Wall clock time and date at job start Wed Apr 1 2020 02:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47543 * 2 1 4 4 C 1.52996 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47181 * 55.00416 * 4 3 2 6 6 C 1.47203 * 109.47247 * 175.00614 * 4 3 2 7 7 N 4.86385 * 126.74132 * 356.85006 * 2 1 3 8 8 N 1.46504 * 109.47104 * 295.00269 * 4 3 2 9 9 C 1.34779 * 119.99808 * 155.00233 * 8 4 3 10 10 O 1.21722 * 120.00094 * 359.97438 * 9 8 4 11 11 C 1.46253 * 119.99534 * 180.02562 * 9 8 4 12 12 C 1.35035 * 119.99778 * 179.97438 * 11 9 8 13 13 C 1.46963 * 119.99835 * 179.97438 * 12 11 9 14 14 C 1.40025 * 120.08280 * 0.02562 * 13 12 11 15 15 C 1.37645 * 120.00280 * 179.97438 * 14 13 12 16 16 C 1.39056 * 120.15969 * 359.97438 * 15 14 13 17 17 O 1.35619 * 119.92191 * 180.02562 * 16 15 14 18 18 C 1.34760 * 116.99737 * 354.37702 * 17 16 15 19 19 H 1.07999 * 119.99856 * 5.06751 * 18 17 16 20 20 C 1.38701 * 120.00155 * 185.06217 * 18 17 16 21 21 N 1.31519 * 119.99724 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00480 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47049 * 89.99761 * 22 20 18 24 24 H 1.48495 * 109.47436 * 210.00202 * 22 20 18 25 25 H 1.48502 * 109.47137 * 330.00539 * 22 20 18 26 26 C 1.39620 * 120.15839 * 0.02562 * 16 15 14 27 27 O 1.35963 * 119.99975 * 179.97438 * 26 16 15 28 28 C 1.42893 * 116.99794 * 179.97438 * 27 26 16 29 29 C 1.38077 * 119.99971 * 0.02562 * 26 16 15 30 30 H 1.09006 * 109.47234 * 59.99221 * 1 2 3 31 31 H 1.08992 * 109.47706 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46815 * 299.99690 * 1 2 3 33 33 H 1.09002 * 109.46815 * 240.00310 * 2 1 3 34 34 H 1.08996 * 109.46768 * 120.00581 * 2 1 3 35 35 H 1.09002 * 109.46812 * 60.00308 * 3 2 1 36 36 H 1.08996 * 109.47532 * 300.00650 * 3 2 1 37 37 H 0.96998 * 120.00072 * 334.99745 * 8 4 3 38 38 H 1.08002 * 120.00566 * 359.97438 * 11 9 8 39 39 H 1.08002 * 119.99656 * 0.02562 * 12 11 9 40 40 H 1.08003 * 119.99766 * 0.26160 * 14 13 12 41 41 H 1.07996 * 119.92050 * 179.97438 * 15 14 13 42 42 H 0.97007 * 120.00162 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.47288 * 300.00329 * 28 27 26 44 44 H 1.09001 * 109.47412 * 59.99821 * 28 27 26 45 45 H 1.09003 * 109.47287 * 180.02562 * 28 27 26 46 46 H 1.08002 * 120.07627 * 179.97438 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0608 2.8249 -0.1215 7 7 4.4396 3.8917 -0.2142 8 7 4.0589 0.8583 1.2509 9 6 5.2809 0.2917 1.2980 10 8 5.9781 0.2648 0.3006 11 6 5.7686 -0.2918 2.5473 12 6 6.9927 -0.8599 2.5944 13 6 7.4830 -1.4458 3.8499 14 6 6.6821 -1.4162 4.9980 15 6 7.1428 -1.9659 6.1729 16 6 8.4028 -2.5518 6.2232 17 8 8.8517 -3.0924 7.3832 18 6 8.0794 -2.9258 8.4749 19 1 7.1121 -2.4539 8.3851 20 6 8.5267 -3.3605 9.7138 21 7 9.7048 -3.9348 9.8231 22 14 7.4559 -3.1303 11.2270 23 1 6.5837 -4.3194 11.4018 24 1 8.3192 -2.9692 12.4244 25 1 6.6134 -1.9192 11.0576 26 6 9.2070 -2.5850 5.0824 27 8 10.4388 -3.1583 5.1353 28 6 11.2071 -3.1572 3.9305 29 6 8.7519 -2.0346 3.9006 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 3.5031 0.8795 2.0456 38 1 5.1498 -0.2683 3.4321 39 1 7.6117 -0.8830 1.7096 40 1 5.7010 -0.9663 4.9606 41 1 6.5241 -1.9420 7.0578 42 1 10.0179 -4.2385 10.6895 43 1 10.6657 -3.6975 3.1538 44 1 11.3758 -2.1298 3.6080 45 1 12.1656 -3.6441 4.1104 46 1 9.3731 -2.0592 3.0175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491401427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:43 Heat of formation + Delta-G solvation = -61.278205 kcal Electronic energy + Delta-G solvation = -28055.106441 eV Core-core repulsion = 23910.506733 eV Total energy + Delta-G solvation = -4144.599707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32384 -40.95792 -39.30092 -38.49983 -37.95620 -36.59946 -34.62432 -34.40255 -33.86135 -31.30321 -30.84887 -29.76139 -27.85998 -27.35487 -25.74979 -24.62593 -23.32560 -22.43804 -22.00152 -20.57458 -19.93053 -19.35794 -19.11466 -18.26849 -17.74703 -17.22088 -16.87136 -16.66891 -16.31650 -15.82582 -15.62392 -15.55068 -15.46912 -15.26492 -15.10003 -15.00064 -14.97516 -14.25936 -13.96249 -13.90839 -13.75240 -13.64498 -13.30727 -13.22824 -13.12009 -12.85698 -12.68464 -12.63008 -12.46645 -12.15576 -12.11825 -12.02189 -11.99439 -11.82632 -11.45203 -11.32304 -11.02727 -10.97876 -10.57798 -10.38730 -9.46175 -8.51872 -8.45986 -6.10467 -0.30535 0.56650 1.09414 1.37443 1.38205 1.48830 1.56243 1.66035 2.18183 2.27633 2.40588 2.56863 2.84938 2.93667 3.16214 3.37527 3.72339 3.79071 3.95078 4.05428 4.16197 4.23358 4.28979 4.33688 4.42214 4.42290 4.48133 4.54636 4.64577 4.71183 4.71394 4.83927 4.93081 5.00488 5.08883 5.09407 5.12610 5.24351 5.33092 5.39675 5.45380 5.48616 5.53980 5.59745 5.79510 5.93696 5.99887 6.41586 6.51039 6.60792 6.96595 7.19206 7.77228 8.75731 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.002080 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.017657 B =13460.843216 C =14954.532388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.247 3.753 5 H 0.133 0.867 6 C 0.216 3.784 7 N -0.476 5.476 8 N -0.704 5.704 9 C 0.557 3.443 10 O -0.582 6.582 11 C -0.238 4.238 12 C 0.014 3.986 13 C -0.134 4.134 14 C -0.064 4.064 15 C -0.218 4.218 16 C 0.100 3.900 17 O -0.213 6.213 18 C -0.414 4.414 19 H 0.111 0.889 20 C -0.024 4.024 21 N -0.915 5.915 22 Si 1.021 2.979 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.247 1.247 26 C 0.036 3.964 27 O -0.344 6.344 28 C 0.020 3.980 29 C -0.135 4.135 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.426 0.574 38 H 0.158 0.842 39 H 0.127 0.873 40 H 0.162 0.838 41 H 0.138 0.862 42 H 0.273 0.727 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.048 6.671 -17.523 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.151 4.151 4 C 0.138 3.862 5 H 0.151 0.849 6 C -0.104 4.104 7 N -0.153 5.153 8 N -0.358 5.358 9 C 0.348 3.652 10 O -0.463 6.463 11 C -0.258 4.258 12 C -0.006 4.006 13 C -0.135 4.135 14 C -0.081 4.081 15 C -0.238 4.238 16 C 0.048 3.952 17 O -0.118 6.118 18 C -0.490 4.490 19 H 0.128 0.872 20 C -0.222 4.222 21 N -0.552 5.552 22 Si 0.840 3.160 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.170 1.170 26 C -0.009 4.009 27 O -0.260 6.260 28 C -0.074 4.074 29 C -0.153 4.153 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.265 0.735 38 H 0.175 0.825 39 H 0.144 0.856 40 H 0.179 0.821 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.127 0.873 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.569 7.939 -17.981 25.707 hybrid contribution 0.061 -0.416 1.013 1.097 sum -16.507 7.523 -16.968 24.840 Atomic orbital electron populations 1.21766 0.95060 1.02026 1.02290 1.21514 0.96323 0.94772 1.03377 1.21909 0.87709 0.99734 1.05767 1.18654 0.96461 0.80646 0.90424 0.84919 1.30430 0.92152 0.95526 0.92263 1.81210 1.10050 1.14962 1.09060 1.45730 1.17804 1.58455 1.13792 1.18569 0.81041 0.76906 0.88638 1.90822 1.57350 1.60192 1.37982 1.22775 0.98849 1.06411 0.97813 1.22150 0.94723 0.89071 0.94662 1.18543 0.94853 1.05818 0.94252 1.21322 1.00000 0.96665 0.90144 1.21052 0.95385 1.06404 1.00920 1.19610 0.93564 0.95420 0.86576 1.83980 1.47238 1.65865 1.14742 1.21989 1.01206 1.41537 0.84229 0.87157 1.26693 0.98177 0.95580 1.01730 1.70210 1.20217 1.38348 1.26435 0.84549 0.76985 0.79896 0.74558 1.18690 1.20044 1.17048 1.18407 0.86508 1.02658 0.93336 1.86191 1.26287 1.75774 1.37703 1.23267 0.95799 1.02652 0.85687 1.21268 0.97634 1.00809 0.95635 0.92412 0.92682 0.92175 0.91376 0.90868 0.88870 0.88310 0.73459 0.82490 0.85562 0.82079 0.84488 0.91803 0.91508 0.91756 0.87323 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.91 71.98 0.71 0.09 16 2 C -0.12 -0.47 5.82 30.59 0.18 -0.30 16 3 C -0.11 -0.42 4.71 30.59 0.14 -0.28 16 4 C 0.25 2.54 2.41 43.18 0.10 2.64 16 5 H 0.13 1.44 7.58 -2.39 -0.02 1.43 16 6 C 0.22 3.94 14.93 89.44 1.34 5.27 16 7 N -0.48 -12.02 18.54 20.01 0.37 -11.65 16 8 N -0.70 -7.69 4.49 -455.61 -2.05 -9.73 16 9 C 0.56 10.67 7.68 86.33 0.66 11.33 16 10 O -0.58 -15.85 15.89 -4.42 -0.07 -15.92 16 11 C -0.24 -4.42 9.41 23.62 0.22 -4.20 16 12 C 0.01 0.33 9.45 23.82 0.23 0.55 16 13 C -0.13 -3.92 5.87 -20.14 -0.12 -4.04 16 14 C -0.06 -1.90 9.40 22.56 0.21 -1.69 16 15 C -0.22 -8.65 9.14 22.33 0.20 -8.44 16 16 C 0.10 4.89 6.67 22.80 0.15 5.04 16 17 O -0.21 -12.69 9.52 -6.62 -0.06 -12.75 16 18 C -0.41 -23.26 9.48 67.93 0.64 -22.62 16 19 H 0.11 5.48 5.18 -2.91 -0.02 5.47 16 20 C -0.02 -1.30 5.49 84.85 0.47 -0.84 16 21 N -0.92 -55.72 13.67 21.62 0.30 -55.43 16 22 Si 1.02 41.17 29.55 68.60 2.03 43.20 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 26 C 0.04 1.54 6.70 22.57 0.15 1.69 16 27 O -0.34 -15.05 10.28 -79.16 -0.81 -15.87 16 28 C 0.02 0.58 9.81 113.37 1.11 1.69 16 29 C -0.13 -4.45 8.77 22.65 0.20 -4.25 16 30 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.05 0.27 8.14 -2.39 -0.02 0.26 16 32 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.07 0.28 7.75 -2.39 -0.02 0.26 16 35 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.43 1.92 8.58 -92.71 -0.80 1.13 16 38 H 0.16 2.01 6.06 -2.91 -0.02 1.99 16 39 H 0.13 3.02 7.52 -2.91 -0.02 3.00 16 40 H 0.16 3.30 6.15 -2.91 -0.02 3.29 16 41 H 0.14 5.32 5.61 -2.91 -0.02 5.30 16 42 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 43 H 0.07 1.60 7.66 -2.38 -0.02 1.59 16 44 H 0.06 1.58 7.65 -2.39 -0.02 1.56 16 45 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.15 4.05 6.28 -2.91 -0.02 4.03 16 Total: -1.00 -83.40 400.27 6.55 -76.85 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.24 Total: 19.65 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 6.61 Total: -18.35 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -1.38 Total: -76.81 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.95 Total: -44.54 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -83.40 6.55 -76.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491401427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.573 kcal (2) G-P(sol) polarization free energy of solvation -83.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds