Wall clock time and date at job start Wed Apr 1 2020 03:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00087 * 2 1 4 4 N 1.46506 * 109.47190 * 124.99864 * 3 2 1 5 5 C 1.46497 * 119.99949 * 270.00687 * 4 3 2 6 6 C 1.50708 * 109.46981 * 269.99492 * 5 4 3 7 7 H 1.07998 * 119.99355 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99848 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00121 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99765 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47199 * 119.99645 * 10 8 6 13 13 H 1.48506 * 109.47011 * 239.99796 * 10 8 6 14 14 C 1.34780 * 119.99714 * 90.00283 * 4 3 2 15 15 O 1.21719 * 119.99941 * 180.02562 * 14 4 3 16 16 C 1.46258 * 119.99999 * 0.02562 * 14 4 3 17 17 C 1.34970 * 120.00132 * 180.02562 * 16 14 4 18 18 C 1.47008 * 120.00337 * 179.97438 * 17 16 14 19 19 C 1.39967 * 120.11494 * 179.97438 * 18 17 16 20 20 C 1.37664 * 119.88523 * 180.02562 * 19 18 17 21 21 C 1.39020 * 120.11130 * 0.26204 * 20 19 18 22 22 O 1.35738 * 119.88248 * 179.73863 * 21 20 19 23 23 C 1.42903 * 116.99964 * 179.97438 * 22 21 20 24 24 C 1.50697 * 109.47031 * 180.02562 * 23 22 21 25 25 N 1.34778 * 119.99932 * 180.02562 * 24 23 22 26 26 O 1.21276 * 120.00555 * 0.02562 * 24 23 22 27 27 C 1.39020 * 120.22793 * 359.48372 * 21 20 19 28 28 C 1.37658 * 120.11632 * 0.51634 * 27 21 20 29 29 H 1.07999 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00092 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99847 * 180.02562 * 2 1 3 32 32 H 1.09012 * 109.47202 * 5.00501 * 3 2 1 33 33 H 1.08998 * 109.47925 * 245.00276 * 3 2 1 34 34 H 1.08997 * 109.47801 * 29.99823 * 5 4 3 35 35 H 1.09004 * 109.46957 * 149.99965 * 5 4 3 36 36 H 0.96993 * 120.00072 * 179.97438 * 9 8 6 37 37 H 1.08003 * 120.00067 * 359.97438 * 16 14 4 38 38 H 1.08003 * 119.99800 * 0.02562 * 17 16 14 39 39 H 1.07999 * 120.05751 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.94028 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47477 * 300.00730 * 23 22 21 42 42 H 1.09004 * 109.46657 * 60.00227 * 23 22 21 43 43 H 0.97001 * 119.99921 * 0.02562 * 25 24 23 44 44 H 0.97000 * 120.00481 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.94133 * 180.25300 * 27 21 20 46 46 H 1.08002 * 120.06360 * 179.76704 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8648 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3033 3.8369 1.6366 8 6 2.5193 4.0664 3.6088 9 7 1.9598 3.4655 4.6362 10 14 2.8724 5.8993 3.6775 11 1 3.5003 6.3306 2.4028 12 1 1.6018 6.6410 3.8796 13 1 3.7963 6.1836 4.8049 14 6 4.2497 0.8661 0.9824 15 8 5.0225 0.8880 1.9225 16 6 4.6841 0.3345 -0.3091 17 6 5.9417 -0.1323 -0.4583 18 6 6.3781 -0.6672 -1.7562 19 6 7.6818 -1.1514 -1.9136 20 6 8.0857 -1.6507 -3.1313 21 6 7.2028 -1.6695 -4.2049 22 8 7.6075 -2.1580 -5.4050 23 6 6.6500 -2.1485 -6.4657 24 6 7.2738 -2.7244 -7.7107 25 7 6.5525 -2.8155 -8.8456 26 8 8.4248 -3.1059 -7.6916 27 6 5.9052 -1.1946 -4.0524 28 6 5.4914 -0.6932 -2.8389 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 1.4887 1.6965 2.5460 35 1 3.0990 1.3601 3.2260 36 1 1.7316 3.9740 5.4300 37 1 3.9983 0.3148 -1.1432 38 1 6.6271 -0.1137 0.3762 39 1 8.3698 -1.1334 -1.0813 40 1 9.0916 -2.0243 -3.2539 41 1 5.7863 -2.7495 -6.1810 42 1 6.3319 -1.1239 -6.6587 43 1 5.6320 -2.5100 -8.8610 44 1 6.9541 -3.1859 -9.6471 45 1 5.2218 -1.2151 -4.8885 46 1 4.4842 -0.3210 -2.7224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492799872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:34 Heat of formation + Delta-G solvation = -40.168515 kcal Electronic energy + Delta-G solvation = -28070.041699 eV Core-core repulsion = 23926.357376 eV Total energy + Delta-G solvation = -4143.684323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79723 -39.65834 -39.06635 -37.75010 -35.68678 -34.33331 -33.65162 -33.06069 -32.04604 -31.39800 -29.89431 -28.50343 -27.39063 -25.50951 -24.21274 -23.32097 -22.49522 -21.20833 -20.43893 -19.77606 -18.87013 -18.35206 -17.97375 -17.02805 -16.86490 -16.86129 -16.45682 -15.93689 -15.54638 -15.20619 -14.76942 -14.67036 -14.58434 -14.41290 -14.24612 -14.02891 -13.58755 -13.16230 -13.09133 -12.90022 -12.69181 -12.30349 -12.20712 -11.74047 -11.69525 -11.56504 -11.27963 -11.07991 -11.02028 -10.86583 -10.59816 -10.51608 -10.34775 -10.18160 -9.85502 -9.60471 -9.30985 -9.20370 -8.98182 -8.42820 -7.98230 -7.62808 -6.03298 -4.07960 0.58857 1.10408 1.96797 2.10246 2.17833 2.44153 3.30108 3.30442 3.37834 3.41861 3.57424 3.98910 4.10061 4.12247 4.35243 4.44047 4.45594 4.50671 4.55730 4.75162 5.01626 5.09648 5.16459 5.23167 5.28898 5.31131 5.39809 5.51789 5.68232 5.75890 5.90150 5.99343 6.03408 6.10924 6.11520 6.19406 6.40185 6.47579 6.61702 6.66834 6.78334 6.91217 6.99487 7.12977 7.46711 7.56251 7.60703 7.93439 8.24425 8.42043 8.91376 9.10072 9.57019 11.04743 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.001879 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.056669 B =14897.866428 C =15555.781400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.587 5.587 5 C 0.246 3.754 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.534 3.466 15 O -0.543 6.543 16 C -0.194 4.194 17 C -0.045 4.045 18 C -0.094 4.094 19 C -0.059 4.059 20 C -0.147 4.147 21 C 0.128 3.872 22 O -0.290 6.290 23 C 0.038 3.962 24 C 0.520 3.480 25 N -0.851 5.851 26 O -0.518 6.518 27 C -0.210 4.210 28 C -0.065 4.065 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.404 0.596 44 H 0.409 0.591 45 H 0.129 0.871 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -12.608 -26.191 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.317 5.317 5 C 0.127 3.873 6 C -0.564 4.564 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.323 3.677 15 O -0.423 6.423 16 C -0.214 4.214 17 C -0.065 4.065 18 C -0.094 4.094 19 C -0.077 4.077 20 C -0.165 4.165 21 C 0.082 3.918 22 O -0.202 6.202 23 C -0.041 4.041 24 C 0.303 3.697 25 N -0.418 5.418 26 O -0.392 6.392 27 C -0.229 4.229 28 C -0.083 4.083 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.232 0.768 44 H 0.241 0.759 45 H 0.147 0.853 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.025 -12.805 -25.319 28.657 hybrid contribution -0.664 1.089 -0.362 1.325 sum 3.362 -11.717 -25.682 28.428 Atomic orbital electron populations 1.23817 0.95849 1.01732 1.00714 1.23467 0.96392 0.99090 0.99766 1.20612 0.93016 0.95315 0.89880 1.48127 1.10385 1.59646 1.13568 1.19295 0.95423 0.93803 0.78779 1.21478 1.40374 0.93282 1.01258 0.92371 1.24937 0.95097 0.98766 0.95354 1.69942 1.42155 1.36067 1.05155 0.86448 0.77879 0.84977 0.78147 1.19795 1.21001 1.20877 1.18136 0.82517 0.79002 0.88073 1.90785 1.52677 1.56914 1.41895 1.23287 0.97346 1.02735 0.98065 1.22230 0.96089 0.93296 0.94841 1.19050 0.94250 1.02278 0.93854 1.21229 0.95036 0.94864 0.96558 1.20361 1.00135 1.05014 0.91013 1.19185 0.93129 0.94532 0.84922 1.86106 1.38508 1.78506 1.17124 1.22450 0.92411 1.02830 0.86365 1.20077 0.86467 0.78531 0.84631 1.43659 1.17379 1.67670 1.13060 1.90822 1.17108 1.46836 1.84404 1.21116 0.95395 1.06853 0.99521 1.21229 0.99503 0.96141 0.91448 0.88299 0.88812 0.87704 0.89459 0.90727 0.94928 0.93796 0.92793 0.85794 0.84694 0.84486 0.84735 0.88636 0.88616 0.76771 0.75914 0.85336 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 14.32 29.01 0.42 -1.89 16 2 C -0.17 -2.33 9.85 -36.03 -0.35 -2.68 16 3 C 0.14 2.17 5.56 -5.19 -0.03 2.14 16 4 N -0.59 -12.47 2.44 -178.13 -0.43 -12.90 16 5 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 6 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.53 11.26 7.60 -13.04 -0.10 11.16 16 15 O -0.54 -13.85 15.81 5.17 0.08 -13.77 16 16 C -0.19 -2.98 8.60 -37.52 -0.32 -3.30 16 17 C -0.04 -0.63 9.45 -37.19 -0.35 -0.98 16 18 C -0.09 -1.08 5.87 -105.05 -0.62 -1.70 16 19 C -0.06 -0.61 9.79 -39.14 -0.38 -0.99 16 20 C -0.15 -1.49 9.97 -39.50 -0.39 -1.88 16 21 C 0.13 1.27 6.70 -39.00 -0.26 1.01 16 22 O -0.29 -2.93 9.66 -38.83 -0.38 -3.30 16 23 C 0.04 0.22 5.21 36.00 0.19 0.41 16 24 C 0.52 3.70 8.18 -10.99 -0.09 3.61 16 25 N -0.85 -2.09 8.87 31.22 0.28 -1.81 16 26 O -0.52 -6.52 17.34 -14.35 -0.25 -6.77 16 27 C -0.21 -1.78 9.01 -39.50 -0.36 -2.14 16 28 C -0.07 -0.64 9.40 -39.14 -0.37 -1.01 16 29 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 30 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.10 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.09 1.45 7.72 -51.92 -0.40 1.05 16 33 H 0.07 0.98 6.09 -51.93 -0.32 0.66 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 37 H 0.12 1.51 4.21 -52.48 -0.22 1.29 16 38 H 0.14 2.02 7.52 -52.48 -0.39 1.63 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.10 0.31 7.64 -51.93 -0.40 -0.09 16 42 H 0.10 0.32 7.66 -51.93 -0.40 -0.08 16 43 H 0.40 -0.38 8.83 -40.82 -0.36 -0.74 16 44 H 0.41 0.75 8.93 -40.82 -0.36 0.39 16 45 H 0.13 0.68 6.27 -52.48 -0.33 0.35 16 46 H 0.13 1.11 6.16 -52.49 -0.32 0.78 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -38.82 400.49 -8.38 -47.20 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.96 Total: -0.24 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.47 Total: -5.43 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.58 Total: -40.64 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.54 Total: -23.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.82 -8.38 -47.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492799872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.030 kcal (2) G-P(sol) polarization free energy of solvation -38.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds