Wall clock time and date at job start Wed Apr 1 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 H 1.09004 * 109.47097 * 55.00165 * 3 2 1 5 5 C 1.50702 * 109.47194 * 174.99744 * 3 2 1 6 6 H 1.08001 * 119.99937 * 120.00229 * 5 3 2 7 7 C 1.37873 * 119.99848 * 300.00076 * 5 3 2 8 8 N 1.31513 * 120.00326 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99689 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47127 * 90.00362 * 9 7 5 11 11 H 1.48503 * 109.46974 * 210.00156 * 9 7 5 12 12 H 1.48498 * 109.47221 * 329.99746 * 9 7 5 13 13 N 1.46496 * 109.47149 * 295.00110 * 3 2 1 14 14 C 1.34776 * 120.00191 * 84.99883 * 13 3 2 15 15 O 1.21642 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.47062 * 119.99804 * 179.97438 * 14 13 3 17 17 N 1.38145 * 125.43488 * 0.02650 * 16 14 13 18 18 H 0.97000 * 125.60196 * 359.75424 * 17 16 14 19 19 C 1.37473 * 108.79113 * 179.73787 * 17 16 14 20 20 C 1.39233 * 133.17938 * 179.97438 * 19 17 16 21 21 C 1.37667 * 119.80828 * 180.02562 * 20 19 17 22 22 C 1.38943 * 120.65187 * 0.02818 * 21 20 19 23 23 C 1.36442 * 120.61315 * 359.97438 * 22 21 20 24 24 C 1.40097 * 119.82873 * 0.02562 * 23 22 21 25 25 C 1.35872 * 125.42817 * 179.71976 * 16 14 13 26 26 C 1.50697 * 126.13579 * 0.21944 * 25 16 14 27 27 C 1.50695 * 109.47275 * 90.02601 * 26 25 16 28 28 O 1.20824 * 120.00242 * 359.97438 * 27 26 25 29 29 O 1.34229 * 120.00093 * 179.97438 * 27 26 25 30 30 C 1.45201 * 117.00005 * 179.97438 * 29 27 26 31 31 H 1.08996 * 109.47617 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46880 * 300.00509 * 1 2 3 33 33 H 1.09008 * 109.46863 * 59.99444 * 1 2 3 34 34 H 1.09002 * 109.46493 * 239.99866 * 2 1 3 35 35 H 1.08999 * 109.46622 * 120.00447 * 2 1 3 36 36 H 0.96996 * 120.00249 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99736 * 264.99846 * 13 3 2 38 38 H 1.07993 * 120.09660 * 0.02562 * 20 19 17 39 39 H 1.08000 * 119.67481 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.69385 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.08100 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.47250 * 210.02629 * 26 25 16 43 43 H 1.09003 * 109.47326 * 330.02301 * 26 25 16 44 44 H 1.09009 * 109.47344 * 180.02562 * 30 29 27 45 45 H 1.09005 * 109.47390 * 300.00086 * 30 29 27 46 46 H 1.08996 * 109.47231 * 59.99887 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4441 0.1239 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3373 2.1734 9 14 6.0050 0.8797 1.3812 10 1 6.4428 2.1125 2.0838 11 1 6.4390 -0.3114 2.1547 12 1 6.6131 0.8391 0.0271 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3669 15 8 -0.3414 2.6327 -0.4313 16 6 0.0466 3.3224 -2.6234 17 7 0.8368 3.4243 -3.7519 18 1 1.7379 3.0772 -3.8436 19 6 0.1359 4.0982 -4.7238 20 6 0.4399 4.4754 -6.0292 21 6 -0.4903 5.1606 -6.7778 22 6 -1.7322 5.4813 -6.2436 23 6 -2.0532 5.1224 -4.9670 24 6 -1.1238 4.4246 -4.1847 25 6 -1.1493 3.9219 -2.8613 26 6 -2.2969 4.0319 -1.8908 27 6 -2.1575 5.3005 -1.0896 28 8 -1.2219 6.0394 -1.2860 29 8 -3.0727 5.6097 -0.1576 30 6 -2.8743 6.8468 0.5762 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.8292 -0.0611 2.9500 37 1 2.2721 2.1230 -1.9977 38 1 1.4027 4.2312 -6.4531 39 1 -0.2524 5.4517 -7.7902 40 1 -2.4505 6.0188 -6.8449 41 1 -3.0209 5.3765 -4.5603 42 1 -3.2376 4.0513 -2.4412 43 1 -2.2873 3.1743 -1.2181 44 1 -3.6824 6.9757 1.2964 45 1 -1.9211 6.8077 1.1035 46 1 -2.8703 7.6855 -0.1199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:07 Heat of formation + Delta-G solvation = -90.060961 kcal Electronic energy + Delta-G solvation = -30513.167900 eV Core-core repulsion = 26367.320079 eV Total energy + Delta-G solvation = -4145.847821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78207 -41.27914 -40.50782 -37.81929 -37.48301 -37.01293 -34.68052 -34.13229 -32.90952 -31.38477 -30.49750 -29.47517 -28.88806 -27.72545 -25.55067 -24.44197 -23.14497 -22.67260 -22.06543 -21.28111 -20.46003 -19.54816 -18.67317 -18.43876 -17.97141 -17.47175 -17.42723 -17.26709 -16.64578 -16.42584 -16.22766 -15.54583 -15.31681 -15.16956 -14.79236 -14.70652 -14.60296 -14.40799 -14.23011 -13.87425 -13.82592 -13.53001 -13.20544 -13.11337 -12.92247 -12.91318 -12.73248 -12.51805 -12.51476 -12.19842 -12.10013 -11.81379 -11.78986 -11.60721 -11.60638 -11.11708 -10.93187 -10.73032 -10.57190 -9.81392 -9.19413 -8.72805 -8.20283 -6.37909 -0.23796 0.69687 1.02640 1.24180 1.41800 1.42459 1.52482 1.80020 1.95322 2.25342 2.40791 2.48101 2.98656 3.09486 3.62431 3.76388 3.81638 4.01567 4.07305 4.26600 4.29732 4.30877 4.37817 4.47967 4.52741 4.56095 4.58201 4.61752 4.67339 4.72650 4.83305 4.88805 5.04025 5.16118 5.23775 5.36737 5.39883 5.45436 5.49250 5.54458 5.58041 5.65984 5.70599 5.75554 5.85713 6.11824 6.15434 6.42529 6.66943 6.76711 6.80503 7.22136 7.38115 8.84969 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003512 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.270545 B = 7971.527224 C = 9446.744758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.261 1.261 13 N -0.698 5.698 14 C 0.567 3.433 15 O -0.557 6.557 16 C 0.023 3.977 17 N -0.567 5.567 18 H 0.428 0.572 19 C 0.100 3.900 20 C -0.139 4.139 21 C -0.086 4.086 22 C -0.145 4.145 23 C -0.076 4.076 24 C -0.126 4.126 25 C -0.088 4.088 26 C -0.047 4.047 27 C 0.470 3.530 28 O -0.537 6.537 29 O -0.364 6.364 30 C 0.029 3.971 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.266 0.734 37 H 0.397 0.603 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.135 0.865 42 H 0.146 0.854 43 H 0.121 0.879 44 H 0.135 0.865 45 H 0.046 0.954 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 9.170 -16.871 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.021 0.979 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.185 1.185 13 N -0.346 5.346 14 C 0.353 3.647 15 O -0.437 6.437 16 C -0.088 4.088 17 N -0.172 5.172 18 H 0.268 0.732 19 C -0.010 4.010 20 C -0.159 4.159 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.098 4.098 26 C -0.084 4.084 27 C 0.315 3.685 28 O -0.427 6.427 29 O -0.280 6.280 30 C -0.064 4.064 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.170 0.830 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.139 0.861 44 H 0.153 0.847 45 H 0.064 0.936 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.570 9.186 -15.981 21.763 hybrid contribution 1.996 -0.141 0.630 2.098 sum -9.573 9.045 -15.350 20.226 Atomic orbital electron populations 1.21690 0.96690 0.99408 1.00402 1.21778 0.94022 0.98650 1.01438 1.18452 0.93782 0.89365 0.80623 0.97941 1.21535 0.91313 1.39328 1.06917 0.91295 1.25716 1.03205 0.94260 0.94952 1.70027 1.37038 1.38034 1.09758 0.85401 0.79216 0.77447 0.78613 1.20650 1.20710 1.18507 1.46189 1.14710 1.55745 1.17973 1.17518 0.82633 0.78485 0.86038 1.90742 1.52075 1.61195 1.39679 1.19985 0.93443 1.07165 0.88167 1.41823 1.16089 1.49307 1.09991 0.73165 1.18671 0.92069 0.98273 0.91996 1.20439 1.02166 1.03096 0.90193 1.21314 0.92645 0.96018 1.00523 1.21014 0.98087 1.02148 0.95140 1.20626 0.98477 0.96241 0.94166 1.18211 0.95988 1.05130 0.93670 1.18866 0.94112 1.02248 0.94578 1.19849 0.98867 0.93798 0.95930 1.23968 0.79138 0.87488 0.77944 1.90636 1.32875 1.52273 1.66876 1.86480 1.49986 1.43340 1.48222 1.23502 1.03804 0.82991 0.96071 0.93388 0.95108 0.93832 0.94082 0.90722 0.92467 0.76854 0.83801 0.82299 0.82972 0.84680 0.83655 0.86114 0.84677 0.93553 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 14.28 2.24 44.24 0.10 14.37 16 4 H 0.00 0.16 7.58 -2.39 -0.02 0.15 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.47 11.29 21.45 0.24 -51.22 16 9 Si 0.97 41.87 29.54 68.60 2.03 43.89 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.70 -29.19 5.02 -449.73 -2.26 -31.45 16 14 C 0.57 23.43 6.36 86.56 0.55 23.98 16 15 O -0.56 -26.00 11.70 -4.17 -0.05 -26.05 16 16 C 0.02 0.81 6.97 39.91 0.28 1.09 16 17 N -0.57 -15.71 6.07 -177.18 -1.08 -16.78 16 18 H 0.43 9.65 8.12 -92.71 -0.75 8.90 16 19 C 0.10 2.59 7.25 39.14 0.28 2.87 16 20 C -0.14 -2.66 10.08 22.37 0.23 -2.44 16 21 C -0.09 -1.33 10.01 22.30 0.22 -1.10 16 22 C -0.15 -2.38 9.97 22.02 0.22 -2.16 16 23 C -0.08 -1.63 10.06 22.30 0.22 -1.41 16 24 C -0.13 -3.49 6.11 -21.36 -0.13 -3.62 16 25 C -0.09 -2.83 4.67 -19.59 -0.09 -2.92 16 26 C -0.05 -1.38 5.69 29.10 0.17 -1.21 16 27 C 0.47 15.65 7.95 71.23 0.57 16.22 16 28 O -0.54 -21.31 15.78 21.97 0.35 -20.97 16 29 O -0.36 -10.55 10.57 -51.41 -0.54 -11.09 16 30 C 0.03 0.67 10.56 113.37 1.20 1.86 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.03 1.45 7.84 -2.39 -0.02 1.43 16 33 H 0.04 1.84 5.65 -2.38 -0.01 1.83 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 4.04 5.95 -2.39 -0.01 4.03 16 36 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 37 H 0.40 14.11 7.59 -92.71 -0.70 13.41 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.12 3.91 6.31 -2.39 -0.02 3.89 16 44 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.05 1.20 8.13 -2.38 -0.02 1.18 16 46 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -73.31 383.34 3.53 -69.77 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.42 Total: 36.23 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.26 Total: 7.66 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.09 Total: -99.46 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -0.25 Total: -58.11 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -73.31 3.53 -69.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.287 kcal (2) G-P(sol) polarization free energy of solvation -73.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds