Wall clock time and date at job start Wed Apr 1 2020 03:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46892 * 30.97164 * 3 2 1 5 5 C 1.36941 * 119.99882 * 272.38681 * 4 3 2 6 6 H 1.07993 * 120.00012 * 322.13451 * 5 4 3 7 7 C 1.38814 * 119.99654 * 142.13240 * 5 4 3 8 8 N 1.31621 * 119.99940 * 157.05761 * 7 5 4 9 9 Si 1.86797 * 119.99988 * 337.06440 * 7 5 4 10 10 H 1.48501 * 109.47376 * 95.74621 * 9 7 5 11 11 H 1.48507 * 109.46729 * 215.74165 * 9 7 5 12 12 H 1.48498 * 109.47298 * 335.74093 * 9 7 5 13 13 C 1.46501 * 119.99989 * 92.39075 * 4 3 2 14 14 C 1.53006 * 109.46821 * 89.99894 * 13 4 3 15 15 H 1.09000 * 109.47578 * 60.00039 * 14 13 4 16 16 O 1.42899 * 109.47261 * 299.99823 * 14 13 4 17 17 C 1.53005 * 109.46851 * 179.97438 * 14 13 4 18 18 O 1.42898 * 109.46913 * 184.99924 * 17 14 13 19 19 C 1.35974 * 116.99955 * 180.02562 * 18 17 14 20 20 C 1.38746 * 119.98361 * 359.97438 * 19 18 17 21 21 C 1.38076 * 120.02960 * 179.70291 * 20 19 18 22 22 C 1.38845 * 119.96672 * 0.27265 * 21 20 19 23 23 C 1.38842 * 119.96626 * 0.02562 * 22 21 20 24 24 C 1.38074 * 120.01638 * 359.97438 * 23 22 21 25 25 C 1.50673 * 119.84287 * 179.97438 * 23 22 21 26 26 C 1.52901 * 109.54180 * 326.06677 * 25 23 22 27 27 C 1.50490 * 109.91111 * 48.64231 * 26 25 23 28 28 O 1.21290 * 119.62490 * 144.76720 * 27 26 25 29 29 N 1.34567 * 120.75766 * 324.74786 * 27 26 25 30 30 H 4.40633 * 5.51476 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.46947 * 270.97390 * 3 2 1 32 32 H 1.08999 * 109.46867 * 150.96904 * 3 2 1 33 33 H 0.97000 * 120.00039 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47350 * 330.00014 * 13 4 3 35 35 H 1.09004 * 109.47193 * 209.99562 * 13 4 3 36 36 H 0.96700 * 114.00062 * 300.00493 * 16 14 13 37 37 H 1.09001 * 109.47195 * 65.00045 * 17 14 13 38 38 H 1.08991 * 109.47270 * 304.99865 * 17 14 13 39 39 H 1.07998 * 119.98404 * 359.97438 * 20 19 18 40 40 H 1.07999 * 120.01184 * 180.29191 * 21 20 19 41 41 H 1.08001 * 120.00390 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.46121 * 206.04574 * 25 23 22 43 43 H 1.09001 * 109.44869 * 86.08114 * 25 23 22 44 44 H 1.09001 * 109.39635 * 288.50647 * 26 25 23 45 45 H 1.09001 * 109.39719 * 168.77981 * 26 25 23 46 46 H 0.96996 * 119.78251 * 180.82709 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1834 -0.7108 5 6 3.3170 -2.3607 -0.0355 6 1 3.7018 -2.3505 0.9735 7 6 3.0070 -3.5673 -0.6480 8 7 3.5711 -4.6810 -0.2311 9 14 1.7894 -3.6102 -2.0639 10 1 2.5268 -3.5701 -3.3523 11 1 0.9888 -4.8588 -1.9905 12 1 0.8847 -2.4361 -1.9746 13 6 3.4288 -1.1080 -2.1440 14 6 4.8899 -0.7002 -2.3441 15 1 5.5408 -1.4400 -1.8781 16 8 5.1144 0.5771 -1.7439 17 6 5.1972 -0.6220 -3.8409 18 8 6.5885 -0.3555 -4.0283 19 6 7.0305 -0.2541 -5.3102 20 6 6.1417 -0.4087 -6.3643 21 6 6.5883 -0.2998 -7.6663 22 6 7.9286 -0.0411 -7.9205 23 6 8.8184 0.1074 -6.8651 24 6 8.3707 -0.0017 -5.5635 25 6 10.2724 0.3875 -7.1441 26 6 10.6938 -0.3274 -8.4283 27 6 9.6956 -0.0509 -9.5200 28 8 10.0765 0.0634 -10.6658 29 7 8.3851 0.0707 -9.2396 30 1 -1.0498 -0.0004 0.0000 31 1 3.0093 -0.0166 1.0275 32 1 3.0089 0.8994 -0.4987 33 1 3.3542 -5.5241 -0.6588 34 1 2.7780 -0.3681 -2.6100 35 1 3.2576 -2.0823 -2.6019 36 1 4.5677 1.2855 -2.1104 37 1 4.6101 0.1786 -4.2910 38 1 4.9419 -1.5700 -4.3142 39 1 5.0993 -0.6100 -6.1663 40 1 5.8953 -0.4156 -8.4866 41 1 9.0630 0.1142 -4.7428 42 1 10.8778 0.0270 -6.3123 43 1 10.4191 1.4613 -7.2614 44 1 10.7424 -1.4009 -8.2456 45 1 11.6760 0.0309 -8.7365 46 1 7.7525 0.2370 -9.9559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491309215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:26 Heat of formation + Delta-G solvation = -18.267045 kcal Electronic energy + Delta-G solvation = -29124.437537 eV Core-core repulsion = 24981.702933 eV Total energy + Delta-G solvation = -4142.734604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.28761 -39.84209 -38.31920 -37.31663 -35.37309 -34.72194 -34.31301 -32.61803 -31.51199 -30.74467 -30.06604 -28.77226 -26.76246 -25.81599 -24.92616 -23.21152 -22.79760 -21.96719 -21.23520 -19.53093 -18.30541 -17.76857 -17.54512 -17.44958 -17.00952 -16.46941 -16.22909 -15.84442 -15.47565 -15.23519 -15.00639 -14.66557 -14.40023 -14.02431 -13.96272 -13.87312 -13.66832 -13.39673 -13.13089 -13.03196 -12.98826 -12.62964 -12.36609 -12.14342 -11.82629 -11.76956 -11.48831 -11.39663 -11.14643 -10.80147 -10.50477 -10.38267 -10.31463 -10.18337 -9.80407 -9.79361 -9.66119 -9.36368 -9.16631 -8.64816 -7.85306 -7.09073 -6.14585 -3.58174 0.92715 1.02522 2.22958 2.72793 3.07537 3.12977 3.35156 3.41918 3.46505 3.48661 3.55050 4.03674 4.26433 4.36672 4.37922 4.54242 4.69133 4.74223 4.79396 4.85095 4.89855 5.07073 5.09228 5.11613 5.25093 5.31683 5.32144 5.38546 5.43340 5.52899 5.61889 5.67879 5.72654 5.80137 5.89557 6.10890 6.17330 6.23090 6.30213 6.45075 6.49143 6.58714 6.67514 6.84248 7.35208 7.66495 7.86143 8.02206 8.22628 8.35698 8.79419 9.52841 9.89786 11.00260 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002220 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.357603 B =12607.463819 C =12936.553238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.168 4.168 3 C 0.244 3.756 4 N -0.582 5.582 5 C -0.272 4.272 6 H 0.085 0.915 7 C 0.041 3.959 8 N -0.891 5.891 9 Si 0.867 3.133 10 H -0.286 1.286 11 H -0.298 1.298 12 H -0.263 1.263 13 C 0.113 3.887 14 C 0.093 3.907 15 H 0.118 0.882 16 O -0.543 6.543 17 C 0.025 3.975 18 O -0.298 6.298 19 C 0.124 3.876 20 C -0.183 4.183 21 C -0.106 4.106 22 C 0.108 3.892 23 C -0.082 4.082 24 C -0.119 4.119 25 C -0.077 4.077 26 C -0.138 4.138 27 C 0.521 3.479 28 O -0.537 6.537 29 N -0.660 5.660 30 H 0.202 0.798 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.265 0.735 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.359 0.641 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 11.471 -14.375 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.170 4.170 3 C 0.118 3.882 4 N -0.302 5.302 5 C -0.401 4.401 6 H 0.102 0.898 7 C -0.161 4.161 8 N -0.530 5.530 9 Si 0.697 3.303 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.188 1.188 13 C -0.013 4.013 14 C 0.031 3.969 15 H 0.136 0.864 16 O -0.346 6.346 17 C -0.051 4.051 18 O -0.210 6.210 19 C 0.077 3.923 20 C -0.203 4.203 21 C -0.126 4.126 22 C 0.013 3.987 23 C -0.085 4.085 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.178 4.178 27 C 0.309 3.691 28 O -0.413 6.413 29 N -0.305 5.305 30 H 0.219 0.781 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.204 0.796 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.069 10.952 -14.334 20.190 hybrid contribution -2.220 -0.153 -1.681 2.789 sum 6.849 10.799 -16.014 20.493 Atomic orbital electron populations 1.24701 0.95824 1.03615 1.03760 1.25265 0.96328 0.97599 0.97832 1.18233 0.81250 0.90367 0.98327 1.43919 1.72926 1.08831 1.04493 1.18827 1.38544 0.81590 1.01112 0.89765 1.25498 0.97312 0.95281 0.98026 1.69864 1.41259 0.98879 1.43040 0.87087 0.83605 0.77549 0.82052 1.21462 1.22546 1.18787 1.21747 0.92117 1.00276 0.87203 1.22849 0.99964 0.86575 0.87488 0.86439 1.86689 1.66021 1.17651 1.64232 1.23851 0.79649 1.00819 1.00765 1.86242 1.26943 1.85493 1.22347 1.19064 0.93134 0.95971 0.84147 1.21155 1.00370 1.06695 0.92052 1.20527 0.93576 1.01510 0.97013 1.17458 0.93416 1.04454 0.83362 1.19243 0.95285 1.02488 0.91466 1.20109 0.93479 1.04360 0.95901 1.20444 0.91975 1.01506 0.97493 1.21689 0.98752 1.03908 0.93423 1.20751 0.82928 0.75093 0.90284 1.90776 1.78723 1.49459 1.22364 1.43539 1.08861 1.70319 1.07773 0.78068 0.90349 0.91067 0.92472 0.93525 0.91720 0.79557 0.92078 0.91217 0.84776 0.85256 0.84263 0.88645 0.89637 0.87734 0.87276 0.75356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.70 19.25 29.55 0.57 -4.13 16 2 C -0.17 -3.27 13.66 -37.12 -0.51 -3.78 16 3 C 0.24 4.59 5.86 -6.83 -0.04 4.55 16 4 N -0.58 -12.73 1.95 -176.57 -0.35 -13.07 16 5 C -0.27 -7.19 9.90 -15.06 -0.15 -7.34 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.04 1.11 5.29 -17.43 -0.09 1.02 16 8 N -0.89 -26.01 13.97 55.49 0.78 -25.24 16 9 Si 0.87 20.95 25.09 -169.99 -4.27 16.69 16 10 H -0.29 -6.49 6.68 56.52 0.38 -6.11 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.11 2.14 4.20 -4.04 -0.02 2.12 16 14 C 0.09 1.56 3.52 -26.73 -0.09 1.46 16 15 H 0.12 2.35 8.14 -51.93 -0.42 1.93 16 16 O -0.54 -8.55 12.07 -40.06 -0.48 -9.04 16 17 C 0.03 0.35 4.37 37.16 0.16 0.51 16 18 O -0.30 -4.26 10.10 -24.49 -0.25 -4.51 16 19 C 0.12 1.50 6.69 -39.22 -0.26 1.24 16 20 C -0.18 -1.95 9.03 -39.45 -0.36 -2.30 16 21 C -0.11 -0.97 9.92 -39.42 -0.39 -1.36 16 22 C 0.11 1.01 6.51 -83.66 -0.54 0.46 16 23 C -0.08 -0.75 5.66 -104.47 -0.59 -1.34 16 24 C -0.12 -1.25 9.63 -39.47 -0.38 -1.63 16 25 C -0.08 -0.51 5.99 -27.95 -0.17 -0.67 16 26 C -0.14 -0.96 6.07 -28.04 -0.17 -1.13 16 27 C 0.52 5.19 7.72 -11.18 -0.09 5.10 16 28 O -0.54 -7.22 17.91 5.55 0.10 -7.12 16 29 N -0.66 -5.79 5.37 -9.96 -0.05 -5.85 16 30 H 0.20 2.87 7.80 -54.10 -0.42 2.45 16 31 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 32 H 0.07 1.12 6.93 -51.93 -0.36 0.76 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.05 0.76 8.07 -51.93 -0.42 0.35 16 35 H 0.07 1.36 3.36 -51.93 -0.17 1.18 16 36 H 0.36 4.18 8.79 45.56 0.40 4.58 16 37 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 39 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.10 0.47 8.06 -51.92 -0.42 0.06 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.41 3.00 8.84 -40.82 -0.36 2.64 16 LS Contribution 387.20 15.07 5.83 5.83 Total: -1.00 -33.75 387.20 -7.22 -40.97 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.42 Total: 8.55 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.12 Total: -7.22 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.38 Total: -44.16 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.63 Total: -20.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.27 Total: 16.69 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.75 -7.22 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491309215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.699 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds