Wall clock time and date at job start Wed Apr 1 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 O 1.42896 * 109.47387 * 120.00675 * 2 1 3 5 5 C 1.35759 * 117.00234 * 179.79676 * 4 2 1 6 6 C 1.38961 * 119.90805 * 174.83815 * 5 4 2 7 7 C 1.37735 * 120.09456 * 180.02562 * 6 5 4 8 8 C 1.39755 * 119.90539 * 359.97438 * 7 6 5 9 9 C 1.43199 * 120.09147 * 180.02562 * 8 7 6 10 10 N 7.45475 * 162.63823 * 120.55770 * 2 1 3 11 11 C 1.39752 * 119.80994 * 0.27923 * 8 7 6 12 12 C 1.37732 * 119.90569 * 359.41807 * 11 8 7 13 13 C 1.50707 * 109.47054 * 240.00669 * 2 1 3 14 14 O 1.21279 * 120.00404 * 98.77130 * 13 2 1 15 15 N 1.34779 * 119.99523 * 278.76812 * 13 2 1 16 16 C 1.47023 * 125.65167 * 4.80237 * 15 13 2 17 17 C 1.54331 * 107.26595 * 178.85021 * 16 15 13 18 18 C 1.55154 * 103.01863 * 338.14083 * 17 16 15 19 19 O 1.42900 * 111.03669 * 277.21576 * 18 17 16 20 20 C 1.50707 * 111.00396 * 153.38547 * 18 17 16 21 21 H 1.07996 * 119.99869 * 247.80078 * 20 18 17 22 22 C 1.37874 * 120.00115 * 67.79721 * 20 18 17 23 23 N 1.31516 * 119.99894 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99933 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47054 * 90.00395 * 24 22 20 26 26 H 1.48505 * 109.47067 * 209.99999 * 24 22 20 27 27 H 1.48494 * 109.47051 * 330.00240 * 24 22 20 28 28 C 1.47429 * 125.64631 * 185.11161 * 15 13 2 29 29 H 1.08996 * 109.47285 * 305.00530 * 1 2 3 30 30 H 1.08999 * 109.47245 * 65.00769 * 1 2 3 31 31 H 1.09001 * 109.47069 * 185.00386 * 1 2 3 32 32 H 1.08999 * 109.47292 * 174.10414 * 3 2 1 33 33 H 1.08999 * 109.47357 * 294.11082 * 3 2 1 34 34 H 1.09006 * 109.46984 * 54.11017 * 3 2 1 35 35 H 1.07994 * 119.95096 * 0.02562 * 6 5 4 36 36 H 1.08006 * 120.04287 * 180.02562 * 7 6 5 37 37 H 1.08003 * 120.04872 * 179.69905 * 11 8 7 38 38 H 1.08000 * 119.95483 * 180.27639 * 12 11 8 39 39 H 1.08999 * 109.87841 * 298.39733 * 16 15 13 40 40 H 1.08991 * 109.88051 * 59.55647 * 16 15 13 41 41 H 1.09001 * 110.84556 * 219.67393 * 17 16 15 42 42 H 1.09001 * 110.66782 * 96.52128 * 17 16 15 43 43 H 0.96706 * 114.00563 * 292.22049 * 19 18 17 44 44 H 0.97008 * 119.99513 * 179.97438 * 23 22 20 45 45 H 1.09005 * 110.36193 * 322.92820 * 28 15 13 46 46 H 1.08998 * 110.36936 * 85.13855 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 3.3522 -0.7664 1.3185 6 6 3.8823 -1.3129 2.4810 7 6 5.2472 -1.4083 2.6394 8 6 6.0993 -0.9550 1.6286 9 6 7.5189 -1.0528 1.7888 10 7 8.6451 -1.1310 1.9156 11 6 5.5620 -0.4012 0.4634 12 6 4.1959 -0.3153 0.3106 13 6 2.0323 -0.7103 -1.2306 14 8 2.3855 -0.0705 -2.1985 15 7 2.0891 -2.0567 -1.2555 16 6 1.6029 -2.9546 -0.1977 17 6 1.8508 -4.4011 -0.6749 18 6 1.9542 -4.2480 -2.2154 19 8 0.6580 -4.2211 -2.8164 20 6 2.8000 -5.3437 -2.8116 21 1 3.7579 -5.1078 -3.2511 22 6 2.3510 -6.6471 -2.7959 23 7 1.1843 -6.9343 -2.2611 24 14 3.3998 -8.0053 -3.5343 25 1 4.2951 -8.5630 -2.4890 26 1 2.5199 -9.0810 -4.0577 27 1 4.2179 -7.4515 -4.6429 28 6 2.6550 -2.8727 -2.3451 29 1 -0.3633 0.5895 0.8417 30 1 -0.3634 0.4342 -0.9314 31 1 -0.3633 -1.0238 0.0896 32 1 3.1248 1.4443 0.1056 33 1 1.7653 1.9250 -0.9380 34 1 1.5931 1.9859 0.8326 35 1 3.2231 -1.6633 3.2614 36 1 5.6583 -1.8336 3.5431 37 1 6.2170 -0.0453 -0.3181 38 1 3.7798 0.1084 -0.5915 39 1 2.1494 -2.7683 0.7268 40 1 0.5363 -2.7963 -0.0385 41 1 1.0146 -5.0468 -0.4068 42 1 2.7827 -4.7879 -0.2625 43 1 0.1807 -5.0603 -2.7600 44 1 0.8683 -7.8514 -2.2504 45 1 2.4308 -2.4223 -3.3121 46 1 3.7322 -2.9805 -2.2182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:23 Heat of formation + Delta-G solvation = -47.759188 kcal Electronic energy + Delta-G solvation = -31606.870438 eV Core-core repulsion = 27462.856959 eV Total energy + Delta-G solvation = -4144.013479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54514 -39.26285 -38.09323 -37.34225 -36.24054 -34.40025 -33.36463 -32.18697 -31.38467 -30.45460 -29.93210 -28.44316 -27.48083 -25.58776 -24.13946 -23.44414 -22.77829 -21.53006 -19.88013 -19.54344 -19.12803 -17.96029 -17.24207 -16.61805 -16.12460 -15.85667 -15.34145 -15.02641 -14.94050 -14.56361 -14.37744 -14.20259 -13.99584 -13.77152 -13.70919 -13.32531 -13.09054 -12.97620 -12.76213 -12.64041 -12.46780 -12.29970 -12.20423 -12.14087 -11.98778 -11.76925 -11.63031 -11.42050 -11.36529 -11.05520 -10.92071 -10.81815 -10.62346 -10.52877 -10.08762 -9.54746 -9.44158 -9.26259 -8.73424 -8.38781 -8.26848 -8.09460 -6.34832 -4.42445 0.67727 1.10767 2.53159 2.58988 2.81211 2.98599 3.16617 3.24451 3.26597 3.32866 3.71241 3.82982 4.22231 4.39876 4.53578 4.62317 4.69418 4.72015 4.92413 4.94047 5.15252 5.31792 5.41542 5.48206 5.49568 5.53399 5.56080 5.70812 5.72223 5.80329 5.86448 5.92582 5.95209 6.03091 6.09474 6.13077 6.25147 6.34956 6.39270 6.54380 6.79755 6.87460 7.09437 7.25418 7.27042 7.41140 7.68687 7.90583 7.96435 8.33114 8.59608 9.26637 9.41689 10.72882 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.004331 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.185594 B = 6463.148442 C = 8288.027684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.099 3.901 3 C -0.180 4.180 4 O -0.290 6.290 5 C 0.165 3.835 6 C -0.152 4.152 7 C -0.031 4.031 8 C -0.074 4.074 9 C 0.263 3.737 10 N -0.430 5.430 11 C -0.025 4.025 12 C -0.218 4.218 13 C 0.504 3.496 14 O -0.548 6.548 15 N -0.589 5.589 16 C 0.098 3.902 17 C -0.139 4.139 18 C 0.251 3.749 19 O -0.585 6.585 20 C -0.536 4.536 21 H 0.065 0.935 22 C 0.074 3.926 23 N -0.897 5.897 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.117 3.883 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.386 0.614 44 H 0.270 0.730 45 H 0.072 0.928 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 12.209 10.553 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.059 3.941 3 C -0.237 4.237 4 O -0.203 6.203 5 C 0.118 3.882 6 C -0.171 4.171 7 C -0.051 4.051 8 C -0.078 4.078 9 C -0.051 4.051 10 N -0.106 5.106 11 C -0.046 4.046 12 C -0.236 4.236 13 C 0.291 3.709 14 O -0.428 6.428 15 N -0.320 5.320 16 C -0.024 4.024 17 C -0.178 4.178 18 C 0.210 3.790 19 O -0.395 6.395 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.129 4.129 23 N -0.537 5.537 24 Si 0.730 3.270 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.004 4.004 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.238 0.762 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.741 12.873 10.275 16.487 hybrid contribution -0.057 -1.444 -0.437 1.510 sum 0.684 11.429 9.838 15.095 Atomic orbital electron populations 1.21816 0.89192 1.04597 1.03918 1.22172 0.97398 0.92512 0.82066 1.22582 1.03400 0.93347 1.04416 1.86199 1.18774 1.72229 1.43131 1.19213 0.82705 0.92679 0.93577 1.20330 0.94726 1.04929 0.97076 1.20919 0.91877 0.94965 0.97384 1.15912 0.84578 1.09382 0.97950 1.25655 0.92591 0.93319 0.93563 1.81238 1.11996 1.09419 1.07952 1.20949 0.94655 0.93893 0.95076 1.21889 0.94054 1.06639 1.01016 1.20402 0.79237 0.81959 0.89305 1.90709 1.50570 1.65288 1.36268 1.48600 1.57484 1.04273 1.21625 1.22354 0.98421 0.91755 0.89866 1.23220 1.02468 0.91881 1.00240 1.19539 0.82255 0.89397 0.87797 1.86089 1.31065 1.40757 1.81585 1.21466 1.04792 0.91679 1.39471 0.91691 1.24968 0.95165 0.98726 0.93995 1.69557 1.19000 1.20520 1.44627 0.86415 0.80056 0.80988 0.79547 1.20416 1.20971 1.19666 1.22457 0.96949 0.91338 0.89666 0.90325 0.89617 0.90386 0.90187 0.89321 0.90678 0.83931 0.84340 0.84792 0.82587 0.91760 0.92260 0.89893 0.91431 0.76177 0.92041 0.90943 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.79 37.16 0.33 -1.16 16 2 C 0.10 1.26 0.72 -91.77 -0.07 1.19 16 3 C -0.18 -1.91 7.80 37.16 0.29 -1.62 16 4 O -0.29 -3.55 7.63 -18.99 -0.14 -3.69 16 5 C 0.17 1.97 4.71 -39.04 -0.18 1.79 16 6 C -0.15 -1.51 9.97 -39.50 -0.39 -1.90 16 7 C -0.03 -0.29 9.75 -39.20 -0.38 -0.67 16 8 C -0.07 -0.81 5.74 -106.84 -0.61 -1.43 16 9 C 0.26 3.27 15.33 -22.48 -0.34 2.92 16 10 N -0.43 -6.24 18.54 41.84 0.78 -5.46 16 11 C -0.03 -0.29 9.75 -39.20 -0.38 -0.67 16 12 C -0.22 -2.74 6.65 -39.50 -0.26 -3.00 16 13 C 0.50 8.42 4.00 -10.98 -0.04 8.38 16 14 O -0.55 -10.53 15.30 5.56 0.09 -10.45 16 15 N -0.59 -10.70 3.22 -170.52 -0.55 -11.25 16 16 C 0.10 1.69 5.71 -3.06 -0.02 1.67 16 17 C -0.14 -2.85 5.64 -24.89 -0.14 -2.99 16 18 C 0.25 5.79 0.89 -89.63 -0.08 5.71 16 19 O -0.58 -14.42 13.18 -35.23 -0.46 -14.88 16 20 C -0.54 -13.49 8.25 -34.44 -0.28 -13.78 16 21 H 0.06 1.64 7.77 -52.49 -0.41 1.23 16 22 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 23 N -0.90 -22.43 10.79 55.43 0.60 -21.83 16 24 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.12 2.48 6.10 -2.53 -0.02 2.46 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.91 6.56 -51.93 -0.34 0.56 16 32 H 0.08 0.87 4.83 -51.93 -0.25 0.62 16 33 H 0.09 0.97 7.67 -51.93 -0.40 0.58 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.16 2.21 3.20 -52.49 -0.17 2.04 16 39 H 0.06 0.99 5.54 -51.93 -0.29 0.70 16 40 H 0.06 0.97 6.65 -51.93 -0.35 0.63 16 41 H 0.08 1.79 7.85 -51.93 -0.41 1.38 16 42 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 43 H 0.39 9.66 6.93 45.56 0.32 9.98 16 44 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 45 H 0.07 1.64 7.99 -51.93 -0.41 1.23 16 46 H 0.07 1.49 8.02 -51.93 -0.42 1.08 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -28.38 372.54 -7.00 -35.38 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.21 Total: 13.15 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.69 Total: -1.36 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.82 Total: -38.54 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.52 Total: -29.02 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.38 -7.00 -35.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.377 kcal (2) G-P(sol) polarization free energy of solvation -28.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds