Wall clock time and date at job start Wed Apr 1 2020 03:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 H 1.09004 * 109.47097 * 55.00165 * 3 2 1 5 5 C 1.50702 * 109.47194 * 174.99744 * 3 2 1 6 6 H 1.08001 * 119.99937 * 120.00229 * 5 3 2 7 7 C 1.37873 * 119.99848 * 300.00076 * 5 3 2 8 8 N 1.31513 * 120.00326 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99689 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47127 * 90.00362 * 9 7 5 11 11 H 1.48503 * 109.46974 * 210.00156 * 9 7 5 12 12 H 1.48498 * 109.47221 * 329.99746 * 9 7 5 13 13 N 1.46496 * 109.47149 * 295.00110 * 3 2 1 14 14 C 1.34776 * 120.00191 * 84.99883 * 13 3 2 15 15 O 1.21642 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.47062 * 119.99804 * 179.97438 * 14 13 3 17 17 N 1.38145 * 125.43488 * 0.02650 * 16 14 13 18 18 H 0.97000 * 125.60196 * 359.75424 * 17 16 14 19 19 C 1.37473 * 108.79113 * 179.73787 * 17 16 14 20 20 C 1.39233 * 133.17938 * 179.97438 * 19 17 16 21 21 C 1.37667 * 119.80828 * 180.02562 * 20 19 17 22 22 C 1.38943 * 120.65187 * 0.02818 * 21 20 19 23 23 C 1.36442 * 120.61315 * 359.97438 * 22 21 20 24 24 C 1.40097 * 119.82873 * 0.02562 * 23 22 21 25 25 C 1.35872 * 125.42817 * 179.71976 * 16 14 13 26 26 C 1.50697 * 126.13579 * 0.21944 * 25 16 14 27 27 C 1.50695 * 109.47275 * 90.02601 * 26 25 16 28 28 O 1.20824 * 120.00242 * 359.97438 * 27 26 25 29 29 O 1.34229 * 120.00093 * 179.97438 * 27 26 25 30 30 C 1.45201 * 117.00005 * 179.97438 * 29 27 26 31 31 H 1.08996 * 109.47617 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46880 * 300.00509 * 1 2 3 33 33 H 1.09008 * 109.46863 * 59.99444 * 1 2 3 34 34 H 1.09002 * 109.46493 * 239.99866 * 2 1 3 35 35 H 1.08999 * 109.46622 * 120.00447 * 2 1 3 36 36 H 0.96996 * 120.00249 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99736 * 264.99846 * 13 3 2 38 38 H 1.07993 * 120.09660 * 0.02562 * 20 19 17 39 39 H 1.08000 * 119.67481 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.69385 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.08100 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47250 * 210.02629 * 26 25 16 43 43 H 1.09003 * 109.47326 * 330.02301 * 26 25 16 44 44 H 1.09009 * 109.47344 * 180.02562 * 30 29 27 45 45 H 1.09005 * 109.47390 * 300.00086 * 30 29 27 46 46 H 1.08996 * 109.47231 * 59.99887 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4441 0.1239 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1734 9 14 6.0050 0.8797 1.3812 10 1 6.4428 2.1125 2.0838 11 1 6.4390 -0.3114 2.1547 12 1 6.6131 0.8391 0.0271 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3414 2.6327 -0.4313 16 6 0.0466 3.3224 -2.6234 17 7 0.8368 3.4243 -3.7519 18 1 1.7379 3.0772 -3.8436 19 6 0.1359 4.0982 -4.7238 20 6 0.4399 4.4754 -6.0292 21 6 -0.4903 5.1606 -6.7778 22 6 -1.7322 5.4813 -6.2436 23 6 -2.0532 5.1224 -4.9670 24 6 -1.1238 4.4246 -4.1847 25 6 -1.1493 3.9219 -2.8613 26 6 -2.2969 4.0319 -1.8908 27 6 -2.1575 5.3005 -1.0896 28 8 -1.2219 6.0394 -1.2860 29 8 -3.0727 5.6097 -0.1576 30 6 -2.8743 6.8468 0.5762 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8292 -0.0611 2.9500 37 1 2.2721 2.1230 -1.9977 38 1 1.4027 4.2312 -6.4531 39 1 -0.2524 5.4517 -7.7902 40 1 -2.4505 6.0188 -6.8449 41 1 -3.0209 5.3765 -4.5603 42 1 -3.2376 4.0513 -2.4412 43 1 -2.2873 3.1743 -1.2181 44 1 -3.6824 6.9757 1.2964 45 1 -1.9211 6.8077 1.1035 46 1 -2.8703 7.6855 -0.1199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:08 Heat of formation + Delta-G solvation = -70.522752 kcal Electronic energy + Delta-G solvation = -30512.320660 eV Core-core repulsion = 26367.320079 eV Total energy + Delta-G solvation = -4145.000581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69522 -40.05294 -38.97983 -36.81074 -36.27337 -35.25018 -33.37163 -32.44528 -31.12994 -30.43066 -29.40283 -28.35697 -27.16944 -26.59847 -24.05937 -22.83988 -22.16136 -21.55450 -20.58448 -19.55574 -19.22897 -18.26131 -17.44021 -17.17846 -16.61512 -16.26800 -16.11264 -15.67449 -15.35920 -14.96263 -14.66347 -14.24357 -14.10705 -14.01533 -13.92882 -13.31006 -13.26113 -13.08631 -12.81128 -12.73691 -12.25060 -12.03653 -11.91001 -11.70556 -11.58485 -11.47915 -11.32695 -11.05057 -10.96077 -10.91423 -10.64208 -10.40512 -10.30940 -10.27896 -9.76660 -9.69296 -9.31857 -9.15402 -8.58625 -8.26836 -8.02881 -7.69268 -6.20075 -4.30201 0.81718 1.58566 2.12633 2.50916 2.90565 3.06171 3.19787 3.26791 3.27758 3.76510 3.83513 3.91054 4.29424 4.61242 4.81429 4.94766 4.99199 5.06888 5.11721 5.17062 5.22845 5.26729 5.28279 5.42013 5.54322 5.58672 5.66132 5.75446 5.87514 6.03942 6.32180 6.37889 6.40801 6.48694 6.52360 6.56394 6.59629 6.67520 6.94767 7.03099 7.11812 7.21031 7.29520 7.38145 7.52796 7.62402 7.79760 8.00499 8.07898 8.45554 8.64144 8.88213 9.36868 10.85201 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003512 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.270545 B = 7971.527224 C = 9446.744758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.526 6.526 16 C 0.058 3.942 17 N -0.573 5.573 18 H 0.420 0.580 19 C 0.109 3.891 20 C -0.128 4.128 21 C -0.097 4.097 22 C -0.149 4.149 23 C -0.065 4.065 24 C -0.097 4.097 25 C -0.092 4.092 26 C -0.046 4.046 27 C 0.470 3.530 28 O -0.501 6.501 29 O -0.362 6.362 30 C 0.037 3.963 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.101 0.899 36 H 0.266 0.734 37 H 0.383 0.617 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.146 8.166 -13.701 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.346 5.346 14 C 0.351 3.649 15 O -0.404 6.404 16 C -0.054 4.054 17 N -0.177 5.177 18 H 0.259 0.741 19 C -0.001 4.001 20 C -0.148 4.148 21 C -0.117 4.117 22 C -0.168 4.168 23 C -0.084 4.084 24 C -0.102 4.102 25 C -0.101 4.101 26 C -0.084 4.084 27 C 0.313 3.687 28 O -0.387 6.387 29 O -0.279 6.279 30 C -0.057 4.057 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.215 0.785 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.126 0.874 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.219 8.181 -12.778 18.870 hybrid contribution 2.016 0.033 -0.254 2.032 sum -9.203 8.215 -13.032 17.945 Atomic orbital electron populations 1.21855 0.98207 0.98304 1.01238 1.21942 0.92747 0.99496 1.02448 1.18885 0.94460 0.89274 0.80400 0.92895 1.21183 0.90505 1.39436 1.06521 0.92165 1.24865 0.98694 0.94647 0.95295 1.69880 1.35216 1.37317 1.09270 0.86445 0.84690 0.77735 0.78223 1.20509 1.20973 1.19879 1.46485 1.13894 1.55426 1.18815 1.17161 0.83414 0.79185 0.85190 1.90770 1.51326 1.60147 1.38153 1.20500 0.92029 1.04555 0.88274 1.41948 1.15904 1.49166 1.10667 0.74110 1.18264 0.92233 0.98424 0.91178 1.20059 1.00615 1.02953 0.91209 1.20799 0.93408 0.98182 0.99298 1.20566 0.97339 1.03206 0.95708 1.20319 0.98118 0.96467 0.93489 1.17974 0.94629 1.03573 0.94009 1.18573 0.94450 1.03430 0.93648 1.19743 0.97282 0.95275 0.96054 1.23624 0.79624 0.87457 0.78030 1.90662 1.31478 1.50905 1.65661 1.86486 1.50676 1.42070 1.48643 1.23200 1.03106 0.83869 0.95531 0.95633 0.92945 0.94354 0.95000 0.88063 0.92436 0.78461 0.86055 0.85797 0.86117 0.86220 0.87416 0.84761 0.88378 0.91880 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.59 2.24 -69.09 -0.15 6.43 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.05 11.29 55.43 0.63 -23.42 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.70 -14.06 5.02 -56.13 -0.28 -14.34 16 14 C 0.57 11.18 6.36 -12.68 -0.08 11.10 16 15 O -0.53 -11.58 11.70 5.24 0.06 -11.52 16 16 C 0.06 0.97 6.97 -82.29 -0.57 0.40 16 17 N -0.57 -7.97 6.07 -7.35 -0.04 -8.02 16 18 H 0.42 4.77 8.12 -40.82 -0.33 4.44 16 19 C 0.11 1.48 7.25 -83.98 -0.61 0.88 16 20 C -0.13 -1.42 10.08 -39.42 -0.40 -1.82 16 21 C -0.10 -0.96 10.01 -39.53 -0.40 -1.36 16 22 C -0.15 -1.52 9.97 -39.97 -0.40 -1.92 16 23 C -0.07 -0.78 10.06 -39.53 -0.40 -1.18 16 24 C -0.10 -1.40 6.11 -106.93 -0.65 -2.06 16 25 C -0.09 -1.46 4.67 -104.19 -0.49 -1.95 16 26 C -0.05 -0.66 5.69 -29.04 -0.17 -0.83 16 27 C 0.47 7.69 7.95 36.00 0.29 7.97 16 28 O -0.50 -9.66 15.78 -18.75 -0.30 -9.96 16 29 O -0.36 -5.25 10.57 -39.26 -0.41 -5.66 16 30 C 0.04 0.42 10.56 101.05 1.07 1.49 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 33 H 0.04 0.79 5.65 -51.92 -0.29 0.49 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.38 6.64 7.59 -40.82 -0.31 6.33 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.13 2.08 6.31 -51.93 -0.33 1.75 16 44 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 46 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -32.21 383.34 -8.92 -41.13 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.14 Total: 11.80 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.18 Total: -1.03 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.30 Total: -45.79 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.65 Total: -27.14 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.21 -8.92 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.395 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds