Wall clock time and date at job start Wed Apr 1 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46831 * 2 1 4 4 N 1.46496 * 109.46879 * 119.99440 * 2 1 3 5 5 C 1.46499 * 120.00266 * 294.94383 * 4 2 1 6 6 C 1.50700 * 109.47073 * 263.04293 * 5 4 2 7 7 H 1.08000 * 120.00278 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00291 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99568 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00271 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46896 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47009 * 119.99824 * 10 8 6 13 13 H 1.48494 * 109.47394 * 239.99994 * 10 8 6 14 14 C 1.34784 * 119.99949 * 114.94273 * 4 2 1 15 15 O 1.21367 * 119.99513 * 3.93721 * 14 4 2 16 16 C 1.49319 * 120.00115 * 183.94134 * 14 4 2 17 17 O 1.21399 * 120.00181 * 354.87720 * 16 14 4 18 18 N 1.34775 * 120.00000 * 175.15743 * 16 14 4 19 19 C 1.40481 * 120.00438 * 179.72103 * 18 16 14 20 20 C 1.40348 * 126.11004 * 359.69117 * 19 18 16 21 21 N 1.30822 * 108.20635 * 179.87433 * 20 19 18 22 22 N 1.40055 * 108.36862 * 0.38266 * 21 20 19 23 23 C 1.46500 * 125.99924 * 179.73248 * 22 21 20 24 24 C 1.53004 * 109.47013 * 305.02596 * 23 22 21 25 25 F 1.39897 * 109.46880 * 174.99799 * 24 23 22 26 26 F 1.39903 * 109.46901 * 294.99703 * 24 23 22 27 27 C 1.35229 * 108.00956 * 359.75326 * 22 21 20 28 28 H 1.08993 * 109.47509 * 300.00229 * 1 2 3 29 29 H 1.09003 * 109.46932 * 60.00459 * 1 2 3 30 30 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47509 * 239.99771 * 2 1 3 32 32 H 1.09003 * 109.46804 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46877 * 299.99589 * 3 2 1 34 34 H 1.08997 * 109.46907 * 59.99984 * 3 2 1 35 35 H 1.08994 * 109.47323 * 23.04510 * 5 4 2 36 36 H 1.09003 * 109.47110 * 143.04673 * 5 4 2 37 37 H 0.96997 * 119.99767 * 180.02562 * 9 8 6 38 38 H 0.97004 * 120.00132 * 359.72128 * 18 16 14 39 39 H 1.07991 * 125.89612 * 0.03858 * 20 19 18 40 40 H 1.09001 * 109.46844 * 65.01813 * 23 22 21 41 41 H 1.08994 * 109.47478 * 185.02107 * 23 22 21 42 42 H 1.08997 * 109.47290 * 54.99390 * 24 23 22 43 43 H 1.08004 * 126.18072 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7580 -0.1286 2.5239 6 6 2.9583 0.6605 2.9796 7 1 3.8283 0.7356 2.3440 8 6 2.9464 1.2857 4.2084 9 7 1.8873 1.1938 4.9826 10 14 4.4346 2.2632 4.7735 11 1 5.4866 2.2126 3.7267 12 1 4.0390 3.6751 5.0092 13 1 4.9608 1.6796 6.0335 14 6 2.7070 -1.8428 1.0753 15 8 2.9846 -2.2711 -0.0259 16 6 3.1285 -2.5923 2.2960 17 8 2.9332 -2.1188 3.3967 18 7 3.7307 -3.7920 2.1758 19 6 4.1325 -4.4946 3.3240 20 6 3.9767 -4.0675 4.6518 21 7 4.4695 -4.9895 5.4382 22 7 4.9637 -6.0306 4.6422 23 6 5.6040 -7.2558 5.1270 24 6 6.7819 -6.8915 6.0330 25 9 7.3224 -8.0571 6.5864 26 9 7.7621 -6.2340 5.2817 27 6 4.7465 -5.7062 3.3475 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.8886 0.5271 2.4769 36 1 1.5656 -0.9371 3.2293 37 1 1.8787 1.6340 5.8469 38 1 3.8868 -4.1704 1.2963 39 1 3.5254 -3.1393 4.9695 40 1 4.8808 -7.8450 5.6908 41 1 5.9644 -7.8376 4.2787 42 1 6.4364 -6.2360 6.8323 43 1 5.0127 -6.3027 2.4874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527104618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:19 Heat of formation + Delta-G solvation = -91.454340 kcal Electronic energy + Delta-G solvation = -30587.486449 eV Core-core repulsion = 25919.641428 eV Total energy + Delta-G solvation = -4667.845022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.08553 -48.10285 -42.54158 -41.52016 -39.52363 -37.74597 -36.01028 -34.76835 -34.47846 -32.85245 -31.02734 -29.35813 -29.09273 -27.96309 -26.03958 -24.94048 -24.74411 -22.88677 -22.28625 -21.25232 -20.18596 -18.96860 -18.87393 -18.61152 -18.37355 -18.13016 -17.85535 -17.25410 -16.74296 -16.65104 -16.46854 -15.92356 -15.81465 -15.22181 -15.09504 -14.95963 -14.82934 -14.70490 -14.46453 -14.26336 -14.09710 -13.92096 -13.84653 -13.52546 -13.32157 -13.26640 -12.96936 -12.75066 -12.70248 -12.41920 -12.32801 -12.24076 -11.88752 -11.82351 -11.77714 -11.58271 -11.48312 -10.60609 -10.51530 -10.04869 -9.53268 -8.80088 -8.09188 -6.15407 0.36580 0.79460 1.13874 1.37470 1.41194 1.49373 1.59925 1.70226 2.40258 2.46926 2.53836 2.73202 3.20064 3.24827 3.44040 3.48762 3.60993 3.87956 3.92944 4.04270 4.19053 4.25904 4.35540 4.41886 4.51326 4.57759 4.67108 4.84127 4.93308 5.00247 5.01392 5.15549 5.31043 5.48830 5.52507 5.61873 5.72546 5.84220 5.91087 6.18210 6.23216 6.40326 6.52752 6.88415 6.93526 7.20116 7.49657 8.98916 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.012099 B = 0.003161 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.753098 B = 8857.160996 C =10423.967848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 C -0.144 4.144 4 N -0.560 5.560 5 C 0.243 3.757 6 C -0.507 4.507 7 H 0.042 0.958 8 C 0.025 3.975 9 N -0.919 5.919 10 Si 0.942 3.058 11 H -0.274 1.274 12 H -0.275 1.275 13 H -0.287 1.287 14 C 0.507 3.493 15 O -0.564 6.564 16 C 0.489 3.511 17 O -0.484 6.484 18 N -0.610 5.610 19 C -0.018 4.018 20 C 0.042 3.958 21 N -0.310 5.310 22 N -0.372 5.372 23 C 0.096 3.904 24 C 0.251 3.749 25 F -0.198 7.198 26 F -0.215 7.215 27 C 0.059 3.941 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.054 0.946 37 H 0.261 0.739 38 H 0.429 0.571 39 H 0.180 0.820 40 H 0.141 0.859 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -17.286 -5.393 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.202 4.202 4 N -0.290 5.290 5 C 0.123 3.877 6 C -0.546 4.546 7 H 0.060 0.940 8 C -0.175 4.175 9 N -0.560 5.560 10 Si 0.769 3.231 11 H -0.199 1.199 12 H -0.201 1.201 13 H -0.214 1.214 14 C 0.290 3.710 15 O -0.446 6.446 16 C 0.271 3.729 17 O -0.355 6.355 18 N -0.259 5.259 19 C -0.123 4.123 20 C -0.144 4.144 21 N -0.133 5.133 22 N -0.157 5.157 23 C -0.026 4.026 24 C 0.197 3.803 25 F -0.179 7.179 26 F -0.197 7.197 27 C -0.089 4.089 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.268 0.732 39 H 0.197 0.803 40 H 0.159 0.841 41 H 0.175 0.825 42 H 0.138 0.862 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.269 -17.495 -3.776 18.400 hybrid contribution 0.777 1.047 -0.351 1.350 sum 5.046 -16.448 -4.126 17.693 Atomic orbital electron populations 1.22078 0.93276 1.02232 1.03243 1.21347 0.95459 0.93774 0.87357 1.21982 1.00546 0.94986 1.02711 1.48384 1.49785 1.20500 1.10309 1.19549 0.95736 0.94726 0.77723 1.21364 1.00892 1.30424 1.01879 0.94009 1.25415 0.97950 0.97595 0.96508 1.70016 1.29873 1.45024 1.11050 0.85758 0.80550 0.78821 0.77986 1.19871 1.20100 1.21374 1.19847 0.79926 0.82689 0.88548 1.90622 1.57348 1.69452 1.27194 1.20306 0.80291 0.82212 0.90104 1.90819 1.50960 1.66001 1.27763 1.42246 1.57367 1.17732 1.08559 1.17907 1.11302 0.95862 0.87192 1.24380 0.99760 0.99298 0.90997 1.77303 1.18904 0.97800 1.19252 1.48099 1.46802 1.16636 1.04123 1.22942 0.93977 0.82776 1.02856 1.22258 0.83843 0.81471 0.92756 1.93009 1.87664 1.50976 1.86265 1.93002 1.66316 1.81733 1.78641 1.22425 1.01286 0.95766 0.89417 0.93167 0.88566 0.92724 0.88557 0.94155 0.89086 0.93039 0.96100 0.92831 0.92990 0.73238 0.80298 0.84100 0.82520 0.86242 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.26 71.98 0.67 -3.68 16 2 C 0.12 4.23 3.22 45.00 0.15 4.37 16 3 C -0.14 -4.85 8.66 71.98 0.62 -4.23 16 4 N -0.56 -23.48 2.38 -803.85 -1.91 -25.39 16 5 C 0.24 12.05 3.91 85.63 0.33 12.38 16 6 C -0.51 -27.51 7.47 25.60 0.19 -27.32 16 7 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 8 C 0.02 1.37 5.46 84.65 0.46 1.83 16 9 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 10 Si 0.94 45.03 29.54 68.60 2.03 47.06 16 11 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 14 C 0.51 20.69 7.66 87.23 0.67 21.36 16 15 O -0.56 -22.26 15.82 -3.30 -0.05 -22.31 16 16 C 0.49 19.54 7.74 87.23 0.67 20.22 16 17 O -0.48 -22.85 9.54 -3.40 -0.03 -22.88 16 18 N -0.61 -18.62 5.45 -305.43 -1.67 -20.29 16 19 C -0.02 -0.54 6.90 37.71 0.26 -0.28 16 20 C 0.04 1.48 10.84 85.36 0.93 2.41 16 21 N -0.31 -9.35 12.32 -56.72 -0.70 -10.04 16 22 N -0.37 -7.58 3.67 -347.39 -1.27 -8.85 16 23 C 0.10 1.03 6.70 86.38 0.58 1.61 16 24 C 0.25 3.86 5.42 71.98 0.39 4.25 16 25 F -0.20 -3.05 17.34 44.97 0.78 -2.27 16 26 F -0.22 -4.64 17.32 44.97 0.78 -3.86 16 27 C 0.06 1.13 11.49 83.61 0.96 2.09 16 28 H 0.05 1.61 6.92 -2.39 -0.02 1.60 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 3.20 6.91 -2.39 -0.02 3.18 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.98 7.09 -2.39 -0.02 1.97 16 35 H 0.02 1.09 6.48 -2.39 -0.02 1.07 16 36 H 0.05 2.95 5.38 -2.43 -0.01 2.94 16 37 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.43 10.43 8.30 -92.71 -0.77 9.66 16 39 H 0.18 7.62 5.92 -2.91 -0.02 7.60 16 40 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.16 0.56 8.07 -2.39 -0.02 0.54 16 42 H 0.12 1.96 8.05 -2.39 -0.02 1.94 16 43 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -73.24 370.73 5.42 -67.82 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.30 Total: 19.40 kcal Atomic # 6 Polarization: 28.12 SS G_CDS: 6.88 Total: 35.01 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.26 Total: -117.96 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.08 Total: -45.19 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 1.56 Total: -6.14 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.24 5.42 -67.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527104618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.636 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds