Wall clock time and date at job start Wed Apr 1 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.43512 * 2 1 4 4 O 1.21284 * 120.00305 * 258.62601 * 3 2 1 5 5 N 1.34784 * 119.99760 * 78.35008 * 3 2 1 6 6 C 1.46925 * 120.62870 * 174.30181 * 5 3 2 7 7 C 1.53632 * 108.54058 * 126.37018 * 6 5 3 8 8 C 1.53032 * 109.23842 * 54.85766 * 7 6 5 9 9 C 1.50697 * 109.45910 * 178.49200 * 8 7 6 10 10 H 1.08003 * 120.00096 * 120.06734 * 9 8 7 11 11 C 1.37884 * 120.00137 * 300.06733 * 9 8 7 12 12 N 1.31513 * 119.99319 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00267 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47177 * 89.99945 * 13 11 9 15 15 H 1.48498 * 109.47264 * 210.00025 * 13 11 9 16 16 H 1.48502 * 109.47409 * 329.99917 * 13 11 9 17 17 C 1.53042 * 109.54227 * 298.50788 * 8 7 6 18 18 C 1.46923 * 120.63049 * 354.58645 * 5 3 2 19 19 O 1.42926 * 109.43957 * 119.92040 * 2 1 3 20 20 C 1.35927 * 117.05135 * 165.45219 * 19 2 1 21 21 C 1.38443 * 120.44816 * 148.86156 * 20 19 2 22 22 C 1.38299 * 119.89516 * 178.39829 * 21 20 19 23 23 C 1.38276 * 120.23510 * 0.02690 * 22 21 20 24 24 C 1.38258 * 120.19809 * 0.29848 * 23 22 21 25 25 C 1.38578 * 119.84629 * 359.94438 * 24 23 22 26 26 N 1.40150 * 120.55473 * 179.36358 * 25 24 23 27 27 C 1.34958 * 119.20021 * 190.97521 * 26 25 24 28 28 O 1.21298 * 120.13376 * 185.99283 * 27 26 25 29 29 H 1.08995 * 109.47105 * 59.99719 * 1 2 3 30 30 H 1.09001 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46716 * 299.99453 * 1 2 3 32 32 H 1.08997 * 109.59072 * 246.20532 * 6 5 3 33 33 H 1.09001 * 109.58605 * 6.63146 * 6 5 3 34 34 H 1.09005 * 109.63217 * 294.86931 * 7 6 5 35 35 H 1.08997 * 109.45832 * 174.74163 * 7 6 5 36 36 H 1.09000 * 109.45410 * 58.52541 * 8 7 6 37 37 H 0.97003 * 119.99381 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.49782 * 301.42144 * 17 8 7 39 39 H 1.08993 * 109.52775 * 181.33176 * 17 8 7 40 40 H 1.08997 * 109.58801 * 353.37366 * 18 5 3 41 41 H 1.09000 * 109.58891 * 113.65308 * 18 5 3 42 42 H 1.07999 * 120.05276 * 358.42334 * 21 20 19 43 43 H 1.07998 * 119.87950 * 180.02562 * 22 21 20 44 44 H 1.08009 * 119.90076 * 180.29528 * 23 22 21 45 45 H 1.07995 * 120.08397 * 179.97438 * 24 23 22 46 46 H 0.97002 * 120.40100 * 10.95076 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 2.4286 1.9241 -1.0297 5 7 2.0334 2.1350 1.1432 6 6 2.6327 3.4758 1.1875 7 6 1.5916 4.4581 1.7455 8 6 1.0921 3.9483 3.0992 9 6 0.0977 4.9271 3.6685 10 1 -0.9129 4.6095 3.8789 11 6 0.4781 6.2282 3.9208 12 7 1.7089 6.6147 3.6651 13 14 -0.7546 7.4417 4.6257 14 1 -0.6978 7.3997 6.1091 15 1 -0.4248 8.8114 4.1563 16 1 -2.1214 7.0788 4.1723 17 6 0.4190 2.5860 2.9166 18 6 1.4418 1.5848 2.3704 19 8 2.0057 -0.6723 1.1682 20 6 3.3164 -1.0321 1.1837 21 6 4.0178 -1.0757 2.3765 22 6 5.3418 -1.4753 2.3834 23 6 5.9679 -1.8310 1.2029 24 6 5.2758 -1.7834 0.0069 25 6 3.9504 -1.3791 -0.0073 26 7 3.2387 -1.3127 -1.2128 27 6 2.0318 -0.7091 -1.2325 28 8 1.3535 -0.7365 -2.2378 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 3.5102 3.4627 1.8340 33 1 2.9219 3.7801 0.1816 34 1 0.7528 4.5349 1.0537 35 1 2.0494 5.4390 1.8726 36 1 1.9351 3.8480 3.7829 37 1 1.9763 7.5301 3.8422 38 1 -0.4087 2.6805 2.2137 39 1 0.0425 2.2340 3.8769 40 1 0.9451 0.6410 2.1453 41 1 2.2244 1.4182 3.1105 42 1 3.5317 -0.7986 3.3002 43 1 5.8886 -1.5097 3.3141 44 1 7.0007 -2.1468 1.2151 45 1 5.7667 -2.0612 -0.9140 46 1 3.6092 -1.6957 -2.0234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:13 Heat of formation + Delta-G solvation = -66.913319 kcal Electronic energy + Delta-G solvation = -31847.005535 eV Core-core repulsion = 27702.161470 eV Total energy + Delta-G solvation = -4144.844064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16055 -39.67048 -39.03916 -37.69115 -36.90042 -35.39398 -33.64076 -32.60156 -31.10569 -30.54440 -30.04648 -29.17231 -26.53501 -25.42626 -23.79731 -23.19456 -23.04588 -22.44084 -21.07706 -19.57328 -19.35313 -18.44845 -18.00742 -17.22416 -16.55597 -16.38430 -15.99970 -15.58964 -15.44221 -14.97184 -14.75821 -14.55367 -14.44392 -14.16411 -13.85794 -13.45585 -13.42103 -13.14792 -12.85075 -12.78388 -12.62031 -12.41176 -12.26932 -12.16256 -11.92264 -11.68271 -11.33219 -11.21409 -11.04104 -10.96515 -10.66804 -10.45342 -10.34732 -10.13653 -9.73345 -9.62886 -9.21949 -8.98351 -8.86455 -8.40676 -8.18243 -8.09637 -6.04794 -4.11438 0.83221 0.99790 1.99512 2.40707 2.51391 2.97751 3.24226 3.27188 3.34803 3.37610 3.50699 3.76041 4.29116 4.37759 4.39875 4.50218 4.69352 4.95874 5.01955 5.13133 5.25209 5.37509 5.40364 5.51190 5.54029 5.73470 5.75808 5.82072 5.89764 5.91913 6.04240 6.15604 6.18854 6.28214 6.34153 6.36540 6.39574 6.55135 6.57220 6.72429 6.91178 7.00758 7.12745 7.27010 7.57222 7.65400 7.69677 7.88580 8.01392 8.21777 8.37054 8.91892 9.53999 11.00670 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.003408 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.637509 B = 8215.119893 C = 8943.422079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.092 3.908 3 C 0.499 3.501 4 O -0.536 6.536 5 N -0.576 5.576 6 C 0.107 3.893 7 C -0.121 4.121 8 C 0.049 3.951 9 C -0.514 4.514 10 H 0.055 0.945 11 C 0.062 3.938 12 N -0.890 5.890 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.126 4.126 18 C 0.099 3.901 19 O -0.285 6.285 20 C 0.074 3.926 21 C -0.099 4.099 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.127 4.127 25 C 0.098 3.902 26 N -0.657 5.657 27 C 0.525 3.475 28 O -0.490 6.490 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -18.772 -3.193 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 C 0.283 3.717 4 O -0.414 6.414 5 N -0.308 5.308 6 C -0.014 4.014 7 C -0.160 4.160 8 C 0.031 3.969 9 C -0.552 4.552 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.164 4.164 18 C -0.023 4.023 19 O -0.199 6.199 20 C 0.027 3.973 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.148 4.148 25 C 0.002 3.998 26 N -0.303 5.303 27 C 0.310 3.690 28 O -0.362 6.362 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.600 -18.269 -4.034 19.839 hybrid contribution -0.264 0.625 -0.115 0.688 sum 6.336 -17.643 -4.150 19.200 Atomic orbital electron populations 1.21935 0.86641 1.05083 1.05623 1.22364 0.99366 0.90535 0.83058 1.20238 0.79984 0.86873 0.84614 1.90739 1.48260 1.71063 1.31342 1.48165 1.55863 1.17485 1.09254 1.22107 0.97026 0.80640 1.01657 1.22097 0.96408 0.99810 0.97665 1.18637 0.95622 0.89821 0.92869 1.21179 0.97298 0.94983 1.41712 0.92654 1.24961 0.95177 0.98316 0.95465 1.69838 1.16910 1.17844 1.48327 0.86617 0.81677 0.80575 0.79267 1.20714 1.21265 1.19966 1.22063 0.97185 0.97395 0.99759 1.22228 0.97148 0.97465 0.85477 1.86347 1.22310 1.72916 1.38362 1.18610 0.84176 1.01445 0.93033 1.20599 0.93736 1.01064 0.96406 1.21017 0.93788 0.99540 0.98769 1.20970 1.00076 1.00133 0.91639 1.20617 0.91287 1.03303 0.99592 1.18088 0.93347 1.03320 0.85043 1.43582 1.18896 1.57037 1.10795 1.20480 0.80799 0.78103 0.89657 1.90768 1.55020 1.57365 1.33073 0.88400 0.89867 0.88881 0.91839 0.90599 0.94160 0.87705 0.95403 0.92935 0.92807 0.91763 0.89347 0.91664 0.84003 0.84728 0.85069 0.85018 0.74395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.11 37.16 0.30 -1.48 16 2 C 0.09 1.39 0.67 -92.88 -0.06 1.33 16 3 C 0.50 9.11 6.28 -10.98 -0.07 9.04 16 4 O -0.54 -11.53 15.58 5.55 0.09 -11.44 16 5 N -0.58 -10.33 2.97 -172.50 -0.51 -10.85 16 6 C 0.11 2.11 6.47 -3.48 -0.02 2.09 16 7 C -0.12 -2.75 5.17 -26.39 -0.14 -2.89 16 8 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 9 C -0.51 -13.35 8.56 -34.44 -0.29 -13.64 16 10 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 12 N -0.89 -24.34 11.31 55.43 0.63 -23.72 16 13 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.13 -2.34 5.30 -26.61 -0.14 -2.48 16 18 C 0.10 1.57 5.08 -3.71 -0.02 1.55 16 19 O -0.28 -3.84 6.93 -19.51 -0.14 -3.98 16 20 C 0.07 0.93 6.11 -39.10 -0.24 0.69 16 21 C -0.10 -1.04 9.99 -39.48 -0.39 -1.43 16 22 C -0.11 -0.95 10.04 -39.54 -0.40 -1.35 16 23 C -0.11 -0.88 10.04 -39.56 -0.40 -1.28 16 24 C -0.13 -1.18 9.94 -39.45 -0.39 -1.57 16 25 C 0.10 1.18 6.57 -83.53 -0.55 0.63 16 26 N -0.66 -8.35 5.46 -9.70 -0.05 -8.40 16 27 C 0.52 8.21 6.23 -10.86 -0.07 8.14 16 28 O -0.49 -8.66 16.98 5.54 0.09 -8.57 16 29 H 0.10 1.36 7.86 -51.93 -0.41 0.95 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.15 6.29 -51.93 -0.33 0.82 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.55 7.00 -51.93 -0.36 1.18 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 2.66 6.03 -51.93 -0.31 2.34 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.23 3.62 -51.93 -0.19 1.05 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.42 4.22 8.87 -40.82 -0.36 3.85 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -31.81 366.94 -8.70 -40.51 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.15 Total: 5.44 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.16 Total: -0.16 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.06 Total: -42.96 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.05 Total: -23.99 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.81 -8.70 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.407 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds