Wall clock time and date at job start Wed Apr 1 2020 03:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 H 1.08998 * 109.47523 * 54.99811 * 3 2 1 5 5 C 1.50705 * 109.47607 * 175.00091 * 3 2 1 6 6 H 1.07993 * 119.99943 * 119.99983 * 5 3 2 7 7 C 1.37871 * 119.99733 * 300.00079 * 5 3 2 8 8 N 1.31520 * 119.99954 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47149 * 89.99408 * 9 7 5 11 11 H 1.48497 * 109.47301 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.46769 * 329.99766 * 9 7 5 13 13 N 1.46505 * 109.47149 * 295.00196 * 3 2 1 14 14 C 1.34777 * 120.00090 * 84.99611 * 13 3 2 15 15 O 1.21280 * 120.00137 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99845 * 180.02562 * 14 13 3 17 17 N 1.46496 * 109.47108 * 180.02562 * 16 14 13 18 18 C 1.35403 * 124.77271 * 264.97749 * 17 16 14 19 19 C 1.36480 * 109.75837 * 180.02562 * 18 17 16 20 20 C 1.46741 * 126.77385 * 179.97438 * 19 18 17 21 21 O 1.21601 * 119.99585 * 179.97438 * 20 19 18 22 22 O 1.34835 * 120.00256 * 359.96448 * 20 19 18 23 23 C 1.45207 * 116.99941 * 180.02562 * 22 20 19 24 24 C 1.47468 * 106.44071 * 359.97438 * 19 18 17 25 25 C 1.39263 * 134.00339 * 180.02562 * 24 19 18 26 26 C 1.37765 * 119.67143 * 180.02562 * 25 24 19 27 27 C 1.38743 * 120.29516 * 0.02562 * 26 25 24 28 28 C 1.37769 * 120.63620 * 359.97438 * 27 26 25 29 29 C 1.37984 * 124.77470 * 84.99733 * 17 16 14 30 30 H 1.09010 * 109.46513 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47275 * 299.99467 * 1 2 3 32 32 H 1.08997 * 109.47482 * 60.00533 * 1 2 3 33 33 H 1.08999 * 109.47283 * 239.99625 * 2 1 3 34 34 H 1.08997 * 109.47482 * 119.99467 * 2 1 3 35 35 H 0.97006 * 119.99699 * 179.97438 * 8 7 5 36 36 H 0.97008 * 119.99699 * 265.00276 * 13 3 2 37 37 H 1.08996 * 109.47191 * 59.99954 * 16 14 13 38 38 H 1.09010 * 109.46873 * 299.99987 * 16 14 13 39 39 H 1.07994 * 125.12022 * 0.03253 * 18 17 16 40 40 H 1.08997 * 109.46870 * 60.00399 * 23 22 20 41 41 H 1.08996 * 109.47277 * 180.02562 * 23 22 20 42 42 H 1.08994 * 109.46980 * 300.00393 * 23 22 20 43 43 H 1.08002 * 120.15947 * 0.30142 * 25 24 19 44 44 H 1.07998 * 119.84742 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.68181 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.03281 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8815 1.3818 10 1 6.4415 2.1145 2.0848 11 1 6.4396 -0.3095 2.1549 12 1 6.6135 0.8419 0.0279 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3394 2.6326 -0.4341 16 6 0.0361 3.3376 -2.6549 17 7 -1.3224 3.8708 -2.5268 18 6 -2.4453 3.2270 -2.9242 19 6 -3.5383 4.0010 -2.6617 20 6 -4.9394 3.6662 -2.9409 21 8 -5.8213 4.4526 -2.6535 22 8 -5.2490 2.4868 -3.5164 23 6 -6.6553 2.2229 -3.7637 24 6 -3.0331 5.2402 -2.0420 25 6 -3.6393 6.3969 -1.5584 26 6 -2.8628 7.4017 -1.0243 27 6 -1.4833 7.2650 -0.9676 28 6 -0.8705 6.1260 -1.4424 29 6 -1.6375 5.0999 -1.9846 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0609 2.9499 36 1 2.2719 2.1231 -1.9979 37 1 0.0672 2.6129 -3.4685 38 1 0.7275 4.1530 -2.8679 39 1 -2.4720 2.2484 -3.3801 40 1 -7.0569 2.9876 -4.4287 41 1 -6.7650 1.2430 -4.2282 42 1 -7.1997 2.2401 -2.8196 43 1 -4.7133 6.5037 -1.5979 44 1 -3.3300 8.2997 -0.6481 45 1 -0.8840 8.0591 -0.5472 46 1 0.2041 6.0301 -1.3938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547274336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:09 Heat of formation + Delta-G solvation = -79.254004 kcal Electronic energy + Delta-G solvation = -29950.122305 eV Core-core repulsion = 25804.743108 eV Total energy + Delta-G solvation = -4145.379197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.70109 -41.02940 -40.49073 -38.10066 -37.30426 -36.90785 -34.39934 -34.08880 -32.82107 -31.37619 -30.39466 -29.51361 -28.65373 -27.61700 -25.04639 -24.25496 -23.73418 -22.77052 -21.81730 -21.17468 -20.99581 -19.18816 -18.71716 -18.22590 -17.70242 -17.33822 -17.25234 -17.19187 -16.75511 -16.39565 -16.26174 -15.95968 -15.44674 -15.01151 -14.94714 -14.58923 -14.52063 -14.31127 -14.16333 -14.03347 -13.71401 -13.55983 -13.18119 -13.01907 -12.93786 -12.86762 -12.69678 -12.62806 -12.57459 -12.16231 -12.07997 -12.03368 -11.74768 -11.58378 -11.50331 -11.06050 -10.95789 -10.60152 -10.49368 -9.65755 -9.28064 -8.80528 -8.15767 -6.33101 -0.08750 0.49629 0.79948 1.44269 1.45309 1.47213 1.56056 1.74920 1.88128 2.11577 2.37126 2.63985 2.93472 3.14482 3.56560 3.58826 3.79335 3.93115 4.05132 4.15956 4.17723 4.26587 4.36388 4.37430 4.44293 4.48928 4.57058 4.57500 4.64170 4.73465 4.75827 4.77359 5.04639 5.05655 5.26060 5.36266 5.43019 5.43615 5.54100 5.56105 5.61246 5.63429 5.66487 5.79552 5.90371 6.04797 6.12956 6.17763 6.76092 6.83511 6.94555 7.34399 7.55886 8.89118 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.002813 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.856671 B = 9950.227836 C =11263.919999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.257 1.257 13 N -0.697 5.697 14 C 0.478 3.522 15 O -0.576 6.576 16 C 0.088 3.912 17 N -0.446 5.446 18 C 0.174 3.826 19 C -0.267 4.267 20 C 0.542 3.458 21 O -0.550 6.550 22 O -0.360 6.360 23 C 0.032 3.968 24 C -0.083 4.083 25 C -0.097 4.097 26 C -0.134 4.134 27 C -0.106 4.106 28 C -0.125 4.125 29 C 0.081 3.919 30 H 0.043 0.957 31 H 0.017 0.983 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.263 0.737 36 H 0.409 0.591 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.218 0.782 40 H 0.063 0.937 41 H 0.135 0.865 42 H 0.056 0.944 43 H 0.122 0.878 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 6.801 -16.037 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.181 1.181 13 N -0.348 5.348 14 C 0.263 3.737 15 O -0.456 6.456 16 C -0.036 4.036 17 N -0.124 5.124 18 C 0.039 3.961 19 C -0.276 4.276 20 C 0.391 3.609 21 O -0.443 6.443 22 O -0.277 6.277 23 C -0.061 4.061 24 C -0.087 4.087 25 C -0.115 4.115 26 C -0.152 4.152 27 C -0.124 4.124 28 C -0.145 4.145 29 C -0.022 4.022 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.245 0.755 37 H 0.187 0.813 38 H 0.165 0.835 39 H 0.235 0.765 40 H 0.082 0.918 41 H 0.153 0.847 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.168 0.832 45 H 0.172 0.828 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.954 6.775 -15.153 19.355 hybrid contribution 0.733 -0.239 0.610 0.983 sum -9.222 6.535 -14.543 18.419 Atomic orbital electron populations 1.21653 0.97067 0.98989 1.00097 1.21781 0.93549 0.99259 1.01417 1.18302 0.93480 0.89037 0.81339 0.98849 1.21593 0.91452 1.38628 1.06595 0.90578 1.25755 1.03048 0.94543 0.95204 1.70060 1.37015 1.38501 1.09896 0.85424 0.79484 0.77207 0.78702 1.20692 1.21391 1.18105 1.46159 1.15232 1.55650 1.17714 1.21380 0.82404 0.79462 0.90472 1.90776 1.52396 1.60384 1.42050 1.22115 0.81684 1.02968 0.96818 1.43445 1.06714 1.13456 1.48804 1.22743 0.83098 0.97269 0.92968 1.19043 0.89940 0.98879 1.19716 1.20080 0.88328 0.79157 0.73352 1.90780 1.50358 1.50921 1.52231 1.86540 1.31673 1.36576 1.72912 1.23528 0.76820 1.03918 1.01872 1.18948 0.92094 0.94907 1.02730 1.20722 1.00162 0.92310 0.98318 1.21277 0.93873 0.99474 1.00585 1.21189 0.94995 0.97294 0.98961 1.20364 0.99838 0.92815 1.01466 1.18384 0.93666 0.88133 1.02008 0.93833 0.96380 0.93218 0.93498 0.91464 0.92762 0.75538 0.81288 0.83464 0.76527 0.91788 0.84705 0.92530 0.86051 0.83219 0.82762 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.51 71.98 0.61 -4.50 16 2 C -0.12 -5.56 5.45 30.59 0.17 -5.40 16 3 C 0.28 13.26 2.24 44.24 0.10 13.36 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.54 -26.72 8.73 25.60 0.22 -26.50 16 6 H 0.08 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -51.00 11.29 21.45 0.24 -50.76 16 9 Si 0.97 40.27 29.54 68.60 2.03 42.29 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 13 N -0.70 -23.82 5.02 -446.09 -2.24 -26.06 16 14 C 0.48 15.35 6.47 87.66 0.57 15.92 16 15 O -0.58 -24.94 13.56 -3.03 -0.04 -24.98 16 16 C 0.09 1.69 6.43 85.63 0.55 2.24 16 17 N -0.45 -11.05 2.23 -519.31 -1.16 -12.21 16 18 C 0.17 4.14 11.04 83.73 0.92 5.06 16 19 C -0.27 -7.92 6.27 -19.03 -0.12 -8.04 16 20 C 0.54 16.20 7.93 70.04 0.56 16.76 16 21 O -0.55 -19.06 15.95 19.51 0.31 -18.75 16 22 O -0.36 -8.55 10.40 -57.48 -0.60 -9.15 16 23 C 0.03 0.53 10.57 113.37 1.20 1.73 16 24 C -0.08 -2.64 6.27 -20.08 -0.13 -2.76 16 25 C -0.10 -2.85 9.85 22.40 0.22 -2.63 16 26 C -0.13 -3.23 10.03 22.28 0.22 -3.00 16 27 C -0.11 -2.45 10.01 22.28 0.22 -2.23 16 28 C -0.12 -3.29 9.97 22.37 0.22 -3.06 16 29 C 0.08 2.36 6.78 38.91 0.26 2.62 16 30 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.02 0.84 7.85 -2.39 -0.02 0.82 16 32 H 0.05 1.93 5.65 -2.39 -0.01 1.92 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 3.57 5.95 -2.39 -0.01 3.55 16 35 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.41 10.79 8.54 -92.70 -0.79 10.00 16 37 H 0.17 1.65 8.11 -2.39 -0.02 1.63 16 38 H 0.15 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.12 3.65 7.45 -2.91 -0.02 3.62 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -77.23 389.39 5.02 -72.21 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.22 Total: 26.65 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 6.25 Total: 0.75 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -3.16 Total: -89.04 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.33 Total: -52.87 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -77.23 5.02 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547274336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.044 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds