -2.6016 17 8 12.9769 -2.0117 -1.5372 18 6 14.4029 -2.0882 -1.5919 19 6 14.9274 -2.7490 -0.3155 20 6 16.4312 -2.8302 -0.3734 21 1 16.9597 -2.4491 -1.2346 22 6 17.1320 -3.3921 0.6727 23 7 16.4882 -3.8566 1.7212 24 14 18.9959 -3.4921 0.6012 25 1 19.5610 -2.1238 0.4847 26 1 19.5051 -4.1335 1.8400 27 1 19.4035 -4.2980 -0.5776 28 6 10.9662 -1.3413 -2.6143 29 1 -0.3633 0.6022 0.8327 30 1 -0.3632 0.4201 -0.9379 31 1 -0.3633 -1.0222 0.1052 32 1 4.4823 -0.7840 0.6615 33 1 4.4806 0.9684 0.3495 34 1 4.2638 0.5352 -2.0824 35 1 4.2654 -1.2172 -1.7703 36 1 6.5780 -0.1012 -0.5941 37 1 8.4521 -0.7268 -4.5585 38 1 10.5787 0.1541 -5.6244 39 1 13.0306 -0.0386 -5.5955 40 1 14.1667 -1.0508 -3.6620 41 1 14.7020 -2.6806 -2.4566 42 1 14.8176 -1.0840 -1.6784 43 1 14.6283 -2.1570 0.5495 44 1 14.5127 -3.7533 -0.2295 45 1 16.9813 -4.2515 2.4572 46 1 10.3878 -1.7070 -1.7787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440732717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:44 Heat of formation + Delta-G solvation = -65.020441 kcal Electronic energy + Delta-G solvation = -27296.152023 eV Core-core repulsion = 23151.390040 eV Total energy + Delta-G solvation = -4144.761983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.25390 -41.03699 -39.99604 -38.50248 -37.29363 -35.91808 -35.39983 -34.98922 -32.60875 -32.26892 -31.16788 -30.40302 -28.62934 -27.06873 -26.40951 -24.45846 -23.61540 -23.48925 -22.24801 -21.43396 -20.20585 -19.37506 -18.40857 -18.14909 -17.48519 -17.31625 -17.00008 -16.95076 -16.89943 -16.64899 -16.52143 -16.32679 -15.98077 -15.29361 -15.08104 -14.54539 -14.48370 -14.46398 -14.34205 -14.28562 -14.27722 -14.24111 -13.42484 -13.32831 -13.26755 -12.97995 -12.97506 -12.75209 -12.65434 -12.56347 -12.16816 -11.81666 -11.59171 -11.41912 -11.32013 -10.93323 -10.73701 -10.68631 -10.60697 -10.43133 -9.51238 -9.08268 -8.25525 -6.39705 -0.16168 0.44260 0.51324 1.02812 1.41907 1.46124 1.54013 1.67866 1.72950 1.94457 2.19474 2.40534 2.59076 2.78063 3.08926 3.19045 3.41741 3.86140 3.88350 4.04062 4.13193 4.17488 4.21618 4.28307 4.36677 4.39764 4.50802 4.60823 4.74643 4.75126 4.75471 4.79719 4.86985 4.90190 5.02050 5.10326 5.14031 5.16793 5.31041 5.37115 5.46784 5.48157 5.66299 5.73173 5.85488 6.07251 6.16081 6.53873 6.55842 6.66255 6.74638 6.75022 7.30602 8.87455 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.001610 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.799010 B =17384.329390 C =19281.636077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.192 4.192 3 C -0.219 4.219 4 C -0.010 4.010 5 C 0.127 3.873 6 N -0.687 5.687 7 C 0.520 3.480 8 O -0.533 6.533 9 C 0.504 3.496 10 O -0.518 6.518 11 N -0.630 5.630 12 C 0.171 3.829 13 C -0.169 4.169 14 C -0.050 4.050 15 C -0.228 4.228 16 C 0.126 3.874 17 O -0.343 6.343 18 C 0.084 3.916 19 C 0.027 3.973 20 C -0.547 4.547 21 H 0.073 0.927 22 C 0.002 3.998 23 N -0.932 5.932 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.284 1.284 27 H -0.263 1.263 28 C -0.181 4.181 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.423 0.577 37 H 0.436 0.564 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.063 0.937 43 H -0.004 1.004 44 H -0.003 1.003 45 H 0.266 0.734 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.597 10.829 -12.290 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.192 4.192 3 C -0.219 4.219 4 C -0.047 4.047 5 C 0.005 3.995 6 N -0.340 5.340 7 C 0.300 3.700 8 O -0.410 6.410 9 C 0.286 3.714 10 O -0.393 6.393 11 N -0.278 5.278 12 C 0.077 3.923 13 C -0.189 4.189 14 C -0.069 4.069 15 C -0.247 4.247 16 C 0.080 3.920 17 O -0.257 6.257 18 C 0.010 3.990 19 C -0.010 4.010 20 C -0.585 4.585 21 H 0.092 0.908 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.800 3.200 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.187 1.187 28 C -0.202 4.202 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.261 0.739 37 H 0.277 0.723 38 H 0.185 0.815 39 H 0.186 0.814 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.075 0.925 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -27.753 10.655 -11.915 32.027 hybrid contribution 0.977 -0.377 0.658 1.237 sum -26.776 10.278 -11.257 30.811 Atomic orbital electron populations 1.19112 0.82594 1.04271 1.04325 1.23363 0.95269 1.01034 0.99579 1.22303 0.93989 1.02433 1.03218 1.18759 0.84436 1.05475 0.96026 1.21424 0.77048 1.03291 0.97778 1.45688 1.08097 1.69579 1.10681 1.19610 0.87134 0.78477 0.84777 1.90783 1.69619 1.48497 1.32099 1.20486 0.89118 0.77629 0.84148 1.90865 1.70071 1.46035 1.32325 1.42990 1.04804 1.68705 1.11253 1.17368 0.82204 0.97304 0.95467 1.21145 0.93930 1.04258 0.99532 1.21153 0.93962 0.94699 0.97043 1.21597 1.01146 1.06473 0.95489 1.19193 0.92158 0.93187 0.87447 1.86098 1.23580 1.75723 1.40317 1.22916 0.75422 1.00462 1.00208 1.18972 0.95539 0.94693 0.91790 1.21381 0.91448 1.40727 1.04923 0.90843 1.26055 1.04687 0.94343 0.94584 1.70126 1.38228 1.40442 1.08286 0.85322 0.77827 0.79017 0.77811 1.18787 1.20888 1.18713 1.20223 0.91907 1.06752 1.01339 0.88810 0.88856 0.88997 0.87494 0.87180 0.90379 0.90755 0.73869 0.72299 0.81514 0.81401 0.84636 0.91661 0.91878 0.98585 0.98466 0.92495 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.32 70.18 0.72 0.41 16 2 C -0.19 -2.72 14.13 31.13 0.44 -2.28 16 3 C -0.22 -3.20 13.34 31.12 0.42 -2.78 16 4 C -0.01 -0.10 5.82 28.79 0.17 0.07 16 5 C 0.13 1.57 5.63 86.38 0.49 2.05 16 6 N -0.69 -10.05 5.55 -464.51 -2.58 -12.62 16 7 C 0.52 10.22 7.89 87.24 0.69 10.91 16 8 O -0.53 -12.03 16.48 -3.25 -0.05 -12.08 16 9 C 0.50 11.68 7.62 87.24 0.66 12.34 16 10 O -0.52 -15.27 14.16 -3.30 -0.05 -15.31 16 11 N -0.63 -12.99 5.32 -304.90 -1.62 -14.61 16 12 C 0.17 4.31 6.27 38.20 0.24 4.55 16 13 C -0.17 -3.28 9.96 22.42 0.22 -3.06 16 14 C -0.05 -1.05 10.03 22.24 0.22 -0.83 16 15 C -0.23 -6.66 9.04 22.40 0.20 -6.46 16 16 C 0.13 4.62 6.68 22.49 0.15 4.77 16 17 O -0.34 -15.27 10.13 -92.36 -0.94 -16.21 16 18 C 0.08 3.74 4.68 71.98 0.34 4.07 16 19 C 0.03 1.52 5.34 29.85 0.16 1.68 16 20 C -0.55 -31.05 9.11 25.60 0.23 -30.82 16 21 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 22 C 0.00 0.11 5.46 84.65 0.46 0.57 16 23 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 24 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 28 C -0.18 -6.11 8.59 22.50 0.19 -5.91 16 29 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.42 5.26 7.94 -92.71 -0.74 4.52 16 37 H 0.44 6.46 8.30 -92.70 -0.77 5.69 16 38 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.14 3.83 6.29 -2.91 -0.02 3.81 16 41 H 0.07 2.67 7.67 -2.39 -0.02 2.65 16 42 H 0.06 2.61 7.65 -2.39 -0.02 2.59 16 43 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.12 4.40 6.42 -2.91 -0.02 4.38 16 Total: -1.00 -77.85 405.42 2.61 -75.24 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.47 Total: 17.75 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 6.01 Total: -10.72 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.92 Total: -84.22 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.04 Total: -43.60 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.85 2.61 -75.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440732717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.216 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds