Wall clock time and date at job start Wed Apr 1 2020 03:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47308 * 2 1 4 4 N 1.46498 * 109.47047 * 120.00226 * 2 1 3 5 5 C 1.46496 * 120.00141 * 87.03098 * 4 2 1 6 6 C 1.50693 * 109.47311 * 89.99946 * 5 4 2 7 7 H 1.07998 * 120.00425 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00229 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00480 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00007 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47371 * 89.99476 * 10 8 6 12 12 H 1.48503 * 109.47309 * 209.99898 * 10 8 6 13 13 H 1.48503 * 109.46972 * 329.99782 * 10 8 6 14 14 C 1.34780 * 120.00019 * 267.02714 * 4 2 1 15 15 O 1.21545 * 120.00349 * 221.63718 * 14 4 2 16 16 C 1.47864 * 119.99749 * 41.63673 * 14 4 2 17 17 C 1.39610 * 120.11163 * 337.04962 * 16 14 4 18 18 C 1.37985 * 119.98215 * 179.74637 * 17 16 14 19 19 C 1.38260 * 120.21369 * 0.52742 * 18 17 16 20 20 C 1.38903 * 120.23348 * 359.74732 * 19 18 17 21 21 N 1.40228 * 119.99801 * 179.97438 * 20 19 18 22 22 C 1.33878 * 122.76333 * 123.10947 * 21 20 19 23 23 O 1.21229 * 125.39399 * 359.97438 * 22 21 20 24 24 C 1.51312 * 109.20375 * 179.84318 * 22 21 20 25 25 C 1.54232 * 103.55491 * 0.38549 * 24 22 21 26 26 C 1.33874 * 122.75731 * 303.40090 * 21 20 19 27 27 O 1.21230 * 125.40318 * 0.02562 * 26 21 20 28 28 C 1.38594 * 120.00551 * 359.97438 * 20 19 18 29 29 H 1.09005 * 109.46842 * 301.42950 * 1 2 3 30 30 H 1.09001 * 109.47117 * 61.42338 * 1 2 3 31 31 H 1.08996 * 109.47474 * 181.43194 * 1 2 3 32 32 H 1.08997 * 109.46735 * 239.99887 * 2 1 3 33 33 H 1.08994 * 109.46771 * 223.08164 * 3 2 1 34 34 H 1.08999 * 109.46687 * 343.08032 * 3 2 1 35 35 H 1.09002 * 109.46985 * 103.07800 * 3 2 1 36 36 H 1.08996 * 109.47400 * 329.99406 * 5 4 2 37 37 H 1.09002 * 109.47228 * 209.99891 * 5 4 2 38 38 H 0.96995 * 120.00246 * 179.97438 * 9 8 6 39 39 H 1.08002 * 120.01306 * 0.02562 * 17 16 14 40 40 H 1.08002 * 119.88670 * 180.25440 * 18 17 16 41 41 H 1.08006 * 119.88297 * 179.72436 * 19 18 17 42 42 H 1.09003 * 110.79334 * 241.77998 * 24 22 21 43 43 H 1.09001 * 110.54794 * 118.87388 * 24 22 21 44 44 H 1.09004 * 110.60400 * 241.25984 * 25 24 22 45 45 H 1.09003 * 110.73643 * 118.36443 * 25 24 22 46 46 H 1.08006 * 120.10194 * 179.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.2005 -2.1441 1.1797 6 6 3.6007 -2.4698 0.7276 7 1 4.2863 -1.6738 0.4772 8 6 4.0067 -3.7841 0.6337 9 7 5.2285 -4.0684 0.2388 10 14 2.8209 -5.1611 1.0662 11 1 2.0686 -5.5663 -0.1484 12 1 3.5822 -6.3245 1.5879 13 1 1.8689 -4.6873 2.1028 14 6 2.3000 0.0112 2.3118 15 8 3.2934 -0.2521 2.9608 16 6 1.4006 1.1015 2.7461 17 6 0.5643 1.7298 1.8214 18 6 -0.2777 2.7434 2.2307 19 6 -0.2889 3.1475 3.5528 20 6 0.5435 2.5324 4.4792 21 7 0.5285 2.9465 5.8189 22 6 0.2750 2.1100 6.8330 23 8 0.0338 0.9270 6.7238 24 6 0.3406 2.8746 8.1371 25 6 0.6696 4.3152 7.6954 26 6 0.7609 4.2120 6.1885 27 8 1.0054 5.1300 5.4354 28 6 1.3889 1.5094 4.0796 29 1 -0.3633 0.5359 0.8769 30 1 -0.3633 0.4916 -0.9025 31 1 -0.3634 -1.0273 0.0257 32 1 1.8933 -0.5138 -0.8900 33 1 2.8688 1.5348 -0.7019 34 1 1.2342 2.1127 -0.2991 35 1 2.3804 1.7075 1.0010 36 1 1.4833 -2.5925 0.4923 37 1 2.0406 -2.5418 2.1819 38 1 5.5142 -4.9930 0.1731 39 1 0.5732 1.4196 0.7869 40 1 -0.9270 3.2257 1.5148 41 1 -0.9470 3.9445 3.8664 42 1 1.1294 2.4801 8.7777 43 1 -0.6210 2.8406 8.6493 44 1 1.6221 4.6374 8.1163 45 1 -0.1277 4.9995 7.9855 46 1 2.0371 1.0304 4.7985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608813950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:19 Heat of formation + Delta-G solvation = 2.859455 kcal Electronic energy + Delta-G solvation = -30800.248719 eV Core-core repulsion = 26658.430230 eV Total energy + Delta-G solvation = -4141.818490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.33817 -42.23386 -39.77482 -39.33284 -38.24217 -37.03180 -35.48357 -34.40620 -33.33663 -32.41151 -30.41782 -29.75548 -28.24148 -27.21284 -25.56643 -24.73005 -23.95301 -23.37855 -22.70917 -21.49027 -19.65292 -19.17686 -18.83519 -18.29310 -18.12876 -17.51631 -17.35753 -17.22517 -16.60870 -16.18025 -16.10514 -15.57484 -15.44240 -15.21487 -15.02325 -14.98956 -14.73704 -14.62381 -14.55252 -14.47954 -13.93094 -13.62070 -13.53229 -13.44335 -13.08871 -12.92237 -12.81549 -12.56407 -12.45145 -12.17029 -12.13559 -12.02094 -11.81625 -11.77710 -11.50407 -11.21141 -10.96666 -10.87244 -10.80713 -10.17025 -9.67718 -9.29384 -8.34439 -6.39462 -0.34117 0.03864 0.39228 1.28493 1.32177 1.34719 1.43574 1.47727 1.64858 2.15056 2.28964 2.57484 2.97936 3.16881 3.23944 3.41387 3.57672 3.68731 3.74600 3.82665 3.94190 4.00049 4.02159 4.14203 4.24816 4.36098 4.55480 4.62168 4.65512 4.72134 4.73291 4.77335 4.80403 4.86991 4.87159 4.93561 5.00816 5.05720 5.12928 5.19818 5.26411 5.39516 5.43713 5.66775 5.70789 5.74935 6.21681 6.24600 6.60421 6.63435 6.65824 7.03309 7.24553 8.83441 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014705 B = 0.003238 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.713289 B = 8644.958171 C = 9650.065542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.125 3.875 3 C -0.184 4.184 4 N -0.626 5.626 5 C 0.235 3.765 6 C -0.533 4.533 7 H 0.022 0.978 8 C 0.006 3.994 9 N -0.948 5.948 10 Si 0.950 3.050 11 H -0.246 1.246 12 H -0.282 1.282 13 H -0.256 1.256 14 C 0.564 3.436 15 O -0.566 6.566 16 C -0.144 4.144 17 C -0.130 4.130 18 C -0.110 4.110 19 C -0.077 4.077 20 C 0.077 3.923 21 N -0.535 5.535 22 C 0.510 3.490 23 O -0.520 6.520 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.517 3.483 27 O -0.510 6.510 28 C -0.074 4.074 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.232 0.768 40 H 0.188 0.812 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.148 0.852 45 H 0.161 0.839 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.655 21.391 11.334 31.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.022 3.978 3 C -0.241 4.241 4 N -0.359 5.359 5 C 0.113 3.887 6 C -0.571 4.571 7 H 0.040 0.960 8 C -0.191 4.191 9 N -0.589 5.589 10 Si 0.772 3.228 11 H -0.169 1.169 12 H -0.207 1.207 13 H -0.180 1.180 14 C 0.354 3.646 15 O -0.444 6.444 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.128 4.128 19 C -0.097 4.097 20 C -0.012 4.012 21 N -0.275 5.275 22 C 0.302 3.698 23 O -0.393 6.393 24 C -0.175 4.175 25 C -0.173 4.173 26 C 0.310 3.690 27 O -0.382 6.382 28 C -0.094 4.094 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.205 0.795 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.174 0.826 44 H 0.166 0.834 45 H 0.178 0.822 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.994 20.966 11.189 31.056 hybrid contribution 1.049 -1.499 0.086 1.832 sum -18.945 19.467 11.275 29.411 Atomic orbital electron populations 1.23209 0.92881 1.04495 1.05675 1.21448 0.95791 0.93307 0.87223 1.23032 1.03275 0.95249 1.02508 1.47630 1.68578 1.07736 1.11997 1.19315 0.95331 0.77759 0.96257 1.21605 0.98204 0.92573 1.44757 0.95988 1.25950 0.97221 1.01647 0.94309 1.70075 1.19746 1.20054 1.48984 0.85683 0.79024 0.77910 0.80159 1.16935 1.20725 1.18047 1.18748 0.83507 0.81565 0.80752 1.90711 1.27035 1.68052 1.58610 1.20027 1.00816 0.99250 0.94716 1.24618 0.91031 0.93839 1.05127 1.21568 0.99153 0.96571 0.95534 1.21557 0.95831 0.98719 0.93564 1.17677 0.99774 0.98964 0.84820 1.44801 1.63091 1.13368 1.06216 1.22221 0.72852 0.86172 0.88542 1.90815 1.45529 1.16129 1.86817 1.22634 1.09571 0.92851 0.92418 1.22637 1.09592 0.98679 0.86350 1.22035 0.72790 0.79655 0.94511 1.90775 1.45067 1.41041 1.61347 1.20951 0.96680 0.96341 0.95441 0.88360 0.86757 0.92099 0.89618 0.92250 0.85480 0.93006 0.92325 0.97361 0.92319 0.75341 0.79514 0.83087 0.83720 0.82570 0.83439 0.82185 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.40 8.59 71.98 0.62 -3.78 16 2 C 0.12 3.94 3.13 44.99 0.14 4.08 16 3 C -0.18 -4.92 7.92 71.98 0.57 -4.35 16 4 N -0.63 -27.69 2.42 -805.53 -1.95 -29.64 16 5 C 0.24 12.07 4.25 85.63 0.36 12.43 16 6 C -0.53 -33.25 9.80 25.60 0.25 -33.00 16 7 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 8 C 0.01 0.37 5.47 84.65 0.46 0.84 16 9 N -0.95 -62.52 13.96 21.45 0.30 -62.22 16 10 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 11 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 14 C 0.56 26.51 5.64 86.79 0.49 27.00 16 15 O -0.57 -32.93 16.91 -3.86 -0.07 -32.99 16 16 C -0.14 -5.25 5.11 -20.10 -0.10 -5.35 16 17 C -0.13 -3.27 4.51 22.54 0.10 -3.17 16 18 C -0.11 -2.05 10.02 22.21 0.22 -1.83 16 19 C -0.08 -1.70 9.28 22.43 0.21 -1.49 16 20 C 0.08 2.20 5.30 38.04 0.20 2.40 16 21 N -0.54 -12.24 2.67 -579.82 -1.55 -13.78 16 22 C 0.51 10.81 7.88 87.99 0.69 11.50 16 23 O -0.52 -16.46 17.27 -2.87 -0.05 -16.51 16 24 C -0.14 -0.80 7.03 30.46 0.21 -0.59 16 25 C -0.13 -0.57 7.03 30.46 0.21 -0.36 16 26 C 0.52 9.23 7.88 87.99 0.69 9.92 16 27 O -0.51 -12.64 17.26 -2.87 -0.05 -12.69 16 28 C -0.07 -2.69 8.84 22.65 0.20 -2.49 16 29 H 0.10 2.00 4.12 -4.14 -0.02 1.99 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.90 8.09 -2.39 -0.02 2.88 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 2.00 6.55 -2.39 -0.02 1.99 16 35 H 0.05 1.69 4.07 -2.39 -0.01 1.68 16 36 H 0.06 2.66 7.50 -2.39 -0.02 2.64 16 37 H 0.01 0.46 7.09 -2.39 -0.02 0.44 16 38 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 39 H 0.23 4.89 0.64 -47.50 -0.03 4.86 16 40 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.16 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.16 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.10 4.19 7.82 -2.91 -0.02 4.17 16 Total: -1.00 -100.98 371.76 5.01 -95.97 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.94 Total: 12.45 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.54 Total: 11.78 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.19 Total: -105.64 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -0.16 Total: -62.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -100.98 5.01 -95.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608813950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.833 kcal (2) G-P(sol) polarization free energy of solvation -100.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds