Wall clock time and date at job start Wed Apr 1 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46494 * 109.47154 * 185.03369 * 3 2 1 5 5 C 1.46500 * 120.00534 * 259.13994 * 4 3 2 6 6 C 1.50693 * 109.47484 * 270.00564 * 5 4 3 7 7 O 1.20830 * 119.99988 * 359.97438 * 6 5 4 8 8 O 1.34223 * 120.00363 * 179.97438 * 6 5 4 9 9 C 1.45195 * 117.00576 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99691 * 79.14392 * 4 3 2 11 11 O 1.21662 * 119.99815 * 179.77645 * 10 4 3 12 12 C 1.46893 * 119.99995 * 359.77759 * 10 4 3 13 13 C 1.36118 * 125.43349 * 352.28812 * 12 10 4 14 14 C 1.41709 * 107.74366 * 180.24360 * 13 12 10 15 15 C 1.40017 * 133.34922 * 179.82166 * 14 13 12 16 16 C 1.36577 * 119.83123 * 179.97438 * 15 14 13 17 17 C 1.38851 * 120.60134 * 359.97438 * 16 15 14 18 18 C 1.37849 * 120.63177 * 359.97438 * 17 16 15 19 19 C 1.39093 * 119.81149 * 0.02562 * 18 17 16 20 20 N 1.37838 * 133.15825 * 180.02562 * 19 18 17 21 21 C 1.36889 * 125.62292 * 359.93603 * 20 19 18 22 22 H 1.07994 * 119.99927 * 138.94304 * 21 20 19 23 23 C 1.39011 * 119.99781 * 318.93571 * 21 20 19 24 24 N 1.31347 * 120.00527 * 344.62468 * 23 21 20 25 25 Si 1.86804 * 119.99664 * 164.34629 * 23 21 20 26 26 H 1.48497 * 109.47337 * 185.27587 * 25 23 21 27 27 H 1.48506 * 109.46773 * 305.27259 * 25 23 21 28 28 H 1.48498 * 109.47195 * 65.27124 * 25 23 21 29 29 H 1.09000 * 109.46860 * 305.00601 * 1 2 3 30 30 H 1.09000 * 109.47196 * 65.00989 * 1 2 3 31 31 H 1.09004 * 109.47091 * 185.00649 * 1 2 3 32 32 H 1.08999 * 109.46987 * 240.00238 * 2 1 3 33 33 H 1.08996 * 109.46928 * 120.00088 * 2 1 3 34 34 H 1.09002 * 109.47039 * 65.03724 * 3 2 1 35 35 H 1.08998 * 109.47477 * 305.04199 * 3 2 1 36 36 H 1.08999 * 109.46861 * 30.00347 * 5 4 3 37 37 H 1.09000 * 109.47000 * 149.99660 * 5 4 3 38 38 H 1.08995 * 109.47693 * 59.99625 * 9 8 6 39 39 H 1.09002 * 109.47846 * 180.02562 * 9 8 6 40 40 H 1.09001 * 109.46877 * 299.99674 * 9 8 6 41 41 H 1.07993 * 126.13024 * 0.02562 * 13 12 10 42 42 H 1.08009 * 120.08309 * 359.93422 * 15 14 13 43 43 H 1.08005 * 119.69974 * 180.02562 * 16 15 14 44 44 H 1.07995 * 119.68684 * 179.97438 * 17 16 15 45 45 H 1.07997 * 120.09305 * 179.97438 * 18 17 16 46 46 H 0.97005 * 119.99481 * 351.27013 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4443 -0.1212 5 6 4.3334 1.6477 1.0663 6 6 4.5987 3.1199 1.2478 7 8 4.1391 3.9176 0.4652 8 8 5.3454 3.5453 2.2788 9 6 5.5600 4.9769 2.3910 10 6 4.0764 1.2589 -1.3253 11 8 5.2888 1.2644 -1.4266 12 6 3.2408 1.0502 -2.5153 13 6 1.8909 0.8756 -2.5109 14 6 1.4735 0.7023 -3.8540 15 6 0.2266 0.4844 -4.4525 16 6 0.1376 0.3540 -5.8091 17 6 1.2737 0.4361 -6.6031 18 6 2.5121 0.6512 -6.0372 19 6 2.6278 0.7871 -4.6577 20 7 3.6993 1.0041 -3.8183 21 6 5.0035 1.1437 -4.2100 22 1 5.6300 1.8905 -3.7450 23 6 5.5215 0.3242 -5.2062 24 7 4.8799 -0.7661 -5.5595 25 14 7.1263 0.7776 -6.0480 26 1 7.3947 -0.1800 -7.1507 27 1 7.0243 2.1524 -6.6002 28 1 8.2356 0.7211 -5.0623 29 1 -0.3633 0.5895 0.8418 30 1 -0.3633 0.4341 -0.9315 31 1 -0.3633 -1.0238 0.0897 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7522 1.9296 0.9317 35 1 1.6049 1.9818 -0.8413 36 1 3.8157 1.2609 1.9441 37 1 5.2793 1.1207 0.9409 38 1 4.5996 5.4811 2.4975 39 1 6.1785 5.1844 3.2644 40 1 6.0637 5.3401 1.4952 41 1 1.2528 0.8668 -1.6397 42 1 -0.6626 0.4189 -3.8428 43 1 -0.8254 0.1864 -6.2685 44 1 1.1863 0.3305 -7.6743 45 1 3.3901 0.7131 -6.6630 46 1 4.1157 -1.0677 -5.0437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609166188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:29 Heat of formation + Delta-G solvation = -23.959485 kcal Electronic energy + Delta-G solvation = -31336.478210 eV Core-core repulsion = 27193.496764 eV Total energy + Delta-G solvation = -4142.981446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03487 -40.37172 -38.89736 -36.60197 -36.26631 -35.93478 -33.79158 -33.04685 -30.47799 -29.78317 -29.03475 -28.05669 -26.84083 -25.88489 -24.59158 -22.95865 -21.68882 -21.35639 -20.66160 -20.33461 -19.09616 -18.03299 -17.73661 -16.79258 -16.65339 -16.18697 -16.02019 -15.69795 -14.96429 -14.74141 -14.70019 -14.10671 -14.00701 -13.79717 -13.55079 -13.31842 -13.11474 -13.03879 -12.87468 -12.42926 -12.29112 -12.16968 -12.14266 -11.94760 -11.68097 -11.34202 -11.15505 -11.00429 -10.84828 -10.82837 -10.71893 -10.56854 -10.46094 -10.32127 -10.10193 -9.78191 -9.29680 -9.04152 -8.73271 -8.59098 -7.45405 -6.95950 -6.64327 -4.42924 1.70203 2.23452 2.44417 2.65896 3.00178 3.18276 3.22015 3.25254 3.41478 4.00478 4.16355 4.47753 4.76708 4.78017 4.87695 4.95066 4.96927 5.00395 5.08593 5.11813 5.23593 5.34863 5.40681 5.43129 5.53542 5.72251 5.75200 5.86024 5.87331 5.97013 6.03989 6.14626 6.30977 6.35584 6.40589 6.44345 6.57760 6.62298 6.79301 6.91581 7.00964 7.35412 7.45106 7.51980 7.56181 7.76648 7.81672 7.88328 7.95190 8.27535 8.68663 8.88656 9.17833 10.25947 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.004762 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.237221 B = 5878.248063 C = 8049.064018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.160 4.160 3 C 0.098 3.902 4 N -0.598 5.598 5 C 0.132 3.868 6 C 0.439 3.561 7 O -0.492 6.492 8 O -0.363 6.363 9 C 0.037 3.963 10 C 0.594 3.406 11 O -0.523 6.523 12 C -0.023 4.023 13 C -0.238 4.238 14 C -0.123 4.123 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.070 4.070 19 C 0.053 3.947 20 N -0.238 5.238 21 C -0.401 4.401 22 H 0.107 0.893 23 C 0.021 3.979 24 N -0.836 5.836 25 Si 1.082 2.918 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.276 1.276 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.170 0.830 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 3.503 12.910 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C -0.025 4.025 4 N -0.333 5.333 5 C 0.006 3.994 6 C 0.280 3.720 7 O -0.377 6.377 8 O -0.280 6.280 9 C -0.057 4.057 10 C 0.386 3.614 11 O -0.398 6.398 12 C -0.140 4.140 13 C -0.264 4.264 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.174 4.174 17 C -0.165 4.165 18 C -0.089 4.089 19 C -0.061 4.061 20 N 0.101 4.899 21 C -0.530 4.530 22 H 0.124 0.876 23 C -0.192 4.192 24 N -0.464 5.464 25 Si 0.905 3.095 26 H -0.197 1.197 27 H -0.203 1.203 28 H -0.202 1.202 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.187 0.813 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.138 0.862 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.627 3.362 11.289 12.325 hybrid contribution -1.008 0.659 1.335 1.798 sum -4.635 4.021 12.625 14.037 Atomic orbital electron populations 1.21758 0.94951 1.02118 1.02111 1.22313 0.96417 0.97137 1.03925 1.22296 0.79075 0.97353 1.03745 1.47303 1.06635 1.73198 1.06138 1.20780 0.99818 0.88607 0.90177 1.24690 0.75368 0.93662 0.78322 1.90701 1.47824 1.56526 1.42653 1.86485 1.65935 1.27461 1.48114 1.23218 1.01941 0.77612 1.02974 1.17293 0.86883 0.75453 0.81807 1.90789 1.14073 1.49945 1.85014 1.19505 0.93061 1.16159 0.85263 1.21954 0.93497 1.13942 0.97010 1.18017 0.92788 1.08566 0.93362 1.20049 0.94935 1.01552 0.94187 1.20322 0.97459 1.05940 0.93711 1.20570 0.92172 1.05221 0.98522 1.20300 0.97475 0.99357 0.91818 1.18409 0.86375 1.09215 0.92081 1.40077 1.05525 1.42534 1.01777 1.20878 0.85679 1.21736 1.24696 0.87570 1.26881 1.04553 0.92526 0.95221 1.70597 1.19646 1.18751 1.37410 0.83334 0.73038 0.76548 0.76572 1.19693 1.20289 1.20188 0.92780 0.91778 0.92247 0.89011 0.91869 0.90914 0.87773 0.86292 0.85611 0.92082 0.88235 0.91937 0.81322 0.87708 0.87742 0.87360 0.86184 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.16 -1.98 5.15 -26.73 -0.14 -2.12 16 3 C 0.10 1.34 5.00 -4.05 -0.02 1.32 16 4 N -0.60 -10.07 2.00 -176.54 -0.35 -10.42 16 5 C 0.13 1.78 5.95 -5.20 -0.03 1.75 16 6 C 0.44 6.67 8.02 36.00 0.29 6.96 16 7 O -0.49 -9.28 16.18 -18.75 -0.30 -9.58 16 8 O -0.36 -4.64 10.56 -39.24 -0.41 -5.06 16 9 C 0.04 0.37 10.56 101.05 1.07 1.43 16 10 C 0.59 13.33 7.50 -12.76 -0.10 13.24 16 11 O -0.52 -13.39 14.74 5.22 0.08 -13.31 16 12 C -0.02 -0.56 6.51 -82.25 -0.54 -1.09 16 13 C -0.24 -4.96 7.02 -39.02 -0.27 -5.24 16 14 C -0.12 -2.76 6.16 -106.89 -0.66 -3.42 16 15 C -0.09 -1.71 10.06 -39.51 -0.40 -2.11 16 16 C -0.16 -2.92 9.97 -39.95 -0.40 -3.32 16 17 C -0.14 -2.96 10.02 -39.50 -0.40 -3.36 16 18 C -0.07 -1.68 8.40 -39.41 -0.33 -2.01 16 19 C 0.05 1.36 5.38 -83.84 -0.45 0.90 16 20 N -0.24 -6.42 2.61 -56.08 -0.15 -6.57 16 21 C -0.40 -11.26 8.63 -15.01 -0.13 -11.39 16 22 H 0.11 3.10 7.20 -52.49 -0.38 2.72 16 23 C 0.02 0.57 4.51 -17.47 -0.08 0.49 16 24 N -0.84 -23.29 11.73 55.50 0.65 -22.64 16 25 Si 1.08 23.50 29.95 -169.99 -5.09 18.41 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.70 7.00 -51.93 -0.36 0.34 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.45 5.73 -51.93 -0.30 1.15 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.79 7.99 -51.93 -0.42 0.38 16 35 H 0.10 1.63 5.20 -51.93 -0.27 1.36 16 36 H 0.12 1.06 8.07 -51.93 -0.42 0.64 16 37 H 0.13 1.75 7.42 -51.93 -0.39 1.36 16 38 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 41 H 0.17 2.82 1.35 -52.49 -0.07 2.75 16 42 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.12 3.04 6.60 -52.49 -0.35 2.69 16 46 H 0.29 8.37 6.71 -40.82 -0.27 8.10 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -34.36 373.89 -7.99 -42.34 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.82 Total: 10.35 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.22 Total: -9.15 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.15 Total: -39.64 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.64 Total: -27.95 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.09 Total: 18.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.36 -7.99 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609166188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.384 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds