Wall clock time and date at job start Wed Apr 1 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.75595 * 2 1 4 4 C 1.52985 * 109.71835 * 239.36041 * 2 1 3 5 5 N 1.45645 * 110.77755 * 287.05497 * 4 2 1 6 6 C 1.33387 * 124.58767 * 338.12344 * 5 4 2 7 7 O 1.21282 * 118.48618 * 184.29320 * 6 5 4 8 8 C 1.50070 * 123.01049 * 4.07491 * 6 5 4 9 9 N 1.47048 * 109.09346 * 347.66629 * 8 6 5 10 10 C 1.34780 * 121.35117 * 222.65508 * 9 8 6 11 11 O 1.21720 * 119.99510 * 179.71634 * 10 9 8 12 12 C 1.46257 * 119.99936 * 359.71482 * 10 9 8 13 13 C 1.35020 * 119.99423 * 173.01828 * 12 10 9 14 14 C 1.46956 * 120.00492 * 348.98147 * 13 12 10 15 15 C 1.40024 * 120.09679 * 311.71091 * 14 13 12 16 16 C 1.37603 * 119.89463 * 179.69864 * 15 14 13 17 17 C 1.39173 * 120.10102 * 0.60466 * 16 15 14 18 18 O 1.35572 * 119.89787 * 179.70117 * 17 16 15 19 19 C 1.34777 * 116.99992 * 185.57518 * 18 17 16 20 20 H 1.08003 * 120.00177 * 354.90845 * 19 18 17 21 21 C 1.38724 * 120.00369 * 174.90561 * 19 18 17 22 22 N 1.31510 * 119.99460 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00360 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46899 * 90.00217 * 23 21 19 25 25 H 1.48500 * 109.47005 * 210.00002 * 23 21 19 26 26 H 1.48501 * 109.47151 * 330.00265 * 23 21 19 27 27 C 1.39176 * 120.20563 * 359.66756 * 17 16 15 28 28 C 1.37596 * 120.09785 * 0.02647 * 27 17 16 29 29 H 1.09002 * 109.46993 * 299.37455 * 1 2 3 30 30 H 1.08998 * 109.46868 * 59.36492 * 1 2 3 31 31 H 1.08995 * 109.47892 * 179.36778 * 1 2 3 32 32 H 1.09004 * 109.47457 * 180.63461 * 3 2 1 33 33 H 1.09006 * 109.46809 * 300.63420 * 3 2 1 34 34 H 1.08997 * 109.47191 * 60.63051 * 3 2 1 35 35 H 1.09000 * 109.21612 * 47.38916 * 4 2 1 36 36 H 1.09004 * 109.21834 * 166.76386 * 4 2 1 37 37 H 0.97001 * 117.71009 * 158.09544 * 5 4 2 38 38 H 1.09001 * 109.55306 * 227.72832 * 8 6 5 39 39 H 1.09003 * 109.37858 * 107.50175 * 8 6 5 40 40 H 1.08001 * 119.99725 * 353.01992 * 12 10 9 41 41 H 1.08002 * 119.99629 * 169.24645 * 13 12 10 42 42 H 1.07996 * 120.05443 * 359.97438 * 15 14 13 43 43 H 1.08001 * 119.94517 * 180.27487 * 16 15 14 44 44 H 0.96996 * 119.99691 * 179.97438 * 22 21 19 45 45 H 1.07996 * 119.95091 * 180.02562 * 27 17 16 46 46 H 1.08001 * 120.05195 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4399 0.0000 4 6 2.0461 -0.7340 -1.2391 5 7 1.8445 -2.1706 -1.1100 6 6 1.6866 -2.8120 0.0488 7 8 1.6051 -4.0219 0.0339 8 6 1.6101 -2.1053 1.3705 9 7 2.0268 -0.7064 1.1929 10 6 2.8353 -0.0971 2.0827 11 8 3.1691 1.0604 1.9086 12 6 3.3114 -0.8269 3.2574 13 6 4.2306 -0.2673 4.0729 14 6 4.9303 0.9574 3.6605 15 6 5.4997 1.0449 2.3843 16 6 6.1486 2.1960 2.0002 17 6 6.2503 3.2675 2.8826 18 8 6.8958 4.3973 2.5020 19 6 7.0608 5.3526 3.4384 20 1 6.6148 5.2344 4.4149 21 6 7.8036 6.4876 3.1480 22 7 8.3472 6.6312 1.9591 23 14 8.0318 7.8119 4.4455 24 1 9.2511 7.5201 5.2414 25 1 8.1771 9.1334 3.7838 26 1 6.8487 7.8349 5.3427 27 6 5.6908 3.1830 4.1541 28 6 5.0347 2.0383 4.5446 29 1 -0.3633 0.5041 0.8956 30 1 -0.3633 0.5237 -0.8842 31 1 -0.3635 -1.0275 -0.0113 32 1 3.1371 1.4346 -0.0114 33 1 1.6771 1.9589 -0.8843 34 1 1.6956 1.9522 0.8956 35 1 1.5112 -0.3741 -2.1180 36 1 3.1104 -0.5310 -1.3589 37 1 1.8231 -2.6980 -1.9239 38 1 2.2715 -2.5954 2.0851 39 1 0.5846 -2.1369 1.7387 40 1 2.9278 -1.8133 3.4724 41 1 4.4547 -0.7222 5.0265 42 1 5.4259 0.2120 1.7008 43 1 6.5842 2.2660 1.0144 44 1 8.8663 7.4250 1.7559 45 1 5.7718 4.0170 4.8354 46 1 4.6004 1.9736 5.5314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493422660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:58 Heat of formation + Delta-G solvation = -40.936115 kcal Electronic energy + Delta-G solvation = -30401.814214 eV Core-core repulsion = 26258.096606 eV Total energy + Delta-G solvation = -4143.717608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16674 -40.82556 -40.22198 -38.59417 -37.66390 -35.31204 -34.78235 -34.22293 -33.41196 -31.80175 -29.74347 -29.07329 -27.83587 -27.39295 -27.19883 -24.98106 -23.53579 -22.89892 -22.23714 -20.52731 -19.77067 -19.11375 -18.84842 -18.37088 -18.06535 -17.35297 -16.90781 -16.40455 -16.29622 -16.26331 -16.15260 -15.86407 -15.50371 -15.19640 -14.83783 -14.69676 -14.40830 -14.38466 -14.27071 -13.97487 -13.78327 -13.56579 -13.45488 -13.30869 -13.03172 -12.93814 -12.90725 -12.56966 -12.36912 -12.32643 -12.18215 -12.12661 -12.06371 -11.43417 -11.20347 -10.86360 -10.36359 -10.21556 -10.09021 -9.75852 -9.47935 -8.54882 -8.47222 -6.14007 0.03203 0.72964 1.08386 1.34566 1.43667 1.45728 1.52400 1.77304 2.17995 2.25352 2.44422 2.87635 3.24034 3.34814 3.47642 3.52805 3.72687 3.90478 3.94430 4.03234 4.14937 4.16855 4.19845 4.40443 4.45459 4.56247 4.58433 4.61579 4.70827 4.76980 4.79676 4.85412 4.99231 5.06761 5.10513 5.18753 5.24164 5.27465 5.33123 5.48292 5.61788 5.68510 5.74098 5.75144 5.83388 6.04148 6.17372 6.26292 6.36738 6.97205 7.05530 7.34338 7.79830 8.75991 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002562 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.274140 B =10924.975371 C =11535.423311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 C -0.119 4.119 4 C 0.106 3.894 5 N -0.705 5.705 6 C 0.514 3.486 7 O -0.589 6.589 8 C 0.096 3.904 9 N -0.611 5.611 10 C 0.537 3.463 11 O -0.535 6.535 12 C -0.239 4.239 13 C 0.011 3.989 14 C -0.150 4.150 15 C 0.004 3.996 16 C -0.212 4.212 17 C 0.126 3.874 18 O -0.231 6.231 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.254 4.254 28 C -0.049 4.049 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.064 0.936 37 H 0.407 0.593 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.273 0.727 45 H 0.117 0.883 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.260 -17.973 -0.811 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.300 3.700 7 O -0.470 6.470 8 C -0.028 4.028 9 N -0.347 5.347 10 C 0.329 3.671 11 O -0.413 6.413 12 C -0.259 4.259 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.014 4.014 16 C -0.231 4.231 17 C 0.076 3.924 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.273 4.273 28 C -0.067 4.067 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.244 0.756 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.184 0.816 41 H 0.184 0.816 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.135 0.865 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.899 -17.605 -1.051 24.426 hybrid contribution 0.442 0.833 -0.303 0.991 sum -16.457 -16.772 -1.354 23.537 Atomic orbital electron populations 1.22118 0.92003 1.02810 1.03791 1.21043 0.95453 0.92808 0.83767 1.21974 1.01312 0.93000 1.01367 1.21940 1.01976 0.78842 0.99096 1.45332 1.71808 1.09393 1.08978 1.20480 0.75010 0.87210 0.87275 1.90798 1.53044 1.15360 1.87808 1.21966 1.05412 0.80499 0.94964 1.48286 1.49824 1.12287 1.24302 1.18892 0.78058 0.86845 0.83297 1.91083 1.56784 1.18142 1.75333 1.23176 1.03444 1.02332 0.96989 1.22571 0.89918 0.90386 0.97973 1.18806 1.05283 0.96453 0.94544 1.20610 0.91952 0.94768 0.94093 1.20155 1.09562 0.93806 0.99616 1.19994 0.91550 0.86877 0.94010 1.83874 1.67349 1.23291 1.39261 1.21856 1.34187 0.97938 0.94979 0.88095 1.26627 0.94969 1.00328 1.00137 1.70171 1.33540 1.29507 1.22673 0.84579 0.79699 0.75562 0.76314 1.18655 1.19536 1.17656 1.21079 1.07978 1.01256 0.97015 1.21118 0.95080 0.91362 0.99116 0.92289 0.89307 0.91728 0.93037 0.91794 0.92894 0.86301 0.91754 0.75636 0.84508 0.85755 0.81570 0.81590 0.86315 0.88017 0.91809 0.86480 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.34 71.98 0.60 -1.19 16 2 C 0.15 2.49 1.05 3.45 0.00 2.50 16 3 C -0.12 -2.73 6.87 71.98 0.49 -2.23 16 4 C 0.11 1.34 6.05 86.54 0.52 1.86 16 5 N -0.70 -9.46 5.32 -467.51 -2.49 -11.94 16 6 C 0.51 8.84 7.28 87.68 0.64 9.47 16 7 O -0.59 -14.50 17.80 -3.04 -0.05 -14.55 16 8 C 0.10 1.27 5.55 85.33 0.47 1.74 16 9 N -0.61 -10.74 2.76 -782.27 -2.16 -12.90 16 10 C 0.54 12.62 6.78 86.33 0.59 13.20 16 11 O -0.54 -17.33 8.02 -4.41 -0.04 -17.36 16 12 C -0.24 -4.35 9.16 23.61 0.22 -4.13 16 13 C 0.01 0.23 9.77 23.81 0.23 0.46 16 14 C -0.15 -4.85 4.34 -20.13 -0.09 -4.93 16 15 C 0.00 0.15 6.77 22.55 0.15 0.30 16 16 C -0.21 -9.78 9.97 22.34 0.22 -9.56 16 17 C 0.13 6.63 6.66 22.72 0.15 6.78 16 18 O -0.23 -14.46 9.74 -20.25 -0.20 -14.66 16 19 C -0.41 -24.74 9.48 67.94 0.64 -24.09 16 20 H 0.10 5.55 5.18 -2.91 -0.02 5.54 16 21 C -0.02 -1.34 5.49 84.86 0.47 -0.88 16 22 N -0.92 -57.55 13.67 21.62 0.30 -57.26 16 23 Si 1.02 43.52 29.55 68.60 2.03 45.54 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 27 C -0.25 -11.56 9.14 22.34 0.20 -11.35 16 28 C -0.05 -1.74 9.78 22.55 0.22 -1.51 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.68 6.83 -2.39 -0.02 0.67 16 32 H 0.05 1.51 6.70 -2.39 -0.02 1.50 16 33 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.50 6.87 -2.39 -0.02 1.49 16 35 H 0.12 0.84 8.08 -2.39 -0.02 0.82 16 36 H 0.06 1.00 8.07 -2.38 -0.02 0.98 16 37 H 0.41 4.52 8.80 -92.71 -0.82 3.71 16 38 H 0.14 1.41 5.75 -2.39 -0.01 1.40 16 39 H 0.12 1.14 7.85 -2.39 -0.02 1.12 16 40 H 0.17 1.65 6.18 -2.91 -0.02 1.63 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.12 3.87 7.46 -2.91 -0.02 3.85 16 43 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 45 H 0.12 5.39 5.62 -2.91 -0.02 5.37 16 46 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -83.11 370.98 3.35 -79.76 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.22 Total: 26.94 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 5.74 Total: -23.57 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -4.35 Total: -82.10 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.29 Total: -46.58 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -83.11 3.35 -79.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493422660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.827 kcal (2) G-P(sol) polarization free energy of solvation -83.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds