Wall clock time and date at job start Wed Apr 1 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 O 1.42896 * 109.47387 * 120.00675 * 2 1 3 5 5 C 1.35759 * 117.00234 * 179.79676 * 4 2 1 6 6 C 1.38961 * 119.90805 * 174.83815 * 5 4 2 7 7 C 1.37735 * 120.09456 * 180.02562 * 6 5 4 8 8 C 1.39755 * 119.90539 * 359.97438 * 7 6 5 9 9 C 1.43199 * 120.09147 * 180.02562 * 8 7 6 10 10 N 7.45475 * 162.63823 * 120.55770 * 2 1 3 11 11 C 1.39752 * 119.80994 * 0.27923 * 8 7 6 12 12 C 1.37732 * 119.90569 * 359.41807 * 11 8 7 13 13 C 1.50707 * 109.47054 * 240.00669 * 2 1 3 14 14 O 1.21279 * 120.00404 * 98.77130 * 13 2 1 15 15 N 1.34779 * 119.99523 * 278.76812 * 13 2 1 16 16 C 1.47023 * 125.65167 * 4.80237 * 15 13 2 17 17 C 1.54331 * 107.26595 * 178.85021 * 16 15 13 18 18 C 1.55154 * 103.01863 * 338.14083 * 17 16 15 19 19 O 1.42900 * 111.03669 * 277.21576 * 18 17 16 20 20 C 1.50707 * 111.00396 * 153.38547 * 18 17 16 21 21 H 1.07996 * 119.99869 * 247.80078 * 20 18 17 22 22 C 1.37874 * 120.00115 * 67.79721 * 20 18 17 23 23 N 1.31516 * 119.99894 * 0.02562 * 22 20 18 24 24 Si 1.86802 * 119.99933 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47054 * 90.00395 * 24 22 20 26 26 H 1.48505 * 109.47067 * 209.99999 * 24 22 20 27 27 H 1.48494 * 109.47051 * 330.00240 * 24 22 20 28 28 C 1.47429 * 125.64631 * 185.11161 * 15 13 2 29 29 H 1.08996 * 109.47285 * 305.00530 * 1 2 3 30 30 H 1.08999 * 109.47245 * 65.00769 * 1 2 3 31 31 H 1.09001 * 109.47069 * 185.00386 * 1 2 3 32 32 H 1.08999 * 109.47292 * 174.10414 * 3 2 1 33 33 H 1.08999 * 109.47357 * 294.11082 * 3 2 1 34 34 H 1.09006 * 109.46984 * 54.11017 * 3 2 1 35 35 H 1.07994 * 119.95096 * 0.02562 * 6 5 4 36 36 H 1.08006 * 120.04287 * 180.02562 * 7 6 5 37 37 H 1.08003 * 120.04872 * 179.69905 * 11 8 7 38 38 H 1.08000 * 119.95483 * 180.27639 * 12 11 8 39 39 H 1.08999 * 109.87841 * 298.39733 * 16 15 13 40 40 H 1.08991 * 109.88051 * 59.55647 * 16 15 13 41 41 H 1.09001 * 110.84556 * 219.67393 * 17 16 15 42 42 H 1.09001 * 110.66782 * 96.52128 * 17 16 15 43 43 H 0.96706 * 114.00563 * 292.22049 * 19 18 17 44 44 H 0.97008 * 119.99513 * 179.97438 * 23 22 20 45 45 H 1.09005 * 110.36193 * 322.92820 * 28 15 13 46 46 H 1.08998 * 110.36936 * 85.13855 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 3.3522 -0.7664 1.3185 6 6 3.8823 -1.3129 2.4810 7 6 5.2472 -1.4083 2.6394 8 6 6.0993 -0.9550 1.6286 9 6 7.5189 -1.0528 1.7888 10 7 8.6451 -1.1310 1.9156 11 6 5.5620 -0.4012 0.4634 12 6 4.1959 -0.3153 0.3106 13 6 2.0323 -0.7103 -1.2306 14 8 2.3855 -0.0705 -2.1985 15 7 2.0891 -2.0567 -1.2555 16 6 1.6029 -2.9546 -0.1977 17 6 1.8508 -4.4011 -0.6749 18 6 1.9542 -4.2480 -2.2154 19 8 0.6580 -4.2211 -2.8164 20 6 2.8000 -5.3437 -2.8116 21 1 3.7579 -5.1078 -3.2511 22 6 2.3510 -6.6471 -2.7959 23 7 1.1843 -6.9343 -2.2611 24 14 3.3998 -8.0053 -3.5343 25 1 4.2951 -8.5630 -2.4890 26 1 2.5199 -9.0810 -4.0577 27 1 4.2179 -7.4515 -4.6429 28 6 2.6550 -2.8727 -2.3451 29 1 -0.3633 0.5895 0.8417 30 1 -0.3634 0.4342 -0.9314 31 1 -0.3633 -1.0238 0.0896 32 1 3.1248 1.4443 0.1056 33 1 1.7653 1.9250 -0.9380 34 1 1.5931 1.9859 0.8326 35 1 3.2231 -1.6633 3.2614 36 1 5.6583 -1.8336 3.5431 37 1 6.2170 -0.0453 -0.3181 38 1 3.7798 0.1084 -0.5915 39 1 2.1494 -2.7683 0.7268 40 1 0.5363 -2.7963 -0.0385 41 1 1.0146 -5.0468 -0.4068 42 1 2.7827 -4.7879 -0.2625 43 1 0.1807 -5.0603 -2.7600 44 1 0.8683 -7.8514 -2.2504 45 1 2.4308 -2.4223 -3.3121 46 1 3.7322 -2.9805 -2.2182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:21 Heat of formation + Delta-G solvation = -65.107840 kcal Electronic energy + Delta-G solvation = -31607.622732 eV Core-core repulsion = 27462.856959 eV Total energy + Delta-G solvation = -4144.765773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.61360 -40.44284 -39.34038 -38.71809 -37.26012 -36.11856 -34.32772 -34.12745 -32.22629 -31.56136 -31.33972 -30.06118 -28.36735 -27.28584 -25.22777 -24.59440 -23.79103 -22.81158 -21.51575 -20.75192 -20.03488 -19.36526 -18.96903 -17.64453 -17.26549 -17.12702 -16.89760 -16.50783 -16.13859 -16.03469 -15.50393 -15.31965 -15.11150 -14.95641 -14.67719 -14.65234 -14.40046 -14.02638 -13.91964 -13.82052 -13.72436 -13.54642 -13.26290 -13.21985 -13.16293 -13.11612 -13.00123 -12.89266 -12.69333 -12.59573 -12.42750 -12.28792 -11.91870 -11.86890 -11.76523 -11.30175 -10.83313 -10.62123 -10.13456 -10.09583 -9.59525 -9.29353 -8.25252 -6.39072 -0.21316 0.27828 1.31919 1.41279 1.45194 1.53196 1.60537 1.82130 1.91120 2.07680 2.39515 2.81749 2.90019 2.99775 3.23541 3.64719 3.71166 3.78130 3.83460 3.84669 4.04127 4.08810 4.31767 4.35576 4.38758 4.48148 4.59275 4.63206 4.64732 4.69893 4.76737 4.78876 4.89178 4.91704 5.03350 5.11246 5.14872 5.18735 5.23365 5.25706 5.31536 5.45292 5.53717 5.55321 5.78049 6.05330 6.14975 6.44378 6.54690 6.64308 6.97393 7.32294 7.46259 8.81014 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.004331 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.185594 B = 6463.148442 C = 8288.027684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.107 3.893 3 C -0.176 4.176 4 O -0.286 6.286 5 C 0.153 3.847 6 C -0.145 4.145 7 C -0.018 4.018 8 C -0.080 4.080 9 C 0.285 3.715 10 N -0.470 5.470 11 C -0.029 4.029 12 C -0.232 4.232 13 C 0.502 3.498 14 O -0.579 6.579 15 N -0.594 5.594 16 C 0.111 3.889 17 C -0.129 4.129 18 C 0.237 3.763 19 O -0.594 6.594 20 C -0.561 4.561 21 H 0.054 0.946 22 C 0.040 3.960 23 N -0.908 5.908 24 Si 0.956 3.044 25 H -0.273 1.273 26 H -0.280 1.280 27 H -0.277 1.277 28 C 0.125 3.875 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.381 0.619 44 H 0.272 0.728 45 H 0.047 0.953 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 12.522 12.967 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 C -0.233 4.233 4 O -0.199 6.199 5 C 0.106 3.894 6 C -0.163 4.163 7 C -0.038 4.038 8 C -0.083 4.083 9 C -0.029 4.029 10 N -0.147 5.147 11 C -0.050 4.050 12 C -0.250 4.250 13 C 0.291 3.709 14 O -0.460 6.460 15 N -0.325 5.325 16 C -0.011 4.011 17 C -0.168 4.168 18 C 0.197 3.803 19 O -0.405 6.405 20 C -0.599 4.599 21 H 0.073 0.927 22 C -0.162 4.162 23 N -0.548 5.548 24 Si 0.782 3.218 25 H -0.198 1.198 26 H -0.205 1.205 27 H -0.202 1.202 28 C 0.002 3.998 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.233 0.767 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.218 13.201 12.709 18.326 hybrid contribution 0.108 -1.516 -1.230 1.955 sum 0.326 11.685 11.479 16.384 Atomic orbital electron populations 1.21891 0.87528 1.04757 1.05338 1.22198 0.98447 0.92732 0.80035 1.22588 1.03373 0.92110 1.05263 1.86203 1.18957 1.72389 1.42378 1.19462 0.82499 0.93248 0.94190 1.20644 0.95172 1.03778 0.96756 1.21260 0.91516 0.93407 0.97646 1.15970 0.83924 1.10026 0.98418 1.25795 0.92635 0.92123 0.92374 1.81261 1.13126 1.10959 1.09334 1.21003 0.94470 0.93976 0.95559 1.21756 0.94566 1.07794 1.00887 1.21300 0.77986 0.81130 0.90451 1.90686 1.51611 1.65712 1.38038 1.48615 1.57990 1.04952 1.20906 1.22286 0.99468 0.89302 0.90053 1.22994 1.01637 0.93955 0.98180 1.19706 0.81375 0.89850 0.89370 1.86079 1.31780 1.40423 1.82175 1.21697 1.04940 0.92911 1.40368 0.92743 1.25540 0.96153 1.00209 0.94253 1.69613 1.19534 1.20953 1.44659 0.85588 0.78752 0.78739 0.78715 1.19840 1.20530 1.20248 1.22148 0.96864 0.90972 0.89797 0.86980 0.89811 0.91211 0.90623 0.90055 0.87695 0.81260 0.81398 0.84469 0.84425 0.89372 0.91130 0.91098 0.91966 0.76711 0.91790 0.93434 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.79 71.98 0.63 -1.99 16 2 C 0.11 2.49 0.72 -11.54 -0.01 2.48 16 3 C -0.18 -3.40 7.80 71.98 0.56 -2.84 16 4 O -0.29 -6.15 7.63 -90.85 -0.69 -6.84 16 5 C 0.15 3.25 4.71 22.62 0.11 3.36 16 6 C -0.15 -2.34 9.97 22.32 0.22 -2.12 16 7 C -0.02 -0.28 9.75 22.52 0.22 -0.06 16 8 C -0.08 -1.59 5.74 -21.30 -0.12 -1.71 16 9 C 0.28 6.70 15.33 88.33 1.35 8.06 16 10 N -0.47 -13.32 18.54 19.00 0.35 -12.97 16 11 C -0.03 -0.65 9.75 22.52 0.22 -0.43 16 12 C -0.23 -5.57 6.65 22.33 0.15 -5.42 16 13 C 0.50 16.59 4.00 87.66 0.35 16.94 16 14 O -0.58 -22.66 15.30 -3.03 -0.05 -22.71 16 15 N -0.59 -21.45 3.22 -811.78 -2.61 -24.06 16 16 C 0.11 3.64 5.71 86.73 0.50 4.14 16 17 C -0.13 -5.24 5.64 31.78 0.18 -5.06 16 18 C 0.24 11.15 0.89 -10.15 -0.01 11.14 16 19 O -0.59 -29.94 13.18 -148.98 -1.96 -31.91 16 20 C -0.56 -28.78 8.25 25.60 0.21 -28.57 16 21 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 22 C 0.04 1.98 5.30 84.65 0.45 2.43 16 23 N -0.91 -45.38 10.79 21.45 0.23 -45.15 16 24 Si 0.96 40.57 29.54 68.60 2.03 42.60 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 C 0.12 5.43 6.10 86.85 0.53 5.96 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.45 6.56 -2.39 -0.02 1.44 16 32 H 0.08 1.54 4.83 -2.39 -0.01 1.53 16 33 H 0.08 1.70 7.67 -2.39 -0.02 1.68 16 34 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.14 3.88 3.20 -2.91 -0.01 3.87 16 39 H 0.09 2.49 5.54 -2.39 -0.01 2.48 16 40 H 0.07 2.19 6.65 -2.39 -0.02 2.17 16 41 H 0.07 3.04 7.85 -2.39 -0.02 3.02 16 42 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 43 H 0.38 19.50 6.93 -74.05 -0.51 18.98 16 44 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 45 H 0.05 2.26 7.99 -2.38 -0.02 2.24 16 46 H 0.07 3.04 8.02 -2.39 -0.02 3.02 16 Total: -1.00 -62.31 372.54 3.36 -58.95 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.53 Total: 35.79 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.54 Total: 6.30 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.03 Total: -82.18 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -2.70 Total: -61.46 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -62.31 3.36 -58.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.159 kcal (2) G-P(sol) polarization free energy of solvation -62.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds