Wall clock time and date at job start Wed Apr 1 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47090 * 2 1 4 4 N 1.46505 * 109.47108 * 180.02562 * 3 2 1 5 5 C 1.46497 * 120.00082 * 263.24767 * 4 3 2 6 6 C 1.53001 * 109.46967 * 270.80932 * 5 4 3 7 7 F 1.39891 * 109.47130 * 299.99763 * 6 5 4 8 8 F 1.39893 * 109.47153 * 60.00271 * 6 5 4 9 9 C 1.34776 * 119.99823 * 83.24552 * 4 3 2 10 10 O 1.21363 * 119.99770 * 184.04291 * 9 4 3 11 11 C 1.49341 * 120.00186 * 4.04500 * 9 4 3 12 12 O 1.21382 * 120.00252 * 354.97435 * 11 9 4 13 13 N 1.34783 * 119.99985 * 174.97057 * 11 9 4 14 14 C 1.39932 * 119.99609 * 180.02562 * 13 11 9 15 15 C 1.40454 * 125.98430 * 359.97438 * 14 13 11 16 16 C 1.35213 * 107.86860 * 179.74024 * 15 14 13 17 17 N 1.34992 * 107.87227 * 0.42329 * 16 15 14 18 18 C 1.46506 * 125.96893 * 179.84015 * 17 16 15 19 19 C 1.50697 * 109.46929 * 124.71679 * 18 17 16 20 20 H 1.07999 * 120.00561 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99551 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00488 * 359.71715 * 21 19 18 23 23 Si 1.86802 * 119.99587 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47022 * 269.71894 * 23 21 19 25 25 H 1.48505 * 109.47567 * 29.71930 * 23 21 19 26 26 H 1.48503 * 109.47321 * 149.72174 * 23 21 19 27 27 N 1.31274 * 125.97533 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.46951 * 299.99613 * 1 2 3 29 29 H 1.09003 * 109.47348 * 59.99521 * 1 2 3 30 30 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46951 * 240.00387 * 2 1 3 32 32 H 1.09003 * 109.47348 * 120.00479 * 2 1 3 33 33 H 1.09003 * 109.47423 * 60.00420 * 3 2 1 34 34 H 1.08999 * 109.47400 * 299.99945 * 3 2 1 35 35 H 1.09002 * 109.47347 * 30.80690 * 5 4 3 36 36 H 1.09005 * 109.46942 * 150.80635 * 5 4 3 37 37 H 1.09003 * 109.46813 * 179.97438 * 6 5 4 38 38 H 0.96998 * 119.99787 * 0.02562 * 13 11 9 39 39 H 1.08004 * 126.06615 * 0.02562 * 15 14 13 40 40 H 1.07998 * 126.06611 * 180.26874 * 16 15 14 41 41 H 1.08996 * 109.46953 * 4.71612 * 18 17 16 42 42 H 1.08999 * 109.46776 * 244.71522 * 18 17 16 43 43 H 0.97004 * 119.99561 * 0.28350 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.5915 1.2590 6 6 4.4755 3.0769 1.5382 7 9 5.2229 3.6338 0.4951 8 9 3.2452 3.7359 1.6339 9 6 4.1784 1.3054 -1.1600 10 8 5.3897 1.2316 -1.1531 11 6 3.4339 1.2442 -2.4532 12 8 2.2202 1.2260 -2.4546 13 7 4.1097 1.2093 -3.6189 14 6 3.4120 1.1526 -4.8305 15 6 2.0156 1.1260 -4.9783 16 6 1.7392 1.0772 -6.3010 17 7 2.9121 1.0633 -6.9691 18 6 3.0729 1.0101 -8.4243 19 6 3.9210 2.1699 -8.8786 20 1 4.3019 2.8763 -8.1559 21 6 4.2100 2.3299 -10.2173 22 7 3.7501 1.4673 -11.0970 23 14 5.2619 3.7672 -10.7804 24 1 4.3890 4.9276 -11.0912 25 1 6.2125 4.1378 -9.7013 26 1 6.0207 3.3788 -11.9965 27 7 3.9484 1.1149 -6.0281 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.6557 1.1576 2.0718 36 1 5.1966 1.0779 1.1844 37 1 5.0205 3.1878 2.4757 38 1 5.0796 1.2235 -3.6177 39 1 1.2910 1.1461 -4.1776 40 1 0.7547 1.0511 -6.7443 41 1 2.0940 1.0673 -8.9003 42 1 3.5580 0.0744 -8.7022 43 1 3.2042 0.7207 -10.8045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444507079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:10 Heat of formation + Delta-G solvation = -79.046443 kcal Electronic energy + Delta-G solvation = -30386.945375 eV Core-core repulsion = 25719.638401 eV Total energy + Delta-G solvation = -4667.306975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.25929 -47.26691 -41.34016 -40.41551 -38.62916 -37.06001 -34.92042 -33.69714 -33.54695 -31.01073 -30.40820 -29.50562 -26.98008 -26.39642 -25.29509 -23.47991 -22.70929 -22.06773 -21.16770 -20.19326 -19.59673 -18.14090 -18.05576 -17.45342 -17.29943 -17.23307 -16.69597 -16.42702 -16.00502 -15.66835 -15.08588 -15.01011 -14.56971 -14.20919 -14.20319 -13.93134 -13.80328 -13.62582 -13.52616 -13.32097 -12.98946 -12.89354 -12.57671 -12.45499 -12.35389 -12.20777 -11.89841 -11.77785 -11.55259 -11.30281 -11.18751 -11.00452 -10.78925 -10.55626 -10.17771 -10.07072 -9.49223 -9.18876 -9.04308 -8.59904 -8.32398 -7.65489 -6.60583 -4.34839 1.09319 1.82591 2.53936 2.86957 2.90700 3.36621 3.39272 3.41153 3.55620 3.57653 3.60692 3.81628 4.00596 4.23317 4.31424 4.39802 4.68124 4.75464 4.86282 4.97134 5.09162 5.13023 5.14522 5.30874 5.49555 5.57483 5.64258 5.70794 5.83739 5.98707 6.02982 6.11427 6.26594 6.34270 6.50312 6.62813 6.69298 7.12776 7.18128 7.45707 7.63905 7.74854 7.87147 8.31444 8.43214 8.58533 9.33311 10.77312 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.002505 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.610846 B =11174.221251 C =12341.252823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.090 3.910 4 N -0.585 5.585 5 C 0.063 3.937 6 C 0.244 3.756 7 F -0.195 7.195 8 F -0.203 7.203 9 C 0.518 3.482 10 O -0.506 6.506 11 C 0.514 3.486 12 O -0.488 6.488 13 N -0.597 5.597 14 C 0.253 3.747 15 C -0.282 4.282 16 C 0.052 3.948 17 N -0.313 5.313 18 C 0.248 3.752 19 C -0.609 4.609 20 H 0.064 0.936 21 C 0.024 3.976 22 N -0.905 5.905 23 Si 1.079 2.921 24 H -0.285 1.285 25 H -0.286 1.286 26 H -0.281 1.281 27 N -0.291 5.291 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.423 0.577 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 -1.617 28.643 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.031 4.031 4 N -0.319 5.319 5 C -0.061 4.061 6 C 0.189 3.811 7 F -0.177 7.177 8 F -0.185 7.185 9 C 0.300 3.700 10 O -0.380 6.380 11 C 0.295 3.705 12 O -0.362 6.362 13 N -0.245 5.245 14 C 0.000 4.000 15 C -0.313 4.313 16 C -0.097 4.097 17 N -0.095 5.095 18 C 0.130 3.870 19 C -0.648 4.648 20 H 0.083 0.917 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.906 3.094 24 H -0.212 1.212 25 H -0.212 1.212 26 H -0.207 1.207 27 N -0.122 5.122 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.261 0.739 39 H 0.181 0.819 40 H 0.187 0.813 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.639 -0.959 26.481 26.629 hybrid contribution -0.997 -0.628 1.781 2.136 sum -3.636 -1.587 28.262 28.539 Atomic orbital electron populations 1.21627 0.94689 1.01860 1.02145 1.21821 0.96791 0.96320 1.02049 1.22462 0.76351 0.98525 1.05765 1.47638 1.08423 1.70822 1.04973 1.22767 1.01450 0.94220 0.87654 1.22484 0.78091 0.89952 0.90578 1.93052 1.76314 1.86972 1.61323 1.92991 1.45612 1.83117 1.96750 1.19958 0.87304 0.77738 0.84965 1.90794 1.13212 1.47204 1.86767 1.19770 0.87605 0.78746 0.84398 1.90614 1.12907 1.46589 1.86058 1.42004 1.11194 1.69307 1.02027 1.19002 0.91173 1.04365 0.85476 1.21514 0.93825 1.19697 0.96263 1.22583 0.92374 1.02362 0.92421 1.48875 1.01717 1.51406 1.07466 1.19811 0.98834 0.99413 0.68922 1.22132 1.35456 1.11395 0.95768 0.91723 1.25927 0.97710 1.02066 0.92396 1.70828 1.32746 1.13653 1.36776 0.83391 0.75930 0.74287 0.75821 1.21181 1.21163 1.20682 1.77436 1.12787 1.26921 0.95100 0.92958 0.91760 0.92631 0.91284 0.92607 0.90226 0.86158 0.86767 0.86289 0.86292 0.73950 0.81935 0.81283 0.93477 0.94610 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -1.08 5.77 -26.73 -0.15 -1.23 16 3 C 0.09 0.79 4.71 -4.04 -0.02 0.77 16 4 N -0.59 -5.59 2.41 -174.23 -0.42 -6.01 16 5 C 0.06 0.39 5.70 -4.04 -0.02 0.37 16 6 C 0.24 1.67 5.60 37.16 0.21 1.88 16 7 F -0.20 -2.20 16.55 2.25 0.04 -2.17 16 8 F -0.20 -1.75 16.30 2.25 0.04 -1.72 16 9 C 0.52 6.57 7.24 -11.64 -0.08 6.48 16 10 O -0.51 -7.22 15.73 5.49 0.09 -7.14 16 11 C 0.51 7.43 7.63 -11.63 -0.09 7.34 16 12 O -0.49 -7.08 9.00 5.47 0.05 -7.03 16 13 N -0.60 -9.77 5.43 -11.58 -0.06 -9.83 16 14 C 0.25 5.00 8.10 -154.55 -1.25 3.74 16 15 C -0.28 -5.22 9.60 -39.82 -0.38 -5.61 16 16 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 17 N -0.31 -7.16 3.67 -62.56 -0.23 -7.39 16 18 C 0.25 6.19 5.57 -5.19 -0.03 6.16 16 19 C -0.61 -17.07 9.24 -34.44 -0.32 -17.39 16 20 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 21 C 0.02 0.66 5.46 -17.82 -0.10 0.57 16 22 N -0.90 -26.24 13.65 55.43 0.76 -25.48 16 23 Si 1.08 25.05 29.90 -169.99 -5.08 19.96 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 N -0.29 -6.72 12.42 31.41 0.39 -6.33 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.72 7.07 -51.93 -0.37 0.35 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.56 7.34 -51.93 -0.38 0.18 16 34 H 0.12 1.31 5.35 -51.94 -0.28 1.03 16 35 H 0.11 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.12 0.73 7.35 -51.93 -0.38 0.35 16 37 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.42 6.48 8.30 -40.82 -0.34 6.14 16 39 H 0.16 2.75 5.91 -52.48 -0.31 2.44 16 40 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 41 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 42 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 43 H 0.27 7.55 7.22 -40.82 -0.29 7.26 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -33.81 371.50 -6.25 -40.06 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.34 Total: 4.31 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.07 Total: 3.17 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.44 Total: -55.04 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.14 Total: -14.17 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.81 -6.25 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444507079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.984 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds