Wall clock time and date at job start Wed Apr 1 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47594 * 2 1 4 4 H 1.09006 * 109.47003 * 305.00079 * 3 2 1 5 5 C 1.52993 * 109.47494 * 185.00298 * 3 2 1 6 6 C 1.47201 * 109.47365 * 174.99980 * 5 3 2 7 7 N 4.86386 * 126.40502 * 355.02391 * 2 1 3 8 8 N 1.46497 * 109.47112 * 64.99432 * 3 2 1 9 9 C 1.34775 * 120.00382 * 275.00466 * 8 3 2 10 10 O 1.21719 * 119.99908 * 359.97438 * 9 8 3 11 11 C 1.46258 * 119.99788 * 179.97438 * 9 8 3 12 12 C 1.35030 * 119.99648 * 173.21776 * 11 9 8 13 13 C 1.46965 * 119.99743 * 348.67447 * 12 11 9 14 14 C 1.40031 * 120.07293 * 136.65154 * 13 12 11 15 15 C 1.37648 * 119.99890 * 179.97438 * 14 13 12 16 16 C 1.39063 * 120.16082 * 0.02562 * 15 14 13 17 17 O 1.35611 * 119.91912 * 180.02562 * 16 15 14 18 18 C 1.34760 * 117.00027 * 354.29003 * 17 16 15 19 19 H 1.08000 * 120.00223 * 5.06828 * 18 17 16 20 20 C 1.38715 * 119.99918 * 185.06232 * 18 17 16 21 21 N 1.31522 * 119.99955 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99939 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47223 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47004 * 120.00477 * 22 20 18 25 25 H 1.48509 * 109.46860 * 240.00140 * 22 20 18 26 26 C 1.39621 * 120.15626 * 359.97216 * 16 15 14 27 27 O 1.35957 * 119.99707 * 180.02562 * 26 16 15 28 28 C 1.42897 * 116.99688 * 180.02562 * 27 26 16 29 29 C 1.38074 * 119.99985 * 359.79159 * 26 16 15 30 30 H 1.08997 * 109.46619 * 300.00118 * 1 2 3 31 31 H 1.08999 * 109.47007 * 60.00364 * 1 2 3 32 32 H 1.08997 * 109.46850 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47039 * 239.99756 * 2 1 3 34 34 H 1.09009 * 109.47198 * 120.00180 * 2 1 3 35 35 H 1.09005 * 109.46849 * 294.99467 * 5 3 2 36 36 H 1.08997 * 109.47737 * 54.99701 * 5 3 2 37 37 H 0.97004 * 119.99762 * 95.00524 * 8 3 2 38 38 H 1.07991 * 120.00291 * 353.21478 * 11 9 8 39 39 H 1.08002 * 119.99806 * 168.68481 * 12 11 9 40 40 H 1.08000 * 120.00225 * 359.94597 * 14 13 12 41 41 H 1.08002 * 119.92023 * 180.02562 * 15 14 13 42 42 H 0.96991 * 119.99943 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46893 * 60.00362 * 28 27 26 44 44 H 1.09000 * 109.46842 * 180.02562 * 28 27 26 45 45 H 1.09002 * 109.47372 * 300.00459 * 28 27 26 46 46 H 1.08001 * 120.08257 * 180.25350 * 29 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1258 6 6 4.0457 2.8302 -0.2464 7 7 4.4167 3.8999 -0.3396 8 7 1.6525 2.0974 1.2517 9 6 0.4352 2.6644 1.3669 10 8 -0.3420 2.6326 0.4306 11 6 0.0482 3.3178 2.6168 12 6 -1.1129 4.0035 2.6887 13 6 -1.8644 4.3066 1.4627 14 6 -3.2554 4.1479 1.4350 15 6 -3.9579 4.4327 0.2860 16 6 -3.2894 4.8777 -0.8493 17 8 -3.9864 5.1574 -1.9785 18 6 -5.3032 4.8712 -1.9714 19 1 -5.7737 4.5158 -1.0666 20 6 -6.0545 5.0333 -3.1262 21 7 -5.4815 5.4657 -4.2282 22 14 -7.8800 4.6373 -3.1161 23 1 -8.2780 4.1715 -1.7633 24 1 -8.6527 5.8555 -3.4680 25 1 -8.1603 3.5692 -4.1091 26 6 -1.9027 5.0384 -0.8290 27 8 -1.2525 5.4742 -1.9407 28 6 0.1665 5.6151 -1.8489 29 6 -1.1921 4.7592 0.3215 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.0030 0.9835 0.7596 36 1 3.8572 0.8799 -1.0113 37 1 2.2720 2.1231 1.9977 38 1 0.6909 3.2520 3.4821 39 1 -1.4891 4.3292 3.6473 40 1 -3.7771 3.8016 2.3149 41 1 -5.0307 4.3102 0.2662 42 1 -6.0067 5.5787 -5.0357 43 1 0.6126 4.6501 -1.6081 44 1 0.5588 5.9694 -2.8021 45 1 0.4105 6.3335 -1.0663 46 1 -0.1198 4.8869 0.3399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492584443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:13 Heat of formation + Delta-G solvation = -17.695698 kcal Electronic energy + Delta-G solvation = -30469.488649 eV Core-core repulsion = 26326.778821 eV Total energy + Delta-G solvation = -4142.709828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.20519 -39.30436 -37.54338 -37.38642 -36.31152 -35.50942 -33.01449 -32.40356 -31.94821 -30.79356 -29.35102 -28.33302 -26.56165 -25.44759 -24.88938 -23.28254 -21.53725 -21.30425 -20.72952 -19.48601 -17.99315 -17.94267 -17.52472 -16.88980 -16.38985 -15.88065 -15.39468 -15.02946 -15.01025 -14.56609 -14.55235 -14.38735 -14.02707 -13.88179 -13.45854 -13.44158 -13.28238 -13.21046 -12.95064 -12.83035 -12.68835 -12.27561 -12.12984 -11.85740 -11.66753 -11.55608 -11.45073 -11.25536 -11.22416 -10.97829 -10.95705 -10.86256 -10.56114 -10.43013 -10.28284 -9.48847 -9.40929 -9.18043 -9.00652 -8.67189 -7.45467 -6.71674 -6.41473 -3.94312 1.18917 2.41469 2.47637 2.51618 2.64049 3.15552 3.16802 3.20584 3.22169 3.56683 3.65553 3.98950 4.17520 4.37954 4.65033 4.70301 4.87394 4.99406 5.07343 5.09742 5.12803 5.18459 5.27879 5.34689 5.52206 5.62644 5.66670 5.69735 5.75831 5.79976 5.83390 5.96410 5.97170 6.13612 6.26535 6.32396 6.44583 6.48622 6.56264 6.58870 6.74209 7.06030 7.21580 7.29251 7.30509 7.43190 7.59433 7.73393 8.00400 8.32823 8.50637 9.02743 9.76150 10.75677 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003073 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.917023 B = 9109.019637 C = 9388.129023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.149 3.851 4 H 0.097 0.903 5 C -0.034 4.034 6 C 0.201 3.799 7 N -0.428 5.428 8 N -0.736 5.736 9 C 0.539 3.461 10 O -0.499 6.499 11 C -0.267 4.267 12 C 0.027 3.973 13 C -0.157 4.157 14 C -0.064 4.064 15 C -0.231 4.231 16 C 0.153 3.847 17 O -0.158 6.158 18 C -0.388 4.388 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.853 5.853 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C 0.045 3.955 27 O -0.304 6.304 28 C 0.038 3.962 29 C -0.078 4.078 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.395 0.605 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.270 0.730 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.844 -10.702 12.922 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.115 0.885 5 C -0.075 4.075 6 C -0.117 4.117 7 N -0.104 5.104 8 N -0.390 5.390 9 C 0.329 3.671 10 O -0.374 6.374 11 C -0.288 4.288 12 C 0.007 3.993 13 C -0.158 4.158 14 C -0.083 4.083 15 C -0.250 4.250 16 C 0.098 3.902 17 O -0.060 6.060 18 C -0.464 4.464 19 H 0.112 0.888 20 C -0.166 4.166 21 N -0.487 5.487 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C 0.000 4.000 27 O -0.218 6.218 28 C -0.058 4.058 29 C -0.097 4.097 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.228 0.772 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.150 0.850 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.106 0.894 45 H 0.059 0.941 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.732 -8.905 11.398 21.371 hybrid contribution -0.338 -0.780 0.719 1.113 sum 15.393 -9.685 12.117 21.854 Atomic orbital electron populations 1.21796 0.93993 1.00644 1.03953 1.21924 0.97955 0.94642 1.02187 1.20934 0.90764 0.94827 0.89217 0.88494 1.19670 0.95939 0.85520 1.06326 1.29064 0.93715 0.95198 0.93747 1.81262 1.08810 1.12045 1.08289 1.46066 1.17375 1.59703 1.15825 1.18413 0.81154 0.78842 0.88691 1.91034 1.49672 1.57115 1.39610 1.22604 1.01038 1.07411 0.97770 1.22322 0.91352 0.88669 0.96948 1.18019 0.92863 1.11266 0.93656 1.20671 0.92317 0.98281 0.96999 1.20711 1.00427 1.10944 0.92930 1.18821 0.88392 0.94783 0.88223 1.83994 1.22028 1.69699 1.30313 1.21478 0.81058 1.45456 0.98453 0.88831 1.25340 1.00446 0.96648 0.94189 1.70066 1.36524 1.41322 1.00773 0.85640 0.80495 0.78382 0.78862 1.18993 1.20138 1.20116 1.17966 0.89185 1.05794 0.87060 1.86207 1.19321 1.82605 1.33695 1.22782 0.80961 0.99996 1.02105 1.20482 0.97330 1.00556 0.91333 0.91993 0.91729 0.93706 0.90971 0.91687 0.86943 0.85856 0.77175 0.86255 0.85994 0.87426 0.85012 0.92020 0.93849 0.89412 0.94141 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.51 37.16 0.32 -1.37 16 2 C -0.13 -0.93 5.61 -26.73 -0.15 -1.08 16 3 C 0.15 1.15 2.23 -67.94 -0.15 1.00 16 4 H 0.10 1.06 7.57 -51.93 -0.39 0.67 16 5 C -0.03 -0.15 5.25 -29.52 -0.16 -0.30 16 6 C 0.20 1.76 15.14 -20.76 -0.31 1.45 16 7 N -0.43 -5.34 18.54 42.15 0.78 -4.56 16 8 N -0.74 -6.42 4.72 -55.25 -0.26 -6.68 16 9 C 0.54 6.97 5.34 -13.04 -0.07 6.90 16 10 O -0.50 -8.57 9.31 5.17 0.05 -8.52 16 11 C -0.27 -3.14 9.90 -37.50 -0.37 -3.51 16 12 C 0.03 0.36 9.80 -37.19 -0.36 0.00 16 13 C -0.16 -2.84 4.54 -105.04 -0.48 -3.32 16 14 C -0.06 -1.22 9.78 -39.13 -0.38 -1.61 16 15 C -0.23 -5.23 9.14 -39.49 -0.36 -5.59 16 16 C 0.15 3.99 6.67 -38.76 -0.26 3.73 16 17 O -0.16 -4.78 9.52 -13.94 -0.13 -4.91 16 18 C -0.39 -11.17 9.48 30.91 0.29 -10.88 16 19 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.85 -25.70 13.67 55.48 0.76 -24.94 16 22 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.04 1.07 6.70 -39.13 -0.26 0.80 16 27 O -0.30 -7.29 10.28 -34.22 -0.35 -7.65 16 28 C 0.04 0.67 9.81 101.05 0.99 1.66 16 29 C -0.08 -1.55 5.58 -38.99 -0.22 -1.77 16 30 H 0.06 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.06 0.92 7.84 -51.93 -0.41 0.52 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 35 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.39 2.33 8.58 -40.82 -0.35 1.98 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.13 2.93 5.62 -52.49 -0.29 2.64 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.04 0.75 7.67 -51.93 -0.40 0.35 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 46 H 0.11 2.02 5.24 -52.49 -0.28 1.74 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -37.28 388.24 -6.38 -43.66 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.02 Total: 4.82 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.03 Total: -12.89 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 1.28 Total: -36.18 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.44 Total: -21.07 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.28 -6.38 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492584443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.965 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds