Wall clock time and date at job start Wed Apr 1 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 H 1.08998 * 109.47523 * 54.99811 * 3 2 1 5 5 C 1.50705 * 109.47607 * 175.00091 * 3 2 1 6 6 H 1.07993 * 119.99943 * 119.99983 * 5 3 2 7 7 C 1.37871 * 119.99733 * 300.00079 * 5 3 2 8 8 N 1.31520 * 119.99954 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47149 * 89.99408 * 9 7 5 11 11 H 1.48497 * 109.47301 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.46769 * 329.99766 * 9 7 5 13 13 N 1.46505 * 109.47149 * 295.00196 * 3 2 1 14 14 C 1.34777 * 120.00090 * 84.99611 * 13 3 2 15 15 O 1.21280 * 120.00137 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99845 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.47108 * 180.02562 * 16 14 13 18 18 C 1.35403 * 124.77271 * 264.97749 * 17 16 14 19 19 C 1.36480 * 109.75837 * 180.02562 * 18 17 16 20 20 C 1.46741 * 126.77385 * 179.97438 * 19 18 17 21 21 O 1.21601 * 119.99585 * 179.97438 * 20 19 18 22 22 O 1.34835 * 120.00256 * 359.96448 * 20 19 18 23 23 C 1.45207 * 116.99941 * 180.02562 * 22 20 19 24 24 C 1.47468 * 106.44071 * 359.97438 * 19 18 17 25 25 C 1.39263 * 134.00339 * 180.02562 * 24 19 18 26 26 C 1.37765 * 119.67143 * 180.02562 * 25 24 19 27 27 C 1.38743 * 120.29516 * 0.02562 * 26 25 24 28 28 C 1.37769 * 120.63620 * 359.97438 * 27 26 25 29 29 C 1.37984 * 124.77470 * 84.99733 * 17 16 14 30 30 H 1.09010 * 109.46513 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47275 * 299.99467 * 1 2 3 32 32 H 1.08997 * 109.47482 * 60.00533 * 1 2 3 33 33 H 1.08999 * 109.47283 * 239.99625 * 2 1 3 34 34 H 1.08997 * 109.47482 * 119.99467 * 2 1 3 35 35 H 0.97006 * 119.99699 * 179.97438 * 8 7 5 36 36 H 0.97008 * 119.99699 * 265.00276 * 13 3 2 37 37 H 1.08996 * 109.47191 * 59.99954 * 16 14 13 38 38 H 1.09010 * 109.46873 * 299.99987 * 16 14 13 39 39 H 1.07994 * 125.12022 * 0.03253 * 18 17 16 40 40 H 1.08997 * 109.46870 * 60.00399 * 23 22 20 41 41 H 1.08996 * 109.47277 * 180.02562 * 23 22 20 42 42 H 1.08994 * 109.46980 * 300.00393 * 23 22 20 43 43 H 1.08002 * 120.15947 * 0.30142 * 25 24 19 44 44 H 1.07998 * 119.84742 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.68181 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.03281 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8815 1.3818 10 1 6.4415 2.1145 2.0848 11 1 6.4396 -0.3095 2.1549 12 1 6.6135 0.8419 0.0279 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3394 2.6326 -0.4341 16 6 0.0361 3.3376 -2.6549 17 7 -1.3224 3.8708 -2.5268 18 6 -2.4453 3.2270 -2.9242 19 6 -3.5383 4.0010 -2.6617 20 6 -4.9394 3.6662 -2.9409 21 8 -5.8213 4.4526 -2.6535 22 8 -5.2490 2.4868 -3.5164 23 6 -6.6553 2.2229 -3.7637 24 6 -3.0331 5.2402 -2.0420 25 6 -3.6393 6.3969 -1.5584 26 6 -2.8628 7.4017 -1.0243 27 6 -1.4833 7.2650 -0.9676 28 6 -0.8705 6.1260 -1.4424 29 6 -1.6375 5.0999 -1.9846 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0609 2.9499 36 1 2.2719 2.1231 -1.9979 37 1 0.0672 2.6129 -3.4685 38 1 0.7275 4.1530 -2.8679 39 1 -2.4720 2.2484 -3.3801 40 1 -7.0569 2.9876 -4.4287 41 1 -6.7650 1.2430 -4.2282 42 1 -7.1997 2.2401 -2.8196 43 1 -4.7133 6.5037 -1.5979 44 1 -3.3300 8.2997 -0.6481 45 1 -0.8840 8.0591 -0.5472 46 1 0.2041 6.0301 -1.3938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547274336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:10 Heat of formation + Delta-G solvation = -59.789048 kcal Electronic energy + Delta-G solvation = -29949.278241 eV Core-core repulsion = 25804.743108 eV Total energy + Delta-G solvation = -4144.535133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67757 -39.95942 -39.09401 -37.06119 -36.26462 -35.21405 -33.13008 -32.49771 -31.16936 -30.28634 -29.41470 -28.28952 -27.34970 -26.41816 -23.39127 -23.14070 -22.61127 -21.59184 -20.43162 -19.97774 -19.53335 -17.87148 -17.48780 -17.19120 -16.34781 -16.28943 -16.12460 -15.82287 -15.39485 -15.29408 -14.87388 -14.56393 -14.15058 -13.87256 -13.86912 -13.36453 -13.28946 -13.05577 -12.84156 -12.79635 -12.67333 -12.13793 -11.92075 -11.67081 -11.59483 -11.51042 -11.34781 -11.07586 -11.01999 -10.93348 -10.82571 -10.42514 -10.41312 -10.30487 -9.79653 -9.73036 -9.24631 -9.16864 -8.60549 -8.25861 -8.02154 -7.75597 -6.21825 -4.32353 0.93334 1.53484 1.86124 2.42848 2.81450 3.04550 3.17763 3.18333 3.25251 3.26170 3.83287 3.98733 4.27330 4.51619 4.56690 4.68109 4.91822 4.98937 5.00879 5.08198 5.09458 5.10278 5.17419 5.24381 5.33815 5.47286 5.56582 5.67869 5.68383 6.04407 6.28312 6.32865 6.37129 6.42276 6.53843 6.56385 6.65486 6.68586 6.90097 6.97983 7.08541 7.13263 7.21009 7.27562 7.49198 7.59281 7.77215 7.88744 8.06408 8.44094 8.63571 8.89710 9.35125 10.83336 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.002813 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.856671 B = 9950.227836 C =11263.919999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.479 3.521 15 O -0.525 6.525 16 C 0.077 3.923 17 N -0.443 5.443 18 C 0.159 3.841 19 C -0.235 4.235 20 C 0.543 3.457 21 O -0.519 6.519 22 O -0.362 6.362 23 C 0.040 3.960 24 C -0.055 4.055 25 C -0.074 4.074 26 C -0.138 4.138 27 C -0.103 4.103 28 C -0.112 4.112 29 C 0.101 3.899 30 H 0.024 0.976 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.266 0.734 36 H 0.389 0.611 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.184 0.816 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 6.792 -13.561 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.351 5.351 14 C 0.261 3.739 15 O -0.402 6.402 16 C -0.048 4.048 17 N -0.122 5.122 18 C 0.025 3.975 19 C -0.244 4.244 20 C 0.390 3.610 21 O -0.409 6.409 22 O -0.279 6.279 23 C -0.054 4.054 24 C -0.059 4.059 25 C -0.092 4.092 26 C -0.157 4.157 27 C -0.123 4.123 28 C -0.133 4.133 29 C -0.002 4.002 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.201 0.799 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.344 6.759 -12.615 18.262 hybrid contribution 1.227 -0.260 -0.179 1.267 sum -10.117 6.499 -12.794 17.558 Atomic orbital electron populations 1.21824 0.98304 0.98146 1.01047 1.21942 0.92563 0.99719 1.02430 1.18826 0.94329 0.89159 0.80587 0.93268 1.21189 0.90516 1.39416 1.06446 0.92043 1.24888 0.98695 0.94694 0.95347 1.69892 1.35240 1.37318 1.09294 0.86446 0.84686 0.77740 0.78227 1.20527 1.21014 1.19837 1.46495 1.14063 1.55670 1.18897 1.20459 0.83724 0.80621 0.89084 1.90779 1.51084 1.58760 1.39585 1.21945 0.82208 1.01296 0.99351 1.43285 1.05878 1.13892 1.49164 1.22223 0.83904 0.96762 0.94574 1.18835 0.89211 0.98203 1.18151 1.19966 0.88431 0.78874 0.73753 1.90809 1.49540 1.49840 1.50675 1.86560 1.29733 1.37979 1.73610 1.23200 0.78556 1.01926 1.01742 1.18572 0.91175 0.94119 1.02029 1.20587 1.00180 0.91482 0.96978 1.20940 0.93655 0.99225 1.01859 1.20803 0.94786 0.96948 0.99719 1.20061 0.99194 0.92557 1.01446 1.18129 0.93686 0.87103 1.01279 0.95720 0.93177 0.94592 0.94946 0.88177 0.92441 0.77811 0.86194 0.86563 0.79936 0.92068 0.88258 0.91982 0.85241 0.85854 0.85581 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.57 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.34 8.73 -34.44 -0.30 -13.64 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.86 11.29 55.43 0.63 -23.24 16 9 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 N -0.70 -12.62 5.02 -54.93 -0.28 -12.90 16 14 C 0.48 8.14 6.47 -10.98 -0.07 8.06 16 15 O -0.53 -11.35 13.56 5.56 0.08 -11.28 16 16 C 0.08 0.89 6.43 -5.19 -0.03 0.85 16 17 N -0.44 -5.98 2.23 -115.49 -0.26 -6.24 16 18 C 0.16 2.05 11.04 -16.61 -0.18 1.87 16 19 C -0.24 -3.49 6.27 -103.34 -0.65 -4.14 16 20 C 0.54 8.02 7.93 34.17 0.27 8.29 16 21 O -0.52 -8.65 15.95 -19.34 -0.31 -8.96 16 22 O -0.36 -4.45 10.40 -40.86 -0.42 -4.88 16 23 C 0.04 0.35 10.57 101.05 1.07 1.42 16 24 C -0.06 -0.87 6.27 -104.95 -0.66 -1.52 16 25 C -0.07 -1.06 9.85 -39.37 -0.39 -1.45 16 26 C -0.14 -1.71 10.03 -39.57 -0.40 -2.11 16 27 C -0.10 -1.27 10.01 -39.57 -0.40 -1.67 16 28 C -0.11 -1.55 9.97 -39.43 -0.39 -1.94 16 29 C 0.10 1.51 6.78 -83.97 -0.57 0.94 16 30 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 32 H 0.04 0.72 5.65 -51.93 -0.29 0.42 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.39 5.77 8.54 -40.82 -0.35 5.42 16 37 H 0.12 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.12 1.06 8.14 -51.92 -0.42 0.63 16 39 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.13 1.82 7.45 -52.49 -0.39 1.43 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -33.21 389.39 -8.83 -42.04 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.33 Total: 7.61 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.78 Total: -2.82 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.09 Total: -42.38 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.66 Total: -25.12 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.21 -8.83 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.752 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds