Wall clock time and date at job start Wed Apr 1 2020 03:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.08996 * 109.47099 * 304.89796 * 3 2 1 5 5 C 1.50697 * 109.47347 * 184.89790 * 3 2 1 6 6 H 1.08008 * 120.00237 * 245.45129 * 5 3 2 7 7 C 1.37873 * 120.00293 * 65.44794 * 5 3 2 8 8 N 1.31520 * 120.00037 * 9.47428 * 7 5 3 9 9 Si 1.86803 * 120.00689 * 189.47115 * 7 5 3 10 10 H 1.48496 * 109.46751 * 84.99429 * 9 7 5 11 11 H 1.48491 * 109.47459 * 204.99715 * 9 7 5 12 12 H 1.48501 * 109.46607 * 324.99607 * 9 7 5 13 13 N 1.46499 * 109.47137 * 64.89809 * 3 2 1 14 14 C 1.34775 * 119.99832 * 274.99767 * 13 3 2 15 15 O 1.21646 * 120.00383 * 0.02562 * 14 13 3 16 16 C 1.47066 * 119.99823 * 179.97438 * 14 13 3 17 17 N 1.38138 * 125.43282 * 0.15857 * 16 14 13 18 18 H 0.97007 * 125.60692 * 0.05926 * 17 16 14 19 19 C 1.37483 * 108.79039 * 180.30091 * 17 16 14 20 20 C 1.39220 * 133.18247 * 179.73766 * 19 17 16 21 21 C 1.37670 * 119.80956 * 179.97438 * 20 19 17 22 22 C 1.38938 * 120.65014 * 0.02562 * 21 20 19 23 23 C 1.36440 * 120.61350 * 359.97438 * 22 21 20 24 24 C 1.40102 * 119.83040 * 0.02562 * 23 22 21 25 25 C 1.35872 * 125.42677 * 180.02562 * 16 14 13 26 26 C 1.50695 * 126.13965 * 359.97072 * 25 16 14 27 27 C 1.50704 * 109.47110 * 269.69049 * 26 25 16 28 28 O 1.20822 * 120.00015 * 359.97438 * 27 26 25 29 29 O 1.34230 * 119.99656 * 180.02562 * 27 26 25 30 30 C 1.45202 * 116.99283 * 179.97438 * 29 27 26 31 31 H 1.08999 * 109.47435 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47551 * 300.00563 * 1 2 3 33 33 H 1.08999 * 109.46982 * 60.00206 * 1 2 3 34 34 H 1.08997 * 109.47551 * 239.99437 * 2 1 3 35 35 H 1.09008 * 109.47034 * 120.00006 * 2 1 3 36 36 H 0.96993 * 120.00421 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00290 * 95.00342 * 13 3 2 38 38 H 1.08005 * 120.09838 * 0.02562 * 20 19 17 39 39 H 1.08006 * 119.67715 * 179.97438 * 21 20 19 40 40 H 1.08005 * 119.69375 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.08060 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47310 * 149.68532 * 26 25 16 43 43 H 1.09003 * 109.46877 * 29.68850 * 26 25 16 44 44 H 1.08998 * 109.47306 * 60.00603 * 30 29 27 45 45 H 1.09011 * 109.46823 * 179.97438 * 30 29 27 46 46 H 1.09001 * 109.47458 * 299.99424 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8090 0.6940 7 6 4.1413 0.9799 -1.2730 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7326 -1.3287 10 1 6.3289 -0.6068 -0.7832 11 1 6.4620 0.8272 -2.7341 12 1 6.6562 1.7807 -0.5130 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3635 15 8 -0.3426 2.6322 0.4269 16 6 0.0416 3.3230 2.6193 17 7 0.8307 3.4277 3.7482 18 1 1.7318 3.0808 3.8416 19 6 0.1270 4.0996 4.7196 20 6 0.4271 4.4737 6.0266 21 6 -0.5053 5.1574 6.7739 22 6 -1.7458 5.4788 6.2371 23 6 -2.0629 5.1229 4.9586 24 6 -1.1313 4.4265 4.1776 25 6 -1.1529 3.9268 2.8531 26 6 -2.2977 4.0391 1.8795 27 6 -2.1557 5.3096 1.0815 28 8 -1.2211 6.0483 1.2830 29 8 -3.0681 5.6209 0.1475 30 6 -2.8680 6.8603 -0.5821 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 3.8314 0.3851 -3.1429 37 1 2.2686 2.1243 1.9977 38 1 1.3888 4.2289 6.4528 39 1 -0.2704 5.4462 7.7878 40 1 -2.4659 6.0152 6.8373 41 1 -3.0296 5.3775 4.5498 42 1 -3.2400 4.0573 2.4271 43 1 -2.2861 3.1830 1.2048 44 1 -1.9131 6.8231 -1.1064 45 1 -3.6739 6.9909 -1.3044 46 1 -2.8667 7.6970 0.1165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:02 Heat of formation + Delta-G solvation = -91.716143 kcal Electronic energy + Delta-G solvation = -30506.585127 eV Core-core repulsion = 26360.665532 eV Total energy + Delta-G solvation = -4145.919595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.78005 -41.27854 -40.50654 -37.81645 -37.48289 -36.99537 -34.66284 -34.13478 -32.98547 -31.38248 -30.49418 -29.47256 -28.89125 -27.72557 -25.54586 -24.44423 -23.14319 -22.67366 -22.09770 -21.29476 -20.46092 -19.54792 -18.67270 -18.43480 -17.96022 -17.46824 -17.42677 -17.27838 -16.64840 -16.41068 -16.22558 -15.55132 -15.32700 -15.16861 -14.79049 -14.71694 -14.59206 -14.40710 -14.22626 -13.90202 -13.82438 -13.48744 -13.32014 -13.11668 -12.94129 -12.91826 -12.66205 -12.51671 -12.51382 -12.23467 -12.12726 -11.81267 -11.79002 -11.64656 -11.60674 -11.15581 -10.90940 -10.72684 -10.57202 -9.82709 -9.19286 -8.72537 -8.23561 -6.36995 -0.23626 0.69902 1.02843 1.24264 1.41849 1.42475 1.51836 1.80119 1.95554 2.25557 2.41082 2.48051 2.98848 3.08310 3.62607 3.76605 3.81867 4.01708 4.07515 4.26769 4.29688 4.30932 4.38023 4.44895 4.51984 4.52930 4.58266 4.61944 4.67256 4.69019 4.83404 4.88812 5.03495 5.16297 5.21149 5.36519 5.37892 5.42019 5.49294 5.54948 5.58077 5.66057 5.70057 5.72520 5.83970 6.00782 6.15616 6.42859 6.68666 6.76762 6.80580 7.22518 7.37946 8.84964 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.003522 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.790227 B = 7948.013108 C = 9459.959026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.279 3.721 4 H 0.007 0.993 5 C -0.555 4.555 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.698 5.698 14 C 0.567 3.433 15 O -0.557 6.557 16 C 0.024 3.976 17 N -0.567 5.567 18 H 0.428 0.572 19 C 0.100 3.900 20 C -0.138 4.138 21 C -0.086 4.086 22 C -0.145 4.145 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.088 4.088 26 C -0.047 4.047 27 C 0.470 3.530 28 O -0.537 6.537 29 O -0.364 6.364 30 C 0.029 3.971 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.266 0.734 37 H 0.397 0.603 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.152 0.848 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.121 0.879 44 H 0.045 0.955 45 H 0.135 0.865 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 8.319 17.365 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.176 3.824 4 H 0.025 0.975 5 C -0.593 4.593 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.346 5.346 14 C 0.353 3.647 15 O -0.437 6.437 16 C -0.087 4.087 17 N -0.172 5.172 18 H 0.269 0.731 19 C -0.010 4.010 20 C -0.159 4.159 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.098 4.098 26 C -0.085 4.085 27 C 0.314 3.686 28 O -0.427 6.427 29 O -0.280 6.280 30 C -0.064 4.064 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.232 0.768 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.170 0.830 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.139 0.861 44 H 0.064 0.936 45 H 0.153 0.847 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.706 8.374 16.458 21.864 hybrid contribution 2.014 -0.222 -0.643 2.125 sum -9.692 8.153 15.815 20.261 Atomic orbital electron populations 1.21694 0.96390 0.99628 1.00612 1.21695 0.94365 0.98505 1.00502 1.18460 0.93864 0.89257 0.80835 0.97479 1.21499 0.91237 1.44209 1.02314 0.91206 1.25729 1.03100 0.94675 0.94501 1.70118 1.37771 1.44396 1.02714 0.85452 0.79265 0.79038 0.77164 1.19359 1.21327 1.19094 1.46176 1.14725 1.55732 1.17959 1.17521 0.82640 0.78492 0.86023 1.90746 1.52196 1.61157 1.39577 1.19980 0.93467 1.07127 0.88172 1.41823 1.16022 1.49346 1.10003 0.73149 1.18668 0.92020 0.98336 0.91976 1.20438 1.02171 1.03118 0.90156 1.21315 0.92634 0.96015 1.00545 1.21012 0.98117 1.02154 0.95111 1.20626 0.98458 0.96257 0.94177 1.18210 0.96017 1.05157 0.93617 1.18861 0.94207 1.02173 0.94569 1.19854 0.98914 0.93744 0.95938 1.23982 0.79121 0.87546 0.77921 1.90636 1.32862 1.52375 1.66804 1.86481 1.50126 1.43183 1.48231 1.23502 1.03776 0.82926 0.96167 0.93131 0.93561 0.95092 0.92744 0.93321 0.92507 0.76841 0.83787 0.82301 0.82983 0.84693 0.83643 0.86083 0.93583 0.84672 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.51 71.98 0.61 -4.81 16 2 C -0.11 -5.29 5.50 30.59 0.17 -5.13 16 3 C 0.28 14.12 2.11 44.24 0.09 14.22 16 4 H 0.01 0.44 7.52 -2.39 -0.02 0.43 16 5 C -0.55 -29.16 8.66 25.60 0.22 -28.94 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.13 5.16 84.65 0.44 1.56 16 8 N -0.91 -52.37 12.16 21.45 0.26 -52.11 16 9 Si 0.97 41.89 29.55 68.60 2.03 43.92 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 13 N -0.70 -29.05 5.02 -449.73 -2.26 -31.30 16 14 C 0.57 23.38 6.36 86.56 0.55 23.93 16 15 O -0.56 -26.00 11.69 -4.18 -0.05 -26.05 16 16 C 0.02 0.81 6.97 39.92 0.28 1.09 16 17 N -0.57 -15.64 6.07 -177.18 -1.08 -16.71 16 18 H 0.43 9.58 8.12 -92.70 -0.75 8.83 16 19 C 0.10 2.58 7.25 39.13 0.28 2.87 16 20 C -0.14 -2.65 10.08 22.37 0.23 -2.43 16 21 C -0.09 -1.32 10.01 22.30 0.22 -1.10 16 22 C -0.15 -2.37 9.97 22.02 0.22 -2.16 16 23 C -0.08 -1.64 10.06 22.30 0.22 -1.41 16 24 C -0.13 -3.48 6.11 -21.36 -0.13 -3.62 16 25 C -0.09 -2.83 4.67 -19.59 -0.09 -2.92 16 26 C -0.05 -1.38 5.70 29.10 0.17 -1.21 16 27 C 0.47 15.71 7.95 71.24 0.57 16.28 16 28 O -0.54 -21.43 15.78 21.98 0.35 -21.08 16 29 O -0.36 -10.61 10.57 -51.42 -0.54 -11.15 16 30 C 0.03 0.67 10.55 113.37 1.20 1.87 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.92 5.65 -2.39 -0.01 1.91 16 33 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 34 H 0.05 2.87 6.80 -2.39 -0.02 2.86 16 35 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.40 13.99 7.58 -92.71 -0.70 13.29 16 38 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.12 3.92 6.30 -2.39 -0.02 3.90 16 44 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 45 H 0.14 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 Total: -1.00 -74.13 384.69 3.54 -70.59 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.42 Total: 35.80 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.24 Total: 8.09 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.07 Total: -100.12 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -0.25 Total: -58.29 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -74.13 3.54 -70.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.121 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds