Wall clock time and date at job start Wed Apr 1 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.43804 * 2 1 4 4 O 1.21284 * 119.99937 * 100.83792 * 3 2 1 5 5 N 1.34775 * 120.00421 * 280.84235 * 3 2 1 6 6 C 1.46926 * 120.63172 * 185.45363 * 5 3 2 7 7 C 1.52762 * 109.00777 * 233.58048 * 6 5 3 8 8 C 1.53037 * 109.38428 * 305.59138 * 7 6 5 9 9 C 1.50703 * 109.44603 * 181.25527 * 8 7 6 10 10 H 1.07998 * 119.99765 * 239.93820 * 9 8 7 11 11 C 1.37878 * 120.00301 * 59.93662 * 9 8 7 12 12 N 1.31509 * 119.99768 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99992 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47265 * 90.00064 * 13 11 9 15 15 H 1.48502 * 109.47204 * 209.99953 * 13 11 9 16 16 H 1.48507 * 109.47375 * 330.00050 * 13 11 9 17 17 C 1.53037 * 109.53851 * 61.23784 * 8 7 6 18 18 C 1.46927 * 120.63069 * 5.73419 * 5 3 2 19 19 O 1.42925 * 109.43529 * 240.08867 * 2 1 3 20 20 C 1.36014 * 117.01085 * 285.36768 * 19 2 1 21 21 C 1.38445 * 120.43531 * 148.74508 * 20 19 2 22 22 C 1.38299 * 119.90316 * 179.18700 * 21 20 19 23 23 C 1.38281 * 120.23712 * 0.05467 * 22 21 20 24 24 C 1.38266 * 120.18930 * 359.73985 * 23 22 21 25 25 C 1.38576 * 119.84838 * 0.59477 * 24 23 22 26 26 N 1.40152 * 120.54252 * 178.80348 * 25 24 23 27 27 C 1.34965 * 119.18769 * 191.52710 * 26 25 24 28 28 O 1.21287 * 120.14401 * 186.06388 * 27 26 25 29 29 H 1.09002 * 109.46764 * 179.91696 * 1 2 3 30 30 H 1.08996 * 109.46727 * 299.91386 * 1 2 3 31 31 H 1.09002 * 109.47308 * 59.91261 * 1 2 3 32 32 H 1.08996 * 109.58775 * 353.41739 * 6 5 3 33 33 H 1.09006 * 109.58535 * 113.84426 * 6 5 3 34 34 H 1.09002 * 109.56418 * 185.55318 * 7 6 5 35 35 H 1.09000 * 109.38235 * 65.52129 * 7 6 5 36 36 H 1.09001 * 109.45730 * 301.21861 * 8 7 6 37 37 H 0.97007 * 120.00218 * 180.02562 * 12 11 9 38 38 H 1.09000 * 109.49456 * 178.68232 * 17 8 7 39 39 H 1.09000 * 109.52457 * 58.60807 * 17 8 7 40 40 H 1.09000 * 109.58407 * 246.16074 * 18 5 3 41 41 H 1.09004 * 109.58515 * 6.43473 * 18 5 3 42 42 H 1.07996 * 120.04707 * 359.20364 * 21 20 19 43 43 H 1.07992 * 119.88412 * 179.78096 * 22 21 20 44 44 H 1.07993 * 119.90848 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.07731 * 180.34971 * 24 23 22 46 46 H 0.96995 * 120.40744 * 11.50028 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 2.4196 1.9272 1.0316 5 7 2.0488 2.1297 -1.1463 6 6 2.6440 3.4724 -1.1875 7 6 1.6227 4.4519 -1.7629 8 6 1.1347 3.9383 -3.1195 9 6 0.1501 4.9190 -3.7026 10 1 -0.8597 4.6048 -3.9215 11 6 0.5384 6.2174 -3.9564 12 7 1.7682 6.5999 -3.6902 13 14 -0.6818 7.4327 -4.6798 14 1 -1.4011 8.1255 -3.5808 15 1 0.0444 8.4324 -5.5036 16 1 -1.6589 6.7064 -5.5302 17 6 0.4543 2.5796 -2.9377 18 6 1.4673 1.5767 -2.3771 19 8 2.0056 -0.6721 -1.1683 20 6 1.9083 -2.0287 -1.1832 21 6 1.7133 -2.7048 -2.3755 22 6 1.6328 -4.0854 -2.3800 23 6 1.7452 -4.7934 -1.1975 24 6 1.9443 -4.1254 -0.0034 25 6 2.0189 -2.7417 0.0087 26 7 2.1954 -2.0484 1.2139 27 6 2.0311 -0.7089 1.2329 28 8 2.2857 -0.0782 2.2371 29 1 -0.3633 -1.0277 -0.0015 30 1 -0.3632 0.5125 0.8907 31 1 -0.3634 0.5152 -0.8892 32 1 2.9172 3.7821 -0.1788 33 1 3.5310 3.4596 -1.8210 34 1 2.0864 5.4302 -1.8896 35 1 0.7773 4.5357 -1.0800 36 1 1.9840 3.8318 -3.7943 37 1 2.0413 7.5135 -3.8684 38 1 0.0863 2.2254 -3.9006 39 1 -0.3804 2.6801 -2.2440 40 1 2.2564 1.4061 -3.1094 41 1 0.9666 0.6346 -2.1534 42 1 1.6245 -2.1548 -3.3007 43 1 1.4771 -4.6122 -3.3098 44 1 1.6811 -5.8714 -1.2072 45 1 2.0375 -4.6805 0.9183 46 1 2.4323 -2.5255 2.0245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601422050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:09 Heat of formation + Delta-G solvation = -82.763610 kcal Electronic energy + Delta-G solvation = -31437.111087 eV Core-core repulsion = 27291.579703 eV Total energy + Delta-G solvation = -4145.531384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.14088 -41.04320 -40.03041 -38.67467 -38.39776 -36.21502 -35.39608 -33.70100 -32.80162 -31.65124 -31.29285 -30.01391 -28.22183 -26.60613 -25.26038 -24.56754 -23.97855 -23.66592 -22.21762 -20.80218 -20.36472 -19.71295 -18.99763 -18.42240 -17.89961 -17.43013 -17.21095 -17.06645 -16.54480 -16.47292 -16.06193 -15.79768 -15.52977 -15.13836 -14.99158 -14.81552 -14.64151 -14.49579 -14.38009 -14.11217 -13.89974 -13.72637 -13.53151 -13.08247 -13.05102 -12.98985 -12.79804 -12.66249 -12.43913 -12.17224 -12.12214 -11.93687 -11.88924 -11.42762 -11.38764 -11.08619 -10.84583 -10.68497 -10.39643 -9.65582 -9.62710 -8.97748 -8.06146 -6.19749 0.02384 0.32336 0.96395 1.28424 1.40498 1.42674 1.44571 1.53339 1.81112 2.18923 2.45366 2.66962 2.81250 3.14383 3.20919 3.40674 3.60555 4.04834 4.10626 4.20609 4.24679 4.32139 4.35414 4.40064 4.43472 4.46932 4.56264 4.61942 4.68037 4.74759 4.82844 4.95053 4.96934 5.07500 5.15011 5.24696 5.27501 5.42666 5.48408 5.51118 5.59001 5.66566 5.67173 5.72499 5.98781 6.10593 6.18987 6.31873 6.39224 6.63375 6.89993 6.92044 7.48496 8.97534 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.003078 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.180975 B = 9093.177429 C =10083.190047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 C 0.524 3.476 4 O -0.548 6.548 5 N -0.584 5.584 6 C 0.119 3.881 7 C -0.111 4.111 8 C 0.045 3.955 9 C -0.529 4.529 10 H 0.056 0.944 11 C 0.012 3.988 12 N -0.917 5.917 13 Si 0.950 3.050 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.265 1.265 17 C -0.117 4.117 18 C 0.109 3.891 19 O -0.292 6.292 20 C 0.045 3.955 21 C -0.108 4.108 22 C -0.104 4.104 23 C -0.103 4.103 24 C -0.120 4.120 25 C 0.073 3.927 26 N -0.647 5.647 27 C 0.499 3.501 28 O -0.510 6.510 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.005 0.995 37 H 0.260 0.740 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.150 0.850 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.156 0.844 46 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -27.787 2.280 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C 0.308 3.692 4 O -0.426 6.426 5 N -0.315 5.315 6 C -0.003 4.003 7 C -0.150 4.150 8 C 0.027 3.973 9 C -0.567 4.567 10 H 0.074 0.926 11 C -0.187 4.187 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.155 4.155 18 C -0.012 4.012 19 O -0.208 6.208 20 C -0.001 4.001 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.021 4.021 26 N -0.295 5.295 27 C 0.283 3.717 28 O -0.382 6.382 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.023 0.977 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.168 0.832 43 H 0.181 0.819 44 H 0.181 0.819 45 H 0.174 0.826 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -1.584 -26.728 3.107 26.955 hybrid contribution -0.150 1.342 0.417 1.413 sum -1.735 -25.387 3.523 25.689 Atomic orbital electron populations 1.22441 0.88048 1.06070 1.05870 1.21824 0.98823 0.90115 0.83920 1.19783 0.78963 0.86682 0.83725 1.90801 1.48421 1.70937 1.32399 1.48173 1.56731 1.16874 1.09732 1.21588 0.96418 0.81396 1.00927 1.21710 0.96485 0.99288 0.97487 1.18614 0.94684 0.92008 0.91999 1.21581 0.98050 0.95953 1.41138 0.92575 1.25718 0.96670 1.00151 0.96123 1.69979 1.18296 1.18160 1.49202 0.85675 0.79331 0.78945 0.78397 1.20779 1.21205 1.18915 1.21924 0.97382 0.95526 1.00629 1.22224 0.96976 0.97314 0.84681 1.86433 1.79946 1.17566 1.36853 1.19049 1.05246 0.81415 0.94380 1.20869 1.00693 0.95252 0.95857 1.21427 0.98564 0.92059 1.00215 1.21424 0.98061 1.01839 0.90830 1.20984 1.02149 0.89604 1.01335 1.18339 1.06008 0.93608 0.84184 1.43523 1.68033 1.06087 1.11879 1.20746 0.78111 0.83076 0.89725 1.90879 1.47513 1.65367 1.34490 0.87935 0.90187 0.87935 0.91506 0.91490 0.90673 0.95749 0.97685 0.93128 0.90232 0.93114 0.90817 0.86648 0.83198 0.81929 0.81860 0.82635 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.30 71.98 0.60 -3.35 16 2 C 0.10 2.93 0.66 -12.26 -0.01 2.92 16 3 C 0.52 20.28 6.64 87.66 0.58 20.86 16 4 O -0.55 -25.76 14.00 19.64 0.27 -25.48 16 5 N -0.58 -22.02 2.98 -819.75 -2.44 -24.46 16 6 C 0.12 5.05 6.41 86.22 0.55 5.60 16 7 C -0.11 -5.34 5.14 30.53 0.16 -5.19 16 8 C 0.05 2.17 2.07 -11.51 -0.02 2.15 16 9 C -0.53 -28.06 8.56 25.60 0.22 -27.85 16 10 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 11 C 0.01 0.65 5.30 84.66 0.45 1.09 16 12 N -0.92 -52.19 11.31 21.45 0.24 -51.95 16 13 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 18 C 0.11 3.47 5.09 86.36 0.44 3.91 16 19 O -0.29 -7.52 6.87 -93.71 -0.64 -8.17 16 20 C 0.04 0.89 5.92 22.58 0.13 1.02 16 21 C -0.11 -1.51 9.99 22.33 0.22 -1.29 16 22 C -0.10 -0.88 10.04 22.29 0.22 -0.66 16 23 C -0.10 -0.74 10.04 22.29 0.22 -0.52 16 24 C -0.12 -1.26 9.94 22.36 0.22 -1.04 16 25 C 0.07 1.30 6.57 38.15 0.25 1.55 16 26 N -0.65 -13.80 5.46 -302.88 -1.65 -15.46 16 27 C 0.50 15.40 6.89 87.65 0.60 16.00 16 28 O -0.51 -20.23 15.51 19.63 0.30 -19.92 16 29 H 0.10 1.86 7.84 -2.39 -0.02 1.85 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.10 2.30 6.36 -2.39 -0.02 2.28 16 32 H 0.07 2.96 7.00 -2.39 -0.02 2.95 16 33 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 34 H 0.07 4.08 6.03 -2.39 -0.01 4.07 16 35 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 38 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 41 H 0.12 3.01 3.64 -2.39 -0.01 3.00 16 42 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 44 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 45 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 46 H 0.43 6.98 8.87 -92.71 -0.82 6.15 16 Total: -1.00 -74.83 364.86 3.32 -71.51 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.20 Total: 17.81 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.01 Total: 11.07 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.85 Total: -91.87 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.06 Total: -53.57 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.83 3.32 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.252 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds