Wall clock time and date at job start Wed Apr 1 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46892 * 30.97164 * 3 2 1 5 5 C 1.36941 * 119.99882 * 272.38681 * 4 3 2 6 6 H 1.07993 * 120.00012 * 322.13451 * 5 4 3 7 7 C 1.38814 * 119.99654 * 142.13240 * 5 4 3 8 8 N 1.31621 * 119.99940 * 157.05761 * 7 5 4 9 9 Si 1.86797 * 119.99988 * 337.06440 * 7 5 4 10 10 H 1.48501 * 109.47376 * 95.74621 * 9 7 5 11 11 H 1.48507 * 109.46729 * 215.74165 * 9 7 5 12 12 H 1.48498 * 109.47298 * 335.74093 * 9 7 5 13 13 C 1.46501 * 119.99989 * 92.39075 * 4 3 2 14 14 C 1.53006 * 109.46821 * 89.99894 * 13 4 3 15 15 H 1.09000 * 109.47578 * 60.00039 * 14 13 4 16 16 O 1.42899 * 109.47261 * 299.99823 * 14 13 4 17 17 C 1.53005 * 109.46851 * 179.97438 * 14 13 4 18 18 O 1.42898 * 109.46913 * 184.99924 * 17 14 13 19 19 C 1.35974 * 116.99955 * 180.02562 * 18 17 14 20 20 C 1.38746 * 119.98361 * 359.97438 * 19 18 17 21 21 C 1.38076 * 120.02960 * 179.70291 * 20 19 18 22 22 C 1.38845 * 119.96672 * 0.27265 * 21 20 19 23 23 C 1.38842 * 119.96626 * 0.02562 * 22 21 20 24 24 C 1.38074 * 120.01638 * 359.97438 * 23 22 21 25 25 C 1.50673 * 119.84287 * 179.97438 * 23 22 21 26 26 C 1.52901 * 109.54180 * 326.06677 * 25 23 22 27 27 C 1.50490 * 109.91111 * 48.64231 * 26 25 23 28 28 O 1.21290 * 119.62490 * 144.76720 * 27 26 25 29 29 N 1.34567 * 120.75766 * 324.74786 * 27 26 25 30 30 H 4.40633 * 5.51476 * 179.97438 * 4 1 2 31 31 H 1.08996 * 109.46947 * 270.97390 * 3 2 1 32 32 H 1.08999 * 109.46867 * 150.96904 * 3 2 1 33 33 H 0.97000 * 120.00039 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47350 * 330.00014 * 13 4 3 35 35 H 1.09004 * 109.47193 * 209.99562 * 13 4 3 36 36 H 0.96700 * 114.00062 * 300.00493 * 16 14 13 37 37 H 1.09001 * 109.47195 * 65.00045 * 17 14 13 38 38 H 1.08991 * 109.47270 * 304.99865 * 17 14 13 39 39 H 1.07998 * 119.98404 * 359.97438 * 20 19 18 40 40 H 1.07999 * 120.01184 * 180.29191 * 21 20 19 41 41 H 1.08001 * 120.00390 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.46121 * 206.04574 * 25 23 22 43 43 H 1.09001 * 109.44869 * 86.08114 * 25 23 22 44 44 H 1.09001 * 109.39635 * 288.50647 * 26 25 23 45 45 H 1.09001 * 109.39719 * 168.77981 * 26 25 23 46 46 H 0.96996 * 119.78251 * 180.82709 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1834 -0.7108 5 6 3.3170 -2.3607 -0.0355 6 1 3.7018 -2.3505 0.9735 7 6 3.0070 -3.5673 -0.6480 8 7 3.5711 -4.6810 -0.2311 9 14 1.7894 -3.6102 -2.0639 10 1 2.5268 -3.5701 -3.3523 11 1 0.9888 -4.8588 -1.9905 12 1 0.8847 -2.4361 -1.9746 13 6 3.4288 -1.1080 -2.1440 14 6 4.8899 -0.7002 -2.3441 15 1 5.5408 -1.4400 -1.8781 16 8 5.1144 0.5771 -1.7439 17 6 5.1972 -0.6220 -3.8409 18 8 6.5885 -0.3555 -4.0283 19 6 7.0305 -0.2541 -5.3102 20 6 6.1417 -0.4087 -6.3643 21 6 6.5883 -0.2998 -7.6663 22 6 7.9286 -0.0411 -7.9205 23 6 8.8184 0.1074 -6.8651 24 6 8.3707 -0.0017 -5.5635 25 6 10.2724 0.3875 -7.1441 26 6 10.6938 -0.3274 -8.4283 27 6 9.6956 -0.0509 -9.5200 28 8 10.0765 0.0634 -10.6658 29 7 8.3851 0.0707 -9.2396 30 1 -1.0498 -0.0004 0.0000 31 1 3.0093 -0.0166 1.0275 32 1 3.0089 0.8994 -0.4987 33 1 3.3542 -5.5241 -0.6588 34 1 2.7780 -0.3681 -2.6100 35 1 3.2576 -2.0823 -2.6019 36 1 4.5677 1.2855 -2.1104 37 1 4.6101 0.1786 -4.2910 38 1 4.9419 -1.5700 -4.3142 39 1 5.0993 -0.6100 -6.1663 40 1 5.8953 -0.4156 -8.4866 41 1 9.0630 0.1142 -4.7428 42 1 10.8778 0.0270 -6.3123 43 1 10.4191 1.4613 -7.2614 44 1 10.7424 -1.4009 -8.2456 45 1 11.6760 0.0309 -8.7365 46 1 7.7525 0.2370 -9.9559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491309215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:25 Heat of formation + Delta-G solvation = -42.278241 kcal Electronic energy + Delta-G solvation = -29125.478741 eV Core-core repulsion = 24981.702933 eV Total energy + Delta-G solvation = -4143.775807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03125 -40.76142 -39.41196 -38.51520 -36.81625 -35.58455 -34.93642 -34.33710 -33.21951 -31.80082 -31.01329 -29.65765 -28.27002 -27.30450 -25.63301 -24.14825 -23.70122 -23.27698 -22.65115 -20.33953 -19.17461 -19.03094 -18.92518 -18.47627 -18.00624 -17.62977 -17.36013 -17.09529 -16.78482 -16.23754 -15.94677 -15.91597 -15.39566 -15.36786 -15.10447 -14.88048 -14.65228 -14.47104 -14.32352 -14.24224 -14.08461 -13.79678 -13.43257 -13.36406 -13.09758 -12.83349 -12.66358 -12.47296 -12.36300 -12.07475 -12.00592 -11.76843 -11.61965 -11.31198 -11.16610 -11.08398 -11.00955 -10.81159 -10.58217 -9.88181 -8.89541 -8.65850 -8.23666 -5.63891 0.17208 0.26768 1.22510 1.39817 1.47013 1.50819 1.92693 2.03828 2.09961 2.19976 2.37237 2.70993 3.02525 3.36871 3.46672 3.55450 3.66598 3.71320 3.82595 3.90119 3.93625 4.04480 4.12752 4.17025 4.28518 4.30420 4.37596 4.38744 4.41063 4.70354 4.78057 4.79457 4.86969 4.91340 4.93824 5.00022 5.08784 5.17601 5.19124 5.29176 5.34585 5.57789 5.74126 5.89736 6.10804 6.15249 6.45715 6.86398 6.94152 6.94973 6.99752 7.54955 7.95463 8.95877 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002220 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.357603 B =12607.463819 C =12936.553238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.211 4.211 3 C 0.243 3.757 4 N -0.595 5.595 5 C -0.260 4.260 6 H 0.042 0.958 7 C -0.015 4.015 8 N -0.943 5.943 9 Si 0.934 3.066 10 H -0.262 1.262 11 H -0.312 1.312 12 H -0.257 1.257 13 C 0.110 3.890 14 C 0.107 3.893 15 H 0.073 0.927 16 O -0.554 6.554 17 C 0.034 3.966 18 O -0.320 6.320 19 C 0.099 3.901 20 C -0.189 4.189 21 C -0.104 4.104 22 C 0.104 3.896 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.074 4.074 26 C -0.134 4.134 27 C 0.517 3.483 28 O -0.577 6.577 29 N -0.654 5.654 30 H 0.237 0.763 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.381 0.619 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 13.437 -16.615 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.213 4.213 3 C 0.119 3.881 4 N -0.315 5.315 5 C -0.390 4.390 6 H 0.059 0.941 7 C -0.212 4.212 8 N -0.587 5.587 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.240 1.240 12 H -0.181 1.181 13 C -0.015 4.015 14 C 0.045 3.955 15 H 0.091 0.909 16 O -0.360 6.360 17 C -0.042 4.042 18 O -0.234 6.234 19 C 0.053 3.947 20 C -0.208 4.208 21 C -0.124 4.124 22 C 0.009 3.991 23 C -0.084 4.084 24 C -0.146 4.146 25 C -0.111 4.111 26 C -0.173 4.173 27 C 0.307 3.693 28 O -0.457 6.457 29 N -0.298 5.298 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.229 0.771 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.133 0.867 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.142 0.858 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.210 12.980 -16.591 22.608 hybrid contribution -1.919 -0.633 -0.922 2.221 sum 6.291 12.347 -17.513 22.332 Atomic orbital electron populations 1.25566 0.96811 1.01682 1.01856 1.25415 0.96971 0.99350 0.99602 1.18267 0.81584 0.90322 0.97927 1.43963 1.73813 1.08067 1.05644 1.18646 1.36851 0.83688 0.99767 0.94074 1.26080 0.99018 0.94808 1.01339 1.70000 1.43420 0.99566 1.45670 0.86012 0.80962 0.76708 0.80155 1.18869 1.24049 1.18142 1.21831 0.94082 1.00343 0.85280 1.22318 0.97529 0.86160 0.89487 0.90931 1.86645 1.66756 1.17803 1.64801 1.23635 0.80265 1.02157 0.98150 1.86169 1.27046 1.86212 1.23971 1.19321 0.94112 0.97709 0.83592 1.21293 1.00685 1.06686 0.92138 1.20773 0.93937 1.00461 0.97216 1.17610 0.93733 1.04273 0.83500 1.19503 0.96635 1.01408 0.90832 1.20269 0.93177 1.04480 0.96701 1.20522 0.90557 1.02125 0.97899 1.21744 0.98522 1.04646 0.92429 1.21306 0.83500 0.74135 0.90369 1.90760 1.79334 1.51482 1.24109 1.43519 1.08886 1.69571 1.07843 0.74693 0.91544 0.87580 0.92710 0.89966 0.93648 0.77093 0.88810 0.91229 0.83833 0.82975 0.83734 0.86671 0.88726 0.86754 0.85792 0.74706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -7.95 19.25 74.32 1.43 -6.52 16 2 C -0.21 -7.82 13.66 31.13 0.43 -7.39 16 3 C 0.24 8.94 5.86 84.57 0.50 9.43 16 4 N -0.59 -25.81 1.95 -712.54 -1.39 -27.20 16 5 C -0.26 -14.18 9.90 84.03 0.83 -13.34 16 6 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 7 C -0.02 -0.86 5.29 84.86 0.45 -0.41 16 8 N -0.94 -57.44 13.97 21.65 0.30 -57.14 16 9 Si 0.93 43.56 25.09 68.60 1.72 45.28 16 10 H -0.26 -11.06 6.68 99.48 0.66 -10.39 16 11 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.11 3.98 4.20 86.38 0.36 4.34 16 14 C 0.11 3.50 3.52 30.60 0.11 3.61 16 15 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 16 O -0.55 -16.60 12.07 -144.36 -1.74 -18.35 16 17 C 0.03 0.86 4.37 71.98 0.31 1.17 16 18 O -0.32 -8.86 10.10 -88.64 -0.90 -9.75 16 19 C 0.10 2.25 6.69 22.50 0.15 2.40 16 20 C -0.19 -3.58 9.03 22.35 0.20 -3.38 16 21 C -0.10 -1.64 9.92 22.38 0.22 -1.42 16 22 C 0.10 1.71 6.51 38.12 0.25 1.95 16 23 C -0.08 -1.31 5.66 -19.77 -0.11 -1.43 16 24 C -0.13 -2.48 9.63 22.34 0.22 -2.26 16 25 C -0.07 -0.78 5.99 29.81 0.18 -0.60 16 26 C -0.13 -1.55 6.07 29.75 0.18 -1.37 16 27 C 0.52 9.50 7.72 87.62 0.68 10.18 16 28 O -0.58 -15.09 17.91 -3.06 -0.05 -15.14 16 29 N -0.65 -10.28 5.37 -303.93 -1.63 -11.91 16 30 H 0.24 5.71 7.80 -4.43 -0.03 5.68 16 31 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 32 H 0.11 3.07 6.93 -2.39 -0.02 3.05 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 35 H 0.05 1.83 3.36 -2.39 -0.01 1.82 16 36 H 0.38 7.66 8.79 -74.06 -0.65 7.01 16 37 H 0.09 1.75 7.66 -2.39 -0.02 1.73 16 38 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 39 H 0.14 2.37 6.29 -2.91 -0.02 2.35 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.11 0.80 8.06 -2.38 -0.02 0.78 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.41 5.39 8.84 -92.71 -0.82 4.57 16 Total: -1.00 -76.40 387.20 2.20 -74.20 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.48 Total: 25.05 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 6.38 Total: -5.04 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -2.72 Total: -96.25 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -2.69 Total: -43.24 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.72 Total: 45.28 kcal Total: -76.40 2.20 -74.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491309215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.920 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds