Wall clock time and date at job start Wed Apr 1 2020 02:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.43804 * 2 1 4 4 O 1.21284 * 119.99937 * 100.83792 * 3 2 1 5 5 N 1.34775 * 120.00421 * 280.84235 * 3 2 1 6 6 C 1.46926 * 120.63172 * 185.45363 * 5 3 2 7 7 C 1.52762 * 109.00777 * 233.58048 * 6 5 3 8 8 C 1.53037 * 109.38428 * 305.59138 * 7 6 5 9 9 C 1.50703 * 109.44603 * 181.25527 * 8 7 6 10 10 H 1.07998 * 119.99765 * 239.93820 * 9 8 7 11 11 C 1.37878 * 120.00301 * 59.93662 * 9 8 7 12 12 N 1.31509 * 119.99768 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99992 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47265 * 90.00064 * 13 11 9 15 15 H 1.48502 * 109.47204 * 209.99953 * 13 11 9 16 16 H 1.48507 * 109.47375 * 330.00050 * 13 11 9 17 17 C 1.53037 * 109.53851 * 61.23784 * 8 7 6 18 18 C 1.46927 * 120.63069 * 5.73419 * 5 3 2 19 19 O 1.42925 * 109.43529 * 240.08867 * 2 1 3 20 20 C 1.36014 * 117.01085 * 285.36768 * 19 2 1 21 21 C 1.38445 * 120.43531 * 148.74508 * 20 19 2 22 22 C 1.38299 * 119.90316 * 179.18700 * 21 20 19 23 23 C 1.38281 * 120.23712 * 0.05467 * 22 21 20 24 24 C 1.38266 * 120.18930 * 359.73985 * 23 22 21 25 25 C 1.38576 * 119.84838 * 0.59477 * 24 23 22 26 26 N 1.40152 * 120.54252 * 178.80348 * 25 24 23 27 27 C 1.34965 * 119.18769 * 191.52710 * 26 25 24 28 28 O 1.21287 * 120.14401 * 186.06388 * 27 26 25 29 29 H 1.09002 * 109.46764 * 179.91696 * 1 2 3 30 30 H 1.08996 * 109.46727 * 299.91386 * 1 2 3 31 31 H 1.09002 * 109.47308 * 59.91261 * 1 2 3 32 32 H 1.08996 * 109.58775 * 353.41739 * 6 5 3 33 33 H 1.09006 * 109.58535 * 113.84426 * 6 5 3 34 34 H 1.09002 * 109.56418 * 185.55318 * 7 6 5 35 35 H 1.09000 * 109.38235 * 65.52129 * 7 6 5 36 36 H 1.09001 * 109.45730 * 301.21861 * 8 7 6 37 37 H 0.97007 * 120.00218 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.49456 * 178.68232 * 17 8 7 39 39 H 1.09000 * 109.52457 * 58.60807 * 17 8 7 40 40 H 1.09000 * 109.58407 * 246.16074 * 18 5 3 41 41 H 1.09004 * 109.58515 * 6.43473 * 18 5 3 42 42 H 1.07996 * 120.04707 * 359.20364 * 21 20 19 43 43 H 1.07992 * 119.88412 * 179.78096 * 22 21 20 44 44 H 1.07993 * 119.90848 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.07731 * 180.34971 * 24 23 22 46 46 H 0.96995 * 120.40744 * 11.50028 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 2.4196 1.9272 1.0316 5 7 2.0488 2.1297 -1.1463 6 6 2.6440 3.4724 -1.1875 7 6 1.6227 4.4519 -1.7629 8 6 1.1347 3.9383 -3.1195 9 6 0.1501 4.9190 -3.7026 10 1 -0.8597 4.6048 -3.9215 11 6 0.5384 6.2174 -3.9564 12 7 1.7682 6.5999 -3.6902 13 14 -0.6818 7.4327 -4.6798 14 1 -1.4011 8.1255 -3.5808 15 1 0.0444 8.4324 -5.5036 16 1 -1.6589 6.7064 -5.5302 17 6 0.4543 2.5796 -2.9377 18 6 1.4673 1.5767 -2.3771 19 8 2.0056 -0.6721 -1.1683 20 6 1.9083 -2.0287 -1.1832 21 6 1.7133 -2.7048 -2.3755 22 6 1.6328 -4.0854 -2.3800 23 6 1.7452 -4.7934 -1.1975 24 6 1.9443 -4.1254 -0.0034 25 6 2.0189 -2.7417 0.0087 26 7 2.1954 -2.0484 1.2139 27 6 2.0311 -0.7089 1.2329 28 8 2.2857 -0.0782 2.2371 29 1 -0.3633 -1.0277 -0.0015 30 1 -0.3632 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8892 32 1 2.9172 3.7821 -0.1788 33 1 3.5310 3.4596 -1.8210 34 1 2.0864 5.4302 -1.8896 35 1 0.7773 4.5357 -1.0800 36 1 1.9840 3.8318 -3.7943 37 1 2.0413 7.5135 -3.8684 38 1 0.0863 2.2254 -3.9006 39 1 -0.3804 2.6801 -2.2440 40 1 2.2564 1.4061 -3.1094 41 1 0.9666 0.6346 -2.1534 42 1 1.6245 -2.1548 -3.3007 43 1 1.4771 -4.6122 -3.3098 44 1 1.6811 -5.8714 -1.2072 45 1 2.0375 -4.6805 0.9183 46 1 2.4323 -2.5255 2.0245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:10 Heat of formation + Delta-G solvation = -63.015095 kcal Electronic energy + Delta-G solvation = -31436.254727 eV Core-core repulsion = 27291.579703 eV Total energy + Delta-G solvation = -4144.675025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11606 -39.78911 -38.90402 -37.75513 -36.79393 -35.30251 -33.60090 -32.49954 -31.04350 -30.64055 -30.05509 -29.28410 -26.50264 -25.36766 -24.15480 -23.19804 -22.99186 -22.30212 -20.82725 -19.50956 -19.33248 -18.49761 -17.90959 -16.85915 -16.59131 -16.25978 -16.09069 -15.83058 -15.38668 -14.92791 -14.79951 -14.59872 -14.52490 -14.21055 -13.82514 -13.44909 -13.39672 -13.15505 -12.84716 -12.77035 -12.68104 -12.33900 -12.26487 -12.19114 -11.87004 -11.67219 -11.36284 -11.17070 -11.06064 -10.93539 -10.65391 -10.40033 -10.24991 -10.08544 -9.57866 -9.50506 -9.14348 -8.98610 -8.92040 -8.37706 -8.21155 -8.02733 -6.02102 -4.08847 0.77700 0.92558 2.02541 2.39675 2.55765 3.06155 3.28819 3.29676 3.36173 3.38218 3.44342 3.73377 4.26887 4.40628 4.42377 4.47649 4.61335 4.88368 4.94964 5.04822 5.22325 5.27670 5.29419 5.43638 5.50521 5.68740 5.74117 5.80396 5.84736 5.94497 6.09580 6.11568 6.22515 6.25967 6.35403 6.43115 6.45098 6.53205 6.61841 6.80491 6.95320 7.00077 7.17965 7.31872 7.62730 7.68875 7.79322 7.92664 8.05521 8.36784 8.40851 8.94495 9.56345 11.03333 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.003078 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.180975 B = 9093.177429 C =10083.190047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 C 0.530 3.470 4 O -0.505 6.505 5 N -0.582 5.582 6 C 0.109 3.891 7 C -0.123 4.123 8 C 0.049 3.951 9 C -0.513 4.513 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.126 4.126 18 C 0.101 3.899 19 O -0.283 6.283 20 C 0.075 3.925 21 C -0.103 4.103 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.129 4.129 25 C 0.098 3.902 26 N -0.663 5.663 27 C 0.502 3.498 28 O -0.457 6.457 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 -23.792 3.703 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.046 3.954 3 C 0.312 3.688 4 O -0.380 6.380 5 N -0.314 5.314 6 C -0.012 4.012 7 C -0.162 4.162 8 C 0.030 3.970 9 C -0.551 4.551 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.529 5.529 13 Si 0.719 3.281 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.164 4.164 18 C -0.021 4.021 19 O -0.197 6.197 20 C 0.029 3.971 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.150 4.150 25 C 0.002 3.998 26 N -0.312 5.312 27 C 0.286 3.714 28 O -0.326 6.326 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.243 -22.649 4.579 23.109 hybrid contribution -0.589 0.291 0.065 0.661 sum -0.833 -22.358 4.644 22.850 Atomic orbital electron populations 1.22435 0.89984 1.04435 1.06104 1.22176 0.97659 0.92537 0.83022 1.19128 0.79953 0.85032 0.84658 1.90831 1.46750 1.69457 1.30981 1.48140 1.56795 1.17685 1.08779 1.21900 0.97010 0.80512 1.01761 1.21954 0.96740 0.99912 0.97570 1.18638 0.95618 0.89810 0.92902 1.21177 0.97521 0.95139 1.41307 0.92708 1.24965 0.95141 0.98331 0.95540 1.69838 1.16761 1.17969 1.48298 0.86623 0.81279 0.81094 0.79155 1.20760 1.21271 1.19972 1.22058 0.97272 0.97499 0.99550 1.22147 0.97262 0.97046 0.85604 1.86509 1.79371 1.15751 1.38109 1.18691 1.02857 0.82639 0.92931 1.20617 1.00916 0.94208 0.96437 1.21006 1.00644 0.92937 0.98660 1.20961 1.00244 1.00151 0.91684 1.20619 1.03898 0.90876 0.99581 1.18102 1.03956 0.92528 0.85216 1.43723 1.69356 1.07390 1.10682 1.20661 0.78456 0.81900 0.90371 1.90905 1.44788 1.63959 1.32917 0.90546 0.89335 0.88385 0.90485 0.91873 0.87662 0.94253 0.95362 0.92933 0.91911 0.92977 0.91586 0.89710 0.83995 0.84847 0.85186 0.85095 0.74498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 8.30 37.16 0.31 -1.82 16 2 C 0.09 1.37 0.66 -92.88 -0.06 1.31 16 3 C 0.53 9.99 6.64 -10.99 -0.07 9.92 16 4 O -0.51 -11.29 14.00 -18.17 -0.25 -11.55 16 5 N -0.58 -10.79 2.98 -173.03 -0.52 -11.31 16 6 C 0.11 2.22 6.41 -3.93 -0.03 2.19 16 7 C -0.12 -2.84 5.14 -26.83 -0.14 -2.97 16 8 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 9 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 12 N -0.89 -24.61 11.31 55.43 0.63 -23.98 16 13 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.13 -2.37 5.30 -26.62 -0.14 -2.51 16 18 C 0.10 1.66 5.09 -3.72 -0.02 1.64 16 19 O -0.28 -3.82 6.87 -19.79 -0.14 -3.96 16 20 C 0.08 0.84 5.92 -39.10 -0.23 0.61 16 21 C -0.10 -0.90 9.99 -39.48 -0.39 -1.29 16 22 C -0.11 -0.76 10.04 -39.54 -0.40 -1.16 16 23 C -0.11 -0.70 10.04 -39.56 -0.40 -1.09 16 24 C -0.13 -0.94 9.94 -39.45 -0.39 -1.33 16 25 C 0.10 0.99 6.57 -83.52 -0.55 0.44 16 26 N -0.66 -7.46 5.46 -9.70 -0.05 -7.51 16 27 C 0.50 7.69 6.89 -10.86 -0.07 7.62 16 28 O -0.46 -8.70 15.51 -18.17 -0.28 -8.98 16 29 H 0.08 0.78 7.84 -51.93 -0.41 0.37 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.18 6.36 -51.93 -0.33 0.85 16 32 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.11 2.70 6.03 -51.93 -0.31 2.39 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.19 3.64 -51.93 -0.19 1.00 16 42 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.42 3.64 8.87 -40.82 -0.36 3.28 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -32.59 364.86 -9.46 -42.04 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.16 Total: 3.68 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.16 Total: 0.29 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.06 Total: -42.80 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.67 Total: -24.49 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.59 -9.46 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.973 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds