Wall clock time and date at job start Wed Apr 1 2020 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00087 * 2 1 4 4 N 1.46506 * 109.47190 * 124.99864 * 3 2 1 5 5 C 1.46497 * 119.99949 * 270.00687 * 4 3 2 6 6 C 1.50708 * 109.46981 * 269.99492 * 5 4 3 7 7 H 1.07998 * 119.99355 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99848 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00121 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99765 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47314 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47199 * 119.99645 * 10 8 6 13 13 H 1.48506 * 109.47011 * 239.99796 * 10 8 6 14 14 C 1.34780 * 119.99714 * 90.00283 * 4 3 2 15 15 O 1.21719 * 119.99941 * 180.02562 * 14 4 3 16 16 C 1.46258 * 119.99999 * 0.02562 * 14 4 3 17 17 C 1.34970 * 120.00132 * 180.02562 * 16 14 4 18 18 C 1.47008 * 120.00337 * 179.97438 * 17 16 14 19 19 C 1.39967 * 120.11494 * 179.97438 * 18 17 16 20 20 C 1.37664 * 119.88523 * 180.02562 * 19 18 17 21 21 C 1.39020 * 120.11130 * 0.26204 * 20 19 18 22 22 O 1.35738 * 119.88248 * 179.73863 * 21 20 19 23 23 C 1.42903 * 116.99964 * 179.97438 * 22 21 20 24 24 C 1.50697 * 109.47031 * 180.02562 * 23 22 21 25 25 N 1.34778 * 119.99932 * 180.02562 * 24 23 22 26 26 O 1.21276 * 120.00555 * 0.02562 * 24 23 22 27 27 C 1.39020 * 120.22793 * 359.48372 * 21 20 19 28 28 C 1.37658 * 120.11632 * 0.51634 * 27 21 20 29 29 H 1.07999 * 119.99997 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00092 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99847 * 180.02562 * 2 1 3 32 32 H 1.09012 * 109.47202 * 5.00501 * 3 2 1 33 33 H 1.08998 * 109.47925 * 245.00276 * 3 2 1 34 34 H 1.08997 * 109.47801 * 29.99823 * 5 4 3 35 35 H 1.09004 * 109.46957 * 149.99965 * 5 4 3 36 36 H 0.96993 * 120.00072 * 179.97438 * 9 8 6 37 37 H 1.08003 * 120.00067 * 359.97438 * 16 14 4 38 38 H 1.08003 * 119.99800 * 0.02562 * 17 16 14 39 39 H 1.07999 * 120.05751 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.94028 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47477 * 300.00730 * 23 22 21 42 42 H 1.09004 * 109.46657 * 60.00227 * 23 22 21 43 43 H 0.97001 * 119.99921 * 0.02562 * 25 24 23 44 44 H 0.97000 * 120.00481 * 179.97438 * 25 24 23 45 45 H 1.08007 * 119.94133 * 180.25300 * 27 21 20 46 46 H 1.08002 * 120.06360 * 179.76704 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8648 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3033 3.8369 1.6366 8 6 2.5193 4.0664 3.6088 9 7 1.9598 3.4655 4.6362 10 14 2.8724 5.8993 3.6775 11 1 3.5003 6.3306 2.4028 12 1 1.6018 6.6410 3.8796 13 1 3.7963 6.1836 4.8049 14 6 4.2497 0.8661 0.9824 15 8 5.0225 0.8880 1.9225 16 6 4.6841 0.3345 -0.3091 17 6 5.9417 -0.1323 -0.4583 18 6 6.3781 -0.6672 -1.7562 19 6 7.6818 -1.1514 -1.9136 20 6 8.0857 -1.6507 -3.1313 21 6 7.2028 -1.6695 -4.2049 22 8 7.6075 -2.1580 -5.4050 23 6 6.6500 -2.1485 -6.4657 24 6 7.2738 -2.7244 -7.7107 25 7 6.5525 -2.8155 -8.8456 26 8 8.4248 -3.1059 -7.6916 27 6 5.9052 -1.1946 -4.0524 28 6 5.4914 -0.6932 -2.8389 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0897 33 1 2.6213 1.4027 -0.9313 34 1 1.4887 1.6965 2.5460 35 1 3.0990 1.3601 3.2260 36 1 1.7316 3.9740 5.4300 37 1 3.9983 0.3148 -1.1432 38 1 6.6271 -0.1137 0.3762 39 1 8.3698 -1.1334 -1.0813 40 1 9.0916 -2.0243 -3.2539 41 1 5.7863 -2.7495 -6.1810 42 1 6.3319 -1.1239 -6.6587 43 1 5.6320 -2.5100 -8.8610 44 1 6.9541 -3.1859 -9.6471 45 1 5.2218 -1.2151 -4.8885 46 1 4.4842 -0.3210 -2.7224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492799872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:33 Heat of formation + Delta-G solvation = -67.513120 kcal Electronic energy + Delta-G solvation = -28071.227450 eV Core-core repulsion = 23926.357376 eV Total energy + Delta-G solvation = -4144.870074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44465 -40.74021 -40.18629 -38.52503 -37.21545 -35.20849 -34.78637 -34.46727 -33.64138 -32.11153 -30.80520 -29.68280 -28.69124 -26.89525 -25.71781 -24.25725 -23.66125 -21.89731 -21.51673 -20.86724 -19.57683 -19.41489 -18.74732 -18.59407 -18.14343 -17.46623 -17.36482 -17.26281 -16.52002 -16.33960 -16.07874 -16.00827 -15.50297 -15.39571 -15.36731 -14.96314 -14.57043 -14.33665 -14.25163 -14.11850 -13.71916 -13.66559 -13.44833 -13.15230 -12.95562 -12.85214 -12.60998 -12.57337 -12.36249 -12.24092 -12.17891 -11.78596 -11.64398 -11.11201 -10.84211 -10.73159 -10.68517 -10.64840 -10.28044 -10.02994 -9.47182 -8.79457 -8.21470 -6.36664 -0.37469 0.39519 1.05216 1.35420 1.37509 1.39185 1.48955 1.51111 1.69915 2.31685 2.47226 2.55464 2.85252 2.91732 3.07515 3.62934 3.69048 3.88326 3.90715 4.05726 4.10674 4.14285 4.18667 4.20324 4.30572 4.32337 4.43640 4.50556 4.65330 4.86750 4.97338 5.02149 5.09161 5.10108 5.19979 5.23689 5.28259 5.48369 5.56555 5.66819 5.69902 5.74847 5.79242 5.83763 5.99139 6.07184 6.27131 6.44675 6.71152 6.80358 7.26513 7.28657 7.49072 8.85475 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.001879 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.056669 B =14897.866428 C =15555.781400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.263 3.737 6 C -0.541 4.541 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.266 1.266 12 H -0.268 1.268 13 H -0.283 1.283 14 C 0.525 3.475 15 O -0.606 6.606 16 C -0.211 4.211 17 C -0.016 4.016 18 C -0.121 4.121 19 C -0.058 4.058 20 C -0.165 4.165 21 C 0.132 3.868 22 O -0.316 6.316 23 C 0.030 3.970 24 C 0.516 3.484 25 N -0.826 5.826 26 O -0.586 6.586 27 C -0.203 4.203 28 C -0.058 4.058 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.023 0.977 35 H -0.005 1.005 36 H 0.267 0.733 37 H 0.163 0.837 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.424 0.576 44 H 0.414 0.586 45 H 0.169 0.831 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 -12.394 -29.789 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.010 3.990 4 N -0.322 5.322 5 C 0.141 3.859 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.193 1.193 13 H -0.209 1.209 14 C 0.317 3.683 15 O -0.491 6.491 16 C -0.231 4.231 17 C -0.036 4.036 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.183 4.183 21 C 0.086 3.914 22 O -0.229 6.229 23 C -0.048 4.048 24 C 0.300 3.700 25 N -0.392 5.392 26 O -0.465 6.465 27 C -0.221 4.221 28 C -0.076 4.076 29 H 0.117 0.883 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.041 0.959 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.180 0.820 38 H 0.133 0.867 39 H 0.161 0.839 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.256 0.744 44 H 0.246 0.754 45 H 0.187 0.813 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.382 -12.593 -29.005 31.710 hybrid contribution -0.156 0.896 0.588 1.083 sum 2.226 -11.697 -28.417 30.811 Atomic orbital electron populations 1.24045 0.95500 1.02844 0.98329 1.23340 0.96765 0.98225 1.01848 1.20887 0.92538 0.96375 0.89197 1.48098 1.11632 1.59304 1.13166 1.18709 0.93869 0.92771 0.80503 1.21738 1.40465 0.94361 1.01422 0.92808 1.25874 0.94683 1.03841 0.94850 1.70061 1.42886 1.38067 1.05770 0.85355 0.78229 0.78963 0.78174 1.19062 1.19282 1.20855 1.19055 0.81699 0.78007 0.89541 1.90738 1.54261 1.59634 1.44442 1.22979 0.98659 1.05408 0.96090 1.22295 0.95071 0.90687 0.95543 1.18952 0.95320 1.04563 0.93257 1.21335 0.94949 0.94322 0.97032 1.20501 1.00792 1.05674 0.91342 1.19363 0.93627 0.93600 0.84806 1.86086 1.40620 1.78365 1.17835 1.22839 0.92193 1.05229 0.84517 1.20477 0.85794 0.77763 0.85958 1.43501 1.18002 1.65828 1.11918 1.90801 1.19991 1.50161 1.85548 1.21461 0.95200 1.05316 1.00173 1.21491 0.99904 0.95108 0.91105 0.88327 0.86557 0.86819 0.90466 0.87258 0.95940 0.98685 0.92424 0.82027 0.86717 0.83905 0.84477 0.85380 0.85447 0.74412 0.75390 0.81317 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 14.32 67.78 0.97 -2.91 16 2 C -0.18 -4.76 9.85 25.64 0.25 -4.50 16 3 C 0.13 4.09 5.56 85.63 0.48 4.56 16 4 N -0.59 -25.90 2.44 -835.68 -2.04 -27.94 16 5 C 0.26 14.57 5.16 85.64 0.44 15.01 16 6 C -0.54 -31.79 9.39 25.60 0.24 -31.55 16 7 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 8 C 0.01 0.37 5.46 84.66 0.46 0.83 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 10 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.52 22.92 7.60 86.33 0.66 23.58 16 15 O -0.61 -33.00 15.81 -4.41 -0.07 -33.07 16 16 C -0.21 -6.34 8.60 23.60 0.20 -6.13 16 17 C -0.02 -0.44 9.45 23.82 0.23 -0.22 16 18 C -0.12 -2.58 5.87 -20.14 -0.12 -2.69 16 19 C -0.06 -1.16 9.79 22.55 0.22 -0.94 16 20 C -0.16 -3.14 9.97 22.32 0.22 -2.92 16 21 C 0.13 2.25 6.70 22.64 0.15 2.41 16 22 O -0.32 -5.64 9.66 -71.58 -0.69 -6.33 16 23 C 0.03 0.23 5.21 71.24 0.37 0.60 16 24 C 0.52 6.23 8.18 87.66 0.72 6.95 16 25 N -0.83 -1.64 8.87 -173.54 -1.54 -3.18 16 26 O -0.59 -14.61 17.34 16.02 0.28 -14.33 16 27 C -0.20 -2.54 9.01 22.32 0.20 -2.34 16 28 C -0.06 -0.93 9.40 22.55 0.21 -0.72 16 29 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 30 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.08 2.53 7.72 -2.38 -0.02 2.51 16 33 H 0.11 2.57 6.09 -2.39 -0.01 2.56 16 34 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 35 H 0.00 -0.32 7.42 -2.38 -0.02 -0.34 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.16 3.45 4.21 -2.91 -0.01 3.44 16 38 H 0.11 3.62 7.52 -2.91 -0.02 3.60 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.13 0.15 7.64 -2.39 -0.02 0.13 16 42 H 0.13 0.17 7.66 -2.38 -0.02 0.15 16 43 H 0.42 -2.51 8.83 -92.71 -0.82 -3.33 16 44 H 0.41 0.59 8.93 -92.71 -0.83 -0.24 16 45 H 0.17 0.68 6.27 -2.91 -0.02 0.66 16 46 H 0.15 1.78 6.16 -2.91 -0.02 1.76 16 Total: -1.00 -91.70 400.49 3.54 -88.16 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -0.61 Total: 6.78 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.91 Total: -0.98 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -3.29 Total: -87.71 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.48 Total: -53.73 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -91.70 3.54 -88.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492799872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.648 kcal (2) G-P(sol) polarization free energy of solvation -91.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds