Wall clock time and date at job start Wed Apr 1 2020 03:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47081 * 211.51029 * 3 2 1 5 5 C 1.36935 * 120.00028 * 269.99754 * 4 3 2 6 6 H 1.07998 * 120.00331 * 188.81742 * 5 4 3 7 7 C 1.38814 * 119.99764 * 8.82307 * 5 4 3 8 8 N 1.31623 * 119.99961 * 25.72518 * 7 5 4 9 9 Si 1.86800 * 119.99838 * 205.72511 * 7 5 4 10 10 H 1.48497 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47132 * 120.00178 * 9 7 5 12 12 H 1.48502 * 109.46947 * 239.99775 * 9 7 5 13 13 C 1.46500 * 120.00166 * 89.99546 * 4 3 2 14 14 C 1.52996 * 109.47316 * 264.43518 * 13 4 3 15 15 H 1.09002 * 109.47008 * 304.99219 * 14 13 4 16 16 O 1.42893 * 109.47496 * 65.00002 * 14 13 4 17 17 C 1.53000 * 109.46973 * 185.00181 * 14 13 4 18 18 O 1.42904 * 109.47293 * 174.99958 * 17 14 13 19 19 C 1.35970 * 117.00293 * 179.97438 * 18 17 14 20 20 C 1.38744 * 119.98412 * 0.02562 * 19 18 17 21 21 C 1.38068 * 120.03157 * 180.02562 * 20 19 18 22 22 C 1.38850 * 119.96952 * 359.97438 * 21 20 19 23 23 C 1.38844 * 119.95806 * 359.96391 * 22 21 20 24 24 C 1.38070 * 120.02403 * 0.05410 * 23 22 21 25 25 C 1.50666 * 119.83809 * 180.02562 * 23 22 21 26 26 C 1.52905 * 109.53313 * 326.01662 * 25 23 22 27 27 C 1.50506 * 109.90129 * 48.66802 * 26 25 23 28 28 O 1.21289 * 119.62085 * 144.78368 * 27 26 25 29 29 N 1.34561 * 120.75980 * 324.81179 * 27 26 25 30 30 H 4.40644 * 5.51454 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47342 * 91.50763 * 3 2 1 32 32 H 1.09008 * 109.46948 * 331.50560 * 3 2 1 33 33 H 0.97003 * 119.99831 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47083 * 144.42943 * 13 4 3 35 35 H 1.09007 * 109.47012 * 24.43475 * 13 4 3 36 36 H 0.96699 * 113.99893 * 59.99500 * 16 14 13 37 37 H 1.09000 * 109.47680 * 54.99443 * 17 14 13 38 38 H 1.08997 * 109.47450 * 294.99433 * 17 14 13 39 39 H 1.07998 * 119.98420 * 359.97438 * 20 19 18 40 40 H 1.08003 * 120.01945 * 179.70946 * 21 20 19 41 41 H 1.08004 * 120.00721 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.46296 * 86.03039 * 25 23 22 43 43 H 1.08996 * 109.46206 * 205.99687 * 25 23 22 44 44 H 1.08997 * 109.40219 * 168.79834 * 26 25 23 45 45 H 1.09002 * 109.40221 * 288.62918 * 26 25 23 46 46 H 0.97003 * 119.78383 * 180.74419 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.1785 0.7219 5 6 3.3615 2.3487 0.0483 6 1 3.8531 3.1715 0.5460 7 6 2.9604 2.4775 -1.2744 8 7 1.9626 1.7519 -1.7331 9 14 3.8367 3.6804 -2.4032 10 1 4.9149 4.3702 -1.6503 11 1 4.4264 2.9436 -3.5498 12 1 2.8651 4.6842 -2.9069 13 6 3.3779 1.1043 2.1645 14 6 2.1494 1.6199 2.9168 15 1 1.9048 2.6234 2.5686 16 8 1.0427 0.7488 2.6755 17 6 2.4495 1.6597 4.4166 18 8 1.3464 2.2495 5.1076 19 6 1.4524 2.3605 6.4586 20 6 2.5954 1.9110 7.1038 21 6 2.7038 2.0227 8.4757 22 6 1.6684 2.5858 9.2097 23 6 0.5254 3.0366 8.5630 24 6 0.4179 2.9240 7.1911 25 6 -0.5963 3.6478 9.3620 26 6 -0.6884 2.9585 10.7238 27 6 0.6758 2.8874 11.3554 28 8 0.7862 2.9993 12.5581 29 7 1.7746 2.7018 10.6011 30 1 -1.0502 -0.0004 0.0000 31 1 3.0093 0.0279 -1.0272 32 1 3.0097 -0.9024 0.4903 33 1 1.6825 1.8417 -2.6575 34 1 4.2431 1.7167 2.4186 35 1 3.5695 0.0693 2.4479 36 1 1.1904 -0.1632 2.9612 37 1 3.3471 2.2527 4.5920 38 1 2.6070 0.6453 4.7828 39 1 3.4005 1.4726 6.5327 40 1 3.5917 1.6684 8.9782 41 1 -0.4715 3.2744 6.6884 42 1 -0.4027 4.7108 9.5055 43 1 -1.5363 3.5191 8.8256 44 1 -1.3581 3.5243 11.3715 45 1 -1.0784 1.9491 10.5931 46 1 2.6459 2.6473 11.0241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491309216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:30 Heat of formation + Delta-G solvation = -10.632656 kcal Electronic energy + Delta-G solvation = -29109.636939 eV Core-core repulsion = 24967.233387 eV Total energy + Delta-G solvation = -4142.403552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28596 -39.81135 -38.22581 -37.09816 -35.23238 -34.67587 -34.31331 -31.60964 -31.37931 -30.61365 -29.70077 -28.60499 -26.23990 -25.71590 -24.92125 -23.22114 -22.81055 -21.99766 -20.75179 -19.49629 -18.29191 -17.67626 -17.49565 -17.31647 -16.60675 -16.22720 -16.11879 -15.88536 -15.23620 -15.09653 -14.74580 -14.45428 -14.26433 -14.01044 -13.92914 -13.63937 -13.45777 -13.44123 -13.11494 -12.92025 -12.66034 -12.45530 -12.15264 -11.74651 -11.54831 -11.40636 -11.34595 -11.13893 -10.92446 -10.69987 -10.40293 -10.34872 -10.25310 -10.18196 -10.04877 -9.60508 -9.16360 -8.71918 -8.64635 -8.25786 -7.84336 -7.09230 -5.82006 -3.18008 0.93096 1.02863 2.22684 2.72549 3.15324 3.34940 3.43715 3.45185 3.46955 4.03436 4.26285 4.29656 4.38710 4.53551 4.54554 4.69476 4.74068 4.81528 4.87390 4.90751 5.01542 5.11528 5.25991 5.27530 5.31771 5.37512 5.42776 5.54359 5.62512 5.73997 5.76562 5.82488 5.86911 5.95003 6.03818 6.11977 6.30937 6.36626 6.45584 6.65254 6.72087 6.84238 7.28541 7.39871 7.56519 7.66145 7.71493 8.19589 8.28916 9.06329 9.45986 9.72938 10.15592 11.19794 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.002001 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.354088 B =13987.140871 C =14290.827833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.088 4.088 3 C 0.271 3.729 4 N -0.576 5.576 5 C -0.269 4.269 6 H 0.078 0.922 7 C 0.005 3.995 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.292 1.292 13 C 0.125 3.875 14 C 0.084 3.916 15 H 0.105 0.895 16 O -0.528 6.528 17 C 0.027 3.973 18 O -0.299 6.299 19 C 0.125 3.875 20 C -0.184 4.184 21 C -0.106 4.106 22 C 0.106 3.894 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.078 4.078 26 C -0.137 4.137 27 C 0.521 3.479 28 O -0.537 6.537 29 N -0.660 5.660 30 H 0.183 0.817 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.254 0.746 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.354 0.646 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -1.567 20.469 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.091 4.091 3 C 0.146 3.854 4 N -0.295 5.295 5 C -0.398 4.398 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.521 5.521 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.220 1.220 13 C -0.003 4.003 14 C 0.021 3.979 15 H 0.123 0.877 16 O -0.330 6.330 17 C -0.049 4.049 18 O -0.211 6.211 19 C 0.078 3.922 20 C -0.203 4.203 21 C -0.126 4.126 22 C 0.012 3.988 23 C -0.084 4.084 24 C -0.140 4.140 25 C -0.115 4.115 26 C -0.177 4.177 27 C 0.309 3.691 28 O -0.413 6.413 29 N -0.305 5.305 30 H 0.200 0.800 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.199 0.801 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.087 -0.865 20.513 20.560 hybrid contribution 0.936 0.230 -0.274 1.002 sum -0.151 -0.635 20.239 20.250 Atomic orbital electron populations 1.23922 0.95060 1.05726 1.06304 1.23807 0.94801 0.95394 0.95085 1.17890 0.83471 0.86281 0.97791 1.44260 1.74636 1.09809 1.00817 1.19205 1.33113 0.93618 0.93852 0.90460 1.24833 0.96947 0.99088 0.98580 1.70229 1.23586 1.43027 1.15302 0.86322 0.79539 0.80363 0.81159 1.20360 1.21499 1.21963 1.21465 0.94609 0.98556 0.85686 1.23068 0.90736 0.96700 0.87381 0.87697 1.86848 1.39292 1.21583 1.85326 1.23957 0.88510 0.97144 0.95325 1.86288 1.43128 1.76646 1.15075 1.19092 0.93748 0.95462 0.83944 1.21135 0.98690 1.05731 0.94752 1.20521 0.98359 1.00198 0.93560 1.17454 0.96333 1.02623 0.82414 1.19239 0.95144 1.00884 0.93156 1.20126 0.99294 1.02950 0.91646 1.20447 0.97631 0.99960 0.93452 1.21691 0.93970 1.04505 0.97554 1.20753 0.87015 0.74679 0.86634 1.90776 1.87009 1.48977 1.14585 1.43532 1.10502 1.71054 1.05382 0.79992 0.88880 0.94934 0.93553 0.92571 0.93297 0.80100 0.91577 0.92304 0.84738 0.85277 0.84355 0.89625 0.88680 0.87284 0.87788 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.73 18.61 29.55 0.55 -6.18 16 2 C -0.09 -2.09 9.56 -37.12 -0.35 -2.45 16 3 C 0.27 6.12 5.50 -6.83 -0.04 6.08 16 4 N -0.58 -13.06 2.46 -176.57 -0.43 -13.50 16 5 C -0.27 -6.88 9.68 -15.06 -0.15 -7.03 16 6 H 0.08 1.93 7.95 -52.49 -0.42 1.52 16 7 C 0.01 0.14 4.87 -17.43 -0.08 0.05 16 8 N -0.88 -24.47 9.21 55.49 0.51 -23.95 16 9 Si 0.90 20.93 29.62 -169.99 -5.04 15.90 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.13 2.18 5.36 -4.04 -0.02 2.16 16 14 C 0.08 1.43 3.46 -26.73 -0.09 1.34 16 15 H 0.11 2.18 8.14 -51.93 -0.42 1.75 16 16 O -0.53 -9.78 10.59 -40.08 -0.42 -10.21 16 17 C 0.03 0.35 4.37 37.16 0.16 0.51 16 18 O -0.30 -4.32 10.10 -24.50 -0.25 -4.56 16 19 C 0.12 1.49 6.69 -39.22 -0.26 1.23 16 20 C -0.18 -1.84 9.03 -39.46 -0.36 -2.19 16 21 C -0.11 -0.92 9.92 -39.42 -0.39 -1.31 16 22 C 0.11 0.96 6.51 -83.66 -0.54 0.42 16 23 C -0.08 -0.74 5.66 -104.48 -0.59 -1.33 16 24 C -0.12 -1.28 9.62 -39.47 -0.38 -1.66 16 25 C -0.08 -0.52 6.00 -27.95 -0.17 -0.68 16 26 C -0.14 -0.94 6.08 -28.03 -0.17 -1.11 16 27 C 0.52 5.09 7.72 -11.18 -0.09 5.00 16 28 O -0.54 -7.12 17.91 5.55 0.10 -7.02 16 29 N -0.66 -5.63 5.37 -9.96 -0.05 -5.68 16 30 H 0.18 3.71 7.80 -54.08 -0.42 3.29 16 31 H 0.09 2.33 6.35 -51.93 -0.33 2.00 16 32 H 0.03 0.63 7.86 -51.92 -0.41 0.22 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.05 0.73 7.83 -51.93 -0.41 0.32 16 36 H 0.35 5.31 9.05 45.56 0.41 5.72 16 37 H 0.07 0.76 7.66 -51.93 -0.40 0.36 16 38 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 40 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.48 8.06 -51.93 -0.42 0.07 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.41 2.89 8.84 -40.82 -0.36 2.53 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -33.20 385.63 -8.31 -41.52 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.57 Total: 8.85 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.97 Total: -7.15 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.02 Total: -43.13 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.57 Total: -21.80 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.04 Total: 15.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.20 -8.31 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491309216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.885 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds