Wall clock time and date at job start Wed Apr 1 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47090 * 2 1 4 4 N 1.46505 * 109.47108 * 180.02562 * 3 2 1 5 5 C 1.46497 * 120.00082 * 263.24767 * 4 3 2 6 6 C 1.53001 * 109.46967 * 270.80932 * 5 4 3 7 7 F 1.39891 * 109.47130 * 299.99763 * 6 5 4 8 8 F 1.39893 * 109.47153 * 60.00271 * 6 5 4 9 9 C 1.34776 * 119.99823 * 83.24552 * 4 3 2 10 10 O 1.21363 * 119.99770 * 184.04291 * 9 4 3 11 11 C 1.49341 * 120.00186 * 4.04500 * 9 4 3 12 12 O 1.21382 * 120.00252 * 354.97435 * 11 9 4 13 13 N 1.34783 * 119.99985 * 174.97057 * 11 9 4 14 14 C 1.39932 * 119.99609 * 180.02562 * 13 11 9 15 15 C 1.40454 * 125.98430 * 359.97438 * 14 13 11 16 16 C 1.35213 * 107.86860 * 179.74024 * 15 14 13 17 17 N 1.34992 * 107.87227 * 0.42329 * 16 15 14 18 18 C 1.46506 * 125.96893 * 179.84015 * 17 16 15 19 19 C 1.50697 * 109.46929 * 124.71679 * 18 17 16 20 20 H 1.07999 * 120.00561 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99551 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00488 * 359.71715 * 21 19 18 23 23 Si 1.86802 * 119.99587 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47022 * 269.71894 * 23 21 19 25 25 H 1.48505 * 109.47567 * 29.71930 * 23 21 19 26 26 H 1.48503 * 109.47321 * 149.72174 * 23 21 19 27 27 N 1.31274 * 125.97533 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.46951 * 299.99613 * 1 2 3 29 29 H 1.09003 * 109.47348 * 59.99521 * 1 2 3 30 30 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46951 * 240.00387 * 2 1 3 32 32 H 1.09003 * 109.47348 * 120.00479 * 2 1 3 33 33 H 1.09003 * 109.47423 * 60.00420 * 3 2 1 34 34 H 1.08999 * 109.47400 * 299.99945 * 3 2 1 35 35 H 1.09002 * 109.47347 * 30.80690 * 5 4 3 36 36 H 1.09005 * 109.46942 * 150.80635 * 5 4 3 37 37 H 1.09003 * 109.46813 * 179.97438 * 6 5 4 38 38 H 0.96998 * 119.99787 * 0.02562 * 13 11 9 39 39 H 1.08004 * 126.06615 * 0.02562 * 15 14 13 40 40 H 1.07998 * 126.06611 * 180.26874 * 16 15 14 41 41 H 1.08996 * 109.46953 * 4.71612 * 18 17 16 42 42 H 1.08999 * 109.46776 * 244.71522 * 18 17 16 43 43 H 0.97004 * 119.99561 * 0.28350 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.5915 1.2590 6 6 4.4755 3.0769 1.5382 7 9 5.2229 3.6338 0.4951 8 9 3.2452 3.7359 1.6339 9 6 4.1784 1.3054 -1.1600 10 8 5.3897 1.2316 -1.1531 11 6 3.4339 1.2442 -2.4532 12 8 2.2202 1.2260 -2.4546 13 7 4.1097 1.2093 -3.6189 14 6 3.4120 1.1526 -4.8305 15 6 2.0156 1.1260 -4.9783 16 6 1.7392 1.0772 -6.3010 17 7 2.9121 1.0633 -6.9691 18 6 3.0729 1.0101 -8.4243 19 6 3.9210 2.1699 -8.8786 20 1 4.3019 2.8763 -8.1559 21 6 4.2100 2.3299 -10.2173 22 7 3.7501 1.4673 -11.0970 23 14 5.2619 3.7672 -10.7804 24 1 4.3890 4.9276 -11.0912 25 1 6.2125 4.1378 -9.7013 26 1 6.0207 3.3788 -11.9965 27 7 3.9484 1.1149 -6.0281 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.6557 1.1576 2.0718 36 1 5.1966 1.0779 1.1844 37 1 5.0205 3.1878 2.4757 38 1 5.0796 1.2235 -3.6177 39 1 1.2910 1.1461 -4.1776 40 1 0.7547 1.0511 -6.7443 41 1 2.0940 1.0673 -8.9003 42 1 3.5580 0.0744 -8.7022 43 1 3.2042 0.7207 -10.8045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444507079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:10 Heat of formation + Delta-G solvation = -100.727270 kcal Electronic energy + Delta-G solvation = -30387.885526 eV Core-core repulsion = 25719.638401 eV Total energy + Delta-G solvation = -4668.247126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.87878 -47.91700 -42.60561 -41.75324 -39.76861 -37.95976 -36.40787 -35.53701 -34.19452 -32.77128 -31.11001 -31.05859 -28.52769 -27.41769 -26.39713 -25.02226 -23.88556 -22.84168 -22.51804 -21.57591 -20.77893 -19.29106 -18.99640 -18.78850 -18.28712 -18.24149 -17.86942 -17.39154 -17.06256 -16.79833 -16.43378 -16.10203 -15.77172 -15.66668 -15.21182 -15.13808 -14.98578 -14.87230 -14.31391 -14.27705 -14.17011 -13.97273 -13.82213 -13.63802 -13.39455 -13.28047 -13.07672 -12.91292 -12.62370 -12.45387 -12.33178 -12.18779 -12.05442 -11.99733 -11.70190 -11.54009 -11.03652 -10.70503 -10.53318 -10.01742 -9.89914 -9.30242 -8.80044 -6.57518 -0.02584 0.74929 1.03505 1.49429 1.56996 1.63811 1.65039 1.77742 2.17263 2.30532 2.46926 2.91744 2.99521 3.00331 3.39712 3.57385 3.79613 3.81787 4.04492 4.09090 4.12760 4.34817 4.45840 4.47324 4.51023 4.55111 4.60192 4.71857 4.76350 4.79698 4.88510 5.03629 5.06946 5.26648 5.36159 5.47490 5.51690 5.68978 5.72792 5.88610 5.93328 6.24356 6.38921 6.40989 6.67780 6.86167 7.17541 8.57165 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.002505 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.610846 B =11174.221251 C =12341.252823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.090 3.910 4 N -0.575 5.575 5 C 0.058 3.942 6 C 0.233 3.767 7 F -0.225 7.225 8 F -0.214 7.214 9 C 0.519 3.481 10 O -0.527 6.527 11 C 0.513 3.487 12 O -0.487 6.487 13 N -0.603 5.603 14 C 0.262 3.738 15 C -0.281 4.281 16 C 0.059 3.941 17 N -0.340 5.340 18 C 0.259 3.741 19 C -0.623 4.623 20 H 0.043 0.957 21 C -0.017 4.017 22 N -0.923 5.923 23 Si 1.120 2.880 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.275 1.275 27 N -0.343 5.343 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.425 0.575 39 H 0.181 0.819 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.018 0.982 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -1.200 31.436 31.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.031 4.031 4 N -0.307 5.307 5 C -0.064 4.064 6 C 0.179 3.821 7 F -0.207 7.207 8 F -0.196 7.196 9 C 0.301 3.699 10 O -0.403 6.403 11 C 0.294 3.706 12 O -0.359 6.359 13 N -0.252 5.252 14 C 0.007 3.993 15 C -0.312 4.312 16 C -0.089 4.089 17 N -0.122 5.122 18 C 0.139 3.861 19 C -0.661 4.661 20 H 0.062 0.938 21 C -0.217 4.217 22 N -0.559 5.559 23 Si 0.941 3.059 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.200 1.200 27 N -0.174 5.174 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.175 0.825 36 H 0.140 0.860 37 H 0.186 0.814 38 H 0.263 0.737 39 H 0.198 0.802 40 H 0.224 0.776 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.544 -0.550 29.341 29.560 hybrid contribution -0.824 -0.790 1.140 1.613 sum -4.368 -1.340 30.481 30.822 Atomic orbital electron populations 1.21611 0.94058 1.02149 1.02290 1.21767 0.97277 0.95655 1.01738 1.22479 0.75762 0.98954 1.05858 1.47769 1.08956 1.68876 1.05147 1.23184 1.02089 0.94307 0.86855 1.23113 0.77817 0.89581 0.91582 1.92996 1.77112 1.87514 1.63068 1.92966 1.46438 1.83402 1.96777 1.19595 0.86927 0.78381 0.85043 1.90789 1.13791 1.48827 1.86913 1.20305 0.87793 0.77836 0.84651 1.90611 1.13067 1.45984 1.86281 1.42165 1.11398 1.70104 1.01581 1.19332 0.92022 1.02144 0.85757 1.21771 0.93532 1.19300 0.96564 1.23269 0.92779 1.00390 0.92505 1.48635 1.02900 1.53870 1.06750 1.19459 0.98519 0.97381 0.70692 1.22311 1.36106 1.12012 0.95681 0.93827 1.27226 0.98134 1.03700 0.92647 1.70916 1.33688 1.14193 1.37083 0.82865 0.75013 0.72301 0.75680 1.19201 1.20822 1.19982 1.77341 1.14073 1.29659 0.96353 0.91129 0.93294 0.92303 0.93935 0.90532 0.87642 0.88522 0.82501 0.86002 0.81425 0.73675 0.80189 0.77611 0.92366 0.96466 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.13 -1.79 5.77 30.59 0.18 -1.61 16 3 C 0.09 1.37 4.71 86.38 0.41 1.78 16 4 N -0.58 -9.83 2.41 -823.51 -1.98 -11.81 16 5 C 0.06 0.53 5.70 86.38 0.49 1.02 16 6 C 0.23 2.52 5.60 71.98 0.40 2.92 16 7 F -0.23 -4.82 16.55 44.97 0.74 -4.08 16 8 F -0.21 -3.12 16.30 44.97 0.73 -2.39 16 9 C 0.52 12.81 7.24 87.24 0.63 13.44 16 10 O -0.53 -14.90 15.73 -3.29 -0.05 -14.95 16 11 C 0.51 14.77 7.63 87.23 0.67 15.43 16 12 O -0.49 -13.88 9.00 -3.35 -0.03 -13.91 16 13 N -0.60 -20.11 5.43 -308.90 -1.68 -21.79 16 14 C 0.26 10.50 8.10 133.40 1.08 11.58 16 15 C -0.28 -10.27 9.60 22.11 0.21 -10.06 16 16 C 0.06 2.20 11.43 83.51 0.95 3.16 16 17 N -0.34 -15.84 3.67 -351.84 -1.29 -17.13 16 18 C 0.26 13.25 5.57 85.63 0.48 13.73 16 19 C -0.62 -35.73 9.24 25.60 0.24 -35.50 16 20 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 21 C -0.02 -0.97 5.46 84.66 0.46 -0.50 16 22 N -0.92 -54.01 13.65 21.45 0.29 -53.72 16 23 Si 1.12 50.46 29.90 68.60 2.05 52.51 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 N -0.34 -16.34 12.42 -54.54 -0.68 -17.01 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.84 7.07 -2.39 -0.02 0.82 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.10 7.34 -2.39 -0.02 1.09 16 34 H 0.10 1.99 5.35 -2.52 -0.01 1.97 16 35 H 0.16 0.11 8.08 -2.39 -0.02 0.09 16 36 H 0.12 1.15 7.35 -2.38 -0.02 1.13 16 37 H 0.17 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.43 13.54 8.30 -92.71 -0.77 12.77 16 39 H 0.18 5.88 5.91 -2.91 -0.02 5.86 16 40 H 0.21 5.88 8.06 -2.91 -0.02 5.86 16 41 H 0.06 2.82 7.94 -2.39 -0.02 2.80 16 42 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 43 H 0.26 15.10 7.22 -92.71 -0.67 14.43 16 Total: -1.00 -75.57 371.50 5.42 -70.14 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.40 Total: 19.85 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.91 Total: 14.28 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.34 Total: -121.46 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.08 Total: -28.86 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 1.48 Total: -6.47 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.05 Total: 52.51 kcal Total: -75.57 5.42 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444507079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.585 kcal (2) G-P(sol) polarization free energy of solvation -75.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds