Wall clock time and date at job start Wed Apr 1 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46556 * 2 1 4 4 C 1.52999 * 109.46735 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47784 * 305.00392 * 4 3 2 6 6 C 1.47201 * 109.47281 * 184.99772 * 4 3 2 7 7 N 4.86394 * 126.73440 * 3.15273 * 2 1 3 8 8 N 1.46505 * 109.46919 * 65.00200 * 4 3 2 9 9 C 1.34779 * 119.99817 * 204.99762 * 8 4 3 10 10 O 1.21722 * 120.00323 * 359.97438 * 9 8 4 11 11 C 1.46258 * 119.99981 * 180.02562 * 9 8 4 12 12 C 1.35024 * 120.00294 * 180.27473 * 11 9 8 13 13 C 1.46955 * 120.00313 * 179.72335 * 12 11 9 14 14 C 1.40032 * 120.07968 * 0.02562 * 13 12 11 15 15 C 1.37650 * 120.00323 * 179.97438 * 14 13 12 16 16 C 1.39053 * 120.15835 * 359.95157 * 15 14 13 17 17 O 1.35617 * 119.91792 * 180.02562 * 16 15 14 18 18 C 1.34759 * 117.00322 * 354.38287 * 17 16 15 19 19 H 1.08005 * 119.99492 * 5.05982 * 18 17 16 20 20 C 1.38702 * 120.00069 * 185.06527 * 18 17 16 21 21 N 1.31511 * 120.00430 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99792 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47008 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46619 * 119.99826 * 22 20 18 25 25 H 1.48493 * 109.47217 * 240.00102 * 22 20 18 26 26 C 1.39623 * 120.16060 * 0.02582 * 16 15 14 27 27 O 1.35957 * 120.00034 * 179.97438 * 26 16 15 28 28 C 1.42896 * 116.99725 * 180.02562 * 27 26 16 29 29 C 1.38070 * 119.99713 * 359.76198 * 26 16 15 30 30 H 1.08994 * 109.46730 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46900 * 299.99787 * 1 2 3 32 32 H 1.08996 * 109.46920 * 60.00111 * 1 2 3 33 33 H 1.09000 * 109.47135 * 240.00710 * 2 1 3 34 34 H 1.08996 * 109.46920 * 119.99889 * 2 1 3 35 35 H 1.09000 * 109.47343 * 60.00484 * 3 2 1 36 36 H 1.08996 * 109.47415 * 299.99585 * 3 2 1 37 37 H 0.97000 * 119.99910 * 24.99923 * 8 4 3 38 38 H 1.08001 * 119.99789 * 359.97438 * 11 9 8 39 39 H 1.08001 * 119.99329 * 359.72425 * 12 11 9 40 40 H 1.07999 * 119.99599 * 359.97420 * 14 13 12 41 41 H 1.08001 * 119.91651 * 179.97438 * 15 14 13 42 42 H 0.97004 * 120.00453 * 180.02562 * 21 20 18 43 43 H 1.09009 * 109.47091 * 180.02562 * 28 27 26 44 44 H 1.09001 * 109.47103 * 299.99545 * 28 27 26 45 45 H 1.08998 * 109.47293 * 60.00268 * 28 27 26 46 46 H 1.08004 * 120.08450 * 180.23067 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0605 2.8252 0.1215 7 7 4.4392 3.8921 0.2144 8 7 4.0588 0.8588 -1.2509 9 6 5.2808 0.2923 -1.2981 10 8 5.9785 0.2662 -0.3011 11 6 5.7691 -0.2901 -2.5477 12 6 6.9911 -0.8626 -2.5937 13 6 7.4792 -1.4532 -3.8477 14 6 6.6787 -1.4227 -4.9962 15 6 7.1377 -1.9759 -6.1701 16 6 8.3963 -2.5650 -6.2195 17 8 8.8439 -3.1081 -7.3787 18 6 7.9777 -3.1478 -8.4103 19 1 7.0064 -2.6846 -8.3180 20 6 8.3336 -3.7835 -9.5906 21 7 9.5161 -4.3480 -9.7029 22 14 7.1326 -3.8391 -11.0204 23 1 5.8802 -3.1363 -10.6424 24 1 7.7373 -3.1713 -12.2009 25 1 6.8258 -5.2530 -11.3545 26 6 9.2003 -2.5987 -5.0785 27 8 10.4302 -3.1760 -5.1303 28 6 11.1984 -3.1753 -3.9255 29 6 8.7482 -2.0419 -3.8987 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.5029 0.8799 -2.0456 38 1 5.1502 -0.2666 -3.4325 39 1 7.6098 -0.8865 -1.7087 40 1 5.7010 -0.9652 -4.9609 41 1 6.5189 -1.9520 -7.0549 42 1 9.7651 -4.7923 -10.5285 43 1 12.1558 -3.6647 -4.1047 44 1 11.3705 -2.1478 -3.6049 45 1 10.6553 -3.7124 -3.1479 46 1 9.3705 -2.0639 -3.0162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491401426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:40 Heat of formation + Delta-G solvation = -39.214502 kcal Electronic energy + Delta-G solvation = -28056.025131 eV Core-core repulsion = 23912.382178 eV Total energy + Delta-G solvation = -4143.642953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.11775 -39.71149 -37.71581 -37.59813 -36.56670 -35.83476 -33.77117 -33.11491 -32.30521 -30.15675 -29.73678 -28.54926 -26.61596 -25.66050 -25.09339 -23.46343 -21.86711 -21.63866 -21.18470 -19.47745 -18.35748 -18.24053 -17.86066 -17.11733 -16.75848 -15.99273 -15.44086 -15.26401 -15.23589 -14.82483 -14.63995 -14.54603 -14.22962 -14.02408 -13.85489 -13.63690 -13.54474 -13.49645 -13.29179 -12.94744 -12.71890 -12.44481 -12.22362 -12.16369 -11.85692 -11.75346 -11.57926 -11.49682 -11.45399 -11.16724 -11.15139 -11.07709 -10.82819 -10.72745 -10.53104 -10.00780 -9.67787 -9.62196 -9.45307 -8.89228 -8.03124 -6.96633 -6.66252 -4.17177 0.92103 2.07169 2.18726 2.43703 2.47582 3.01738 3.02715 3.09079 3.22618 3.32993 3.67936 3.79286 3.90971 4.26840 4.42117 4.43493 4.58753 4.79941 4.86075 4.93756 4.97285 5.02561 5.15277 5.19178 5.30264 5.37653 5.41410 5.51832 5.53222 5.54082 5.65663 5.65939 5.71068 5.80569 5.86456 5.94477 6.03616 6.16396 6.32750 6.41491 6.52084 6.78694 6.95087 7.04322 7.19958 7.23650 7.30005 7.42875 7.74265 8.03779 8.11274 8.76814 9.45338 10.49454 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.002090 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.395543 B =13391.005534 C =14988.169643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.122 4.122 4 C 0.245 3.755 5 H 0.130 0.870 6 C 0.194 3.806 7 N -0.421 5.421 8 N -0.724 5.724 9 C 0.560 3.440 10 O -0.550 6.550 11 C -0.284 4.284 12 C 0.043 3.957 13 C -0.170 4.170 14 C -0.057 4.057 15 C -0.226 4.226 16 C 0.149 3.851 17 O -0.146 6.146 18 C -0.390 4.390 19 H 0.099 0.901 20 C 0.041 3.959 21 N -0.843 5.843 22 Si 0.946 3.054 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.273 1.273 26 C 0.052 3.948 27 O -0.303 6.303 28 C 0.030 3.970 29 C -0.135 4.135 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.274 0.726 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 5.295 14.674 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.161 4.161 4 C 0.136 3.864 5 H 0.148 0.852 6 C -0.126 4.126 7 N -0.097 5.097 8 N -0.378 5.378 9 C 0.353 3.647 10 O -0.429 6.429 11 C -0.305 4.305 12 C 0.024 3.976 13 C -0.172 4.172 14 C -0.075 4.075 15 C -0.245 4.245 16 C 0.092 3.908 17 O -0.046 6.046 18 C -0.465 4.465 19 H 0.116 0.884 20 C -0.166 4.166 21 N -0.475 5.475 22 Si 0.770 3.230 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 C 0.007 3.993 27 O -0.217 6.217 28 C -0.066 4.066 29 C -0.154 4.154 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.496 6.520 15.060 20.627 hybrid contribution -0.923 -0.240 -0.885 1.301 sum -13.419 6.280 14.175 20.505 Atomic orbital electron populations 1.21769 0.95287 1.02092 1.01935 1.21533 0.96197 0.95094 1.03371 1.21910 0.90535 0.99229 1.04435 1.18321 0.94537 0.82654 0.90888 0.85248 1.29849 0.93637 0.95286 0.93848 1.81177 1.08167 1.13037 1.07333 1.45880 1.19022 1.60332 1.12575 1.18534 0.80197 0.76717 0.89283 1.90807 1.56119 1.59044 1.36954 1.22354 1.00029 1.11189 0.96918 1.22258 0.93244 0.86518 0.95621 1.18146 0.95935 1.09577 0.93503 1.20932 0.98117 0.96849 0.91611 1.20833 0.96977 1.07191 0.99545 1.18895 0.91500 0.94506 0.85881 1.83988 1.38779 1.65958 1.15912 1.21581 0.97769 1.36712 0.90473 0.88398 1.25430 0.97385 0.95347 0.98439 1.70051 1.18958 1.31199 1.27264 0.85575 0.79245 0.78675 0.79549 1.18792 1.19905 1.19877 1.18050 0.86743 1.02058 0.92494 1.86238 1.25900 1.75269 1.34310 1.22922 0.95553 1.01027 0.87090 1.20885 0.96776 1.01727 0.96061 0.92356 0.92663 0.92562 0.90961 0.91222 0.89435 0.90244 0.75561 0.85510 0.85936 0.86549 0.84481 0.91566 0.88949 0.93449 0.93399 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.50 5.82 -26.73 -0.16 -0.65 16 3 C -0.12 -0.50 4.71 -26.73 -0.13 -0.63 16 4 C 0.25 1.76 2.41 -70.71 -0.17 1.59 16 5 H 0.13 0.96 7.58 -51.93 -0.39 0.56 16 6 C 0.19 2.06 14.93 -20.76 -0.31 1.75 16 7 N -0.42 -5.71 18.54 42.15 0.78 -4.93 16 8 N -0.72 -5.80 4.49 -57.99 -0.26 -6.06 16 9 C 0.56 6.74 7.68 -13.04 -0.10 6.64 16 10 O -0.55 -8.54 15.89 5.17 0.08 -8.46 16 11 C -0.28 -3.46 9.41 -37.50 -0.35 -3.81 16 12 C 0.04 0.61 9.45 -37.20 -0.35 0.26 16 13 C -0.17 -2.80 5.87 -105.04 -0.62 -3.41 16 14 C -0.06 -0.95 9.40 -39.12 -0.37 -1.31 16 15 C -0.23 -4.50 9.14 -39.49 -0.36 -4.86 16 16 C 0.15 3.47 6.67 -38.76 -0.26 3.21 16 17 O -0.15 -4.01 9.52 -13.95 -0.13 -4.14 16 18 C -0.39 -10.24 9.48 30.90 0.29 -9.95 16 19 H 0.10 2.32 5.18 -52.48 -0.27 2.05 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.84 -23.59 13.67 55.48 0.76 -22.83 16 22 Si 0.95 19.14 29.55 -169.99 -5.02 14.12 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C 0.05 1.08 6.70 -39.13 -0.26 0.82 16 27 O -0.30 -6.34 10.28 -34.22 -0.35 -6.69 16 28 C 0.03 0.43 9.81 101.05 0.99 1.42 16 29 C -0.14 -2.35 8.77 -38.99 -0.34 -2.69 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.31 7.75 -51.93 -0.40 -0.09 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.41 2.16 8.58 -40.82 -0.35 1.81 16 38 H 0.13 1.29 6.06 -52.49 -0.32 0.98 16 39 H 0.12 1.72 7.52 -52.49 -0.39 1.32 16 40 H 0.12 1.55 6.15 -52.49 -0.32 1.22 16 41 H 0.14 2.66 5.62 -52.49 -0.29 2.36 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.09 1.14 8.14 -51.92 -0.42 0.71 16 44 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 45 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 46 H 0.12 1.81 6.28 -52.48 -0.33 1.48 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -33.88 400.27 -6.30 -40.18 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.97 Total: 3.66 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.22 Total: -10.88 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 1.28 Total: -33.82 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.40 Total: -19.29 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.88 -6.30 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491401426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.969 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds