Wall clock time and date at job start Wed Apr 1 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46494 * 109.47154 * 185.03369 * 3 2 1 5 5 C 1.46500 * 120.00534 * 259.13994 * 4 3 2 6 6 C 1.50693 * 109.47484 * 270.00564 * 5 4 3 7 7 O 1.20830 * 119.99988 * 359.97438 * 6 5 4 8 8 O 1.34223 * 120.00363 * 179.97438 * 6 5 4 9 9 C 1.45195 * 117.00576 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99691 * 79.14392 * 4 3 2 11 11 O 1.21662 * 119.99815 * 179.77645 * 10 4 3 12 12 C 1.46893 * 119.99995 * 359.77759 * 10 4 3 13 13 C 1.36118 * 125.43349 * 352.28812 * 12 10 4 14 14 C 1.41709 * 107.74366 * 180.24360 * 13 12 10 15 15 C 1.40017 * 133.34922 * 179.82166 * 14 13 12 16 16 C 1.36577 * 119.83123 * 179.97438 * 15 14 13 17 17 C 1.38851 * 120.60134 * 359.97438 * 16 15 14 18 18 C 1.37849 * 120.63177 * 359.97438 * 17 16 15 19 19 C 1.39093 * 119.81149 * 0.02562 * 18 17 16 20 20 N 1.37838 * 133.15825 * 180.02562 * 19 18 17 21 21 C 1.36889 * 125.62292 * 359.93603 * 20 19 18 22 22 H 1.07994 * 119.99927 * 138.94304 * 21 20 19 23 23 C 1.39011 * 119.99781 * 318.93571 * 21 20 19 24 24 N 1.31347 * 120.00527 * 344.62468 * 23 21 20 25 25 Si 1.86804 * 119.99664 * 164.34629 * 23 21 20 26 26 H 1.48497 * 109.47337 * 185.27587 * 25 23 21 27 27 H 1.48506 * 109.46773 * 305.27259 * 25 23 21 28 28 H 1.48498 * 109.47195 * 65.27124 * 25 23 21 29 29 H 1.09000 * 109.46860 * 305.00601 * 1 2 3 30 30 H 1.09000 * 109.47196 * 65.00989 * 1 2 3 31 31 H 1.09004 * 109.47091 * 185.00649 * 1 2 3 32 32 H 1.08999 * 109.46987 * 240.00238 * 2 1 3 33 33 H 1.08996 * 109.46928 * 120.00088 * 2 1 3 34 34 H 1.09002 * 109.47039 * 65.03724 * 3 2 1 35 35 H 1.08998 * 109.47477 * 305.04199 * 3 2 1 36 36 H 1.08999 * 109.46861 * 30.00347 * 5 4 3 37 37 H 1.09000 * 109.47000 * 149.99660 * 5 4 3 38 38 H 1.08995 * 109.47693 * 59.99625 * 9 8 6 39 39 H 1.09002 * 109.47846 * 180.02562 * 9 8 6 40 40 H 1.09001 * 109.46877 * 299.99674 * 9 8 6 41 41 H 1.07993 * 126.13024 * 0.02562 * 13 12 10 42 42 H 1.08009 * 120.08309 * 359.93422 * 15 14 13 43 43 H 1.08005 * 119.69974 * 180.02562 * 16 15 14 44 44 H 1.07995 * 119.68684 * 179.97438 * 17 16 15 45 45 H 1.07997 * 120.09305 * 179.97438 * 18 17 16 46 46 H 0.97005 * 119.99481 * 351.27013 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4443 -0.1212 5 6 4.3334 1.6477 1.0663 6 6 4.5987 3.1199 1.2478 7 8 4.1391 3.9176 0.4652 8 8 5.3454 3.5453 2.2788 9 6 5.5600 4.9769 2.3910 10 6 4.0764 1.2589 -1.3253 11 8 5.2888 1.2644 -1.4266 12 6 3.2408 1.0502 -2.5153 13 6 1.8909 0.8756 -2.5109 14 6 1.4735 0.7023 -3.8540 15 6 0.2266 0.4844 -4.4525 16 6 0.1376 0.3540 -5.8091 17 6 1.2737 0.4361 -6.6031 18 6 2.5121 0.6512 -6.0372 19 6 2.6278 0.7871 -4.6577 20 7 3.6993 1.0041 -3.8183 21 6 5.0035 1.1437 -4.2100 22 1 5.6300 1.8905 -3.7450 23 6 5.5215 0.3242 -5.2062 24 7 4.8799 -0.7661 -5.5595 25 14 7.1263 0.7776 -6.0480 26 1 7.3947 -0.1800 -7.1507 27 1 7.0243 2.1524 -6.6002 28 1 8.2356 0.7211 -5.0623 29 1 -0.3633 0.5895 0.8418 30 1 -0.3633 0.4341 -0.9315 31 1 -0.3633 -1.0238 0.0897 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7522 1.9296 0.9317 35 1 1.6049 1.9818 -0.8413 36 1 3.8157 1.2609 1.9441 37 1 5.2793 1.1207 0.9409 38 1 4.5996 5.4811 2.4975 39 1 6.1785 5.1844 3.2644 40 1 6.0637 5.3401 1.4952 41 1 1.2528 0.8668 -1.6397 42 1 -0.6626 0.4189 -3.8428 43 1 -0.8254 0.1864 -6.2685 44 1 1.1863 0.3305 -7.6743 45 1 3.3901 0.7131 -6.6630 46 1 4.1157 -1.0677 -5.0437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609166188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:28 Heat of formation + Delta-G solvation = -44.372424 kcal Electronic energy + Delta-G solvation = -31337.363381 eV Core-core repulsion = 27193.496764 eV Total energy + Delta-G solvation = -4143.866618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.67148 -41.67261 -40.40731 -38.03854 -37.61924 -37.48826 -35.58747 -34.30369 -32.22221 -31.10764 -30.75249 -29.43266 -27.92187 -27.10425 -26.51632 -24.48144 -22.93596 -22.63951 -22.19191 -22.00670 -20.65658 -19.76478 -18.90293 -18.09164 -18.02887 -17.65946 -17.44847 -17.22687 -16.49763 -16.40835 -16.20287 -15.66850 -15.51836 -15.37413 -14.77290 -14.65945 -14.60644 -14.42783 -14.28717 -14.02166 -13.80381 -13.37198 -13.26332 -13.07738 -12.91437 -12.80639 -12.55094 -12.40072 -12.28739 -12.17597 -12.05170 -11.93766 -11.88744 -11.79688 -11.67836 -11.44446 -11.01354 -10.94176 -10.47317 -9.98722 -9.38512 -8.79853 -8.44931 -6.49594 0.00574 0.97561 1.03808 1.16650 1.37743 1.41409 1.50142 1.68457 1.92867 2.23536 2.42012 2.76181 2.94716 3.21712 3.55745 3.70866 3.89917 4.02615 4.08585 4.16006 4.24495 4.25490 4.29545 4.33236 4.40015 4.43724 4.50947 4.63119 4.63515 4.66982 4.76124 4.88766 4.98082 5.03057 5.10795 5.20895 5.24925 5.29168 5.31415 5.43671 5.50544 5.54538 5.74508 5.77547 5.84474 5.98501 6.12416 6.25984 6.48020 6.60894 6.89306 7.08780 7.27570 8.18004 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.004762 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.237221 B = 5878.248063 C = 8049.064018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.090 3.910 4 N -0.586 5.586 5 C 0.126 3.874 6 C 0.443 3.557 7 O -0.537 6.537 8 O -0.357 6.357 9 C 0.029 3.971 10 C 0.585 3.415 11 O -0.572 6.572 12 C -0.058 4.058 13 C -0.201 4.201 14 C -0.149 4.149 15 C -0.075 4.075 16 C -0.155 4.155 17 C -0.123 4.123 18 C -0.118 4.118 19 C 0.035 3.965 20 N -0.281 5.281 21 C -0.428 4.428 22 H 0.075 0.925 23 C -0.014 4.014 24 N -0.856 5.856 25 Si 1.125 2.875 26 H -0.262 1.262 27 H -0.266 1.266 28 H -0.271 1.271 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.180 0.820 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.139 0.861 40 H 0.046 0.954 41 H 0.214 0.786 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 3.352 15.220 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C -0.030 4.030 4 N -0.318 5.318 5 C 0.002 3.998 6 C 0.285 3.715 7 O -0.426 6.426 8 O -0.273 6.273 9 C -0.064 4.064 10 C 0.376 3.624 11 O -0.452 6.452 12 C -0.173 4.173 13 C -0.227 4.227 14 C -0.154 4.154 15 C -0.094 4.094 16 C -0.173 4.173 17 C -0.143 4.143 18 C -0.138 4.138 19 C -0.079 4.079 20 N 0.055 4.945 21 C -0.556 4.556 22 H 0.093 0.907 23 C -0.221 4.221 24 N -0.485 5.485 25 Si 0.942 3.058 26 H -0.185 1.185 27 H -0.190 1.190 28 H -0.196 1.196 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.197 0.803 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.157 0.843 40 H 0.065 0.935 41 H 0.230 0.770 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.154 0.846 45 H 0.110 0.890 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.189 3.220 13.671 15.778 hybrid contribution -0.178 0.778 0.811 1.138 sum -7.367 3.998 14.482 16.733 Atomic orbital electron populations 1.21764 0.92659 1.03354 1.02902 1.22238 0.98251 0.95577 1.03295 1.22534 0.76878 0.98620 1.05008 1.47308 1.08339 1.70987 1.05195 1.21216 1.00115 0.87907 0.90564 1.24923 0.74644 0.93923 0.77974 1.90693 1.49909 1.57757 1.44243 1.86478 1.64892 1.29135 1.46798 1.23533 1.02911 0.76001 1.03948 1.17429 0.86281 0.75383 0.83261 1.90742 1.15889 1.52510 1.86023 1.20224 0.94761 1.16791 0.85480 1.22607 0.92522 1.09554 0.97982 1.18569 0.93477 1.09701 0.93676 1.20582 0.94880 0.98806 0.95122 1.20839 0.98643 1.04405 0.93459 1.21042 0.91348 1.01609 1.00330 1.20321 0.98296 1.03711 0.91512 1.18979 0.87229 1.08626 0.93081 1.40214 1.05385 1.45843 1.03009 1.20634 0.86821 1.22100 1.26075 0.90728 1.28162 1.06639 0.91716 0.95538 1.70708 1.19845 1.19802 1.38162 0.82851 0.69812 0.77048 0.76094 1.18549 1.19043 1.19594 0.90103 0.92491 0.91218 0.92878 0.89421 0.86631 0.89883 0.80336 0.86238 0.91476 0.84319 0.93545 0.77049 0.83122 0.82874 0.84583 0.89022 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.67 71.98 0.70 -1.67 16 2 C -0.16 -3.36 5.15 30.60 0.16 -3.20 16 3 C 0.09 2.25 5.00 86.38 0.43 2.68 16 4 N -0.59 -19.43 2.00 -830.67 -1.66 -21.09 16 5 C 0.13 3.21 5.95 85.63 0.51 3.72 16 6 C 0.44 13.08 8.02 71.23 0.57 13.65 16 7 O -0.54 -20.46 16.18 21.95 0.36 -20.11 16 8 O -0.36 -8.57 10.56 -51.35 -0.54 -9.12 16 9 C 0.03 0.55 10.56 113.37 1.20 1.75 16 10 C 0.58 27.64 7.50 86.51 0.65 28.29 16 11 O -0.57 -31.60 14.74 -4.23 -0.06 -31.66 16 12 C -0.06 -2.95 6.51 39.91 0.26 -2.69 16 13 C -0.20 -8.40 7.02 22.63 0.16 -8.24 16 14 C -0.15 -6.69 6.16 -21.34 -0.13 -6.82 16 15 C -0.08 -2.67 10.06 22.31 0.22 -2.45 16 16 C -0.15 -5.23 9.97 22.03 0.22 -5.01 16 17 C -0.12 -4.91 10.02 22.32 0.22 -4.68 16 18 C -0.12 -5.95 8.40 22.38 0.19 -5.76 16 19 C 0.03 1.85 5.38 39.06 0.21 2.06 16 20 N -0.28 -16.30 2.61 -331.35 -0.86 -17.17 16 21 C -0.43 -26.33 8.63 84.09 0.73 -25.60 16 22 H 0.07 4.86 7.20 -2.91 -0.02 4.84 16 23 C -0.01 -0.80 4.51 84.95 0.38 -0.42 16 24 N -0.86 -51.26 11.73 21.67 0.25 -51.01 16 25 Si 1.12 50.79 29.95 68.60 2.05 52.84 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.99 7.00 -2.39 -0.02 0.98 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.60 5.73 -2.39 -0.01 1.58 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.96 7.99 -2.39 -0.02 1.94 16 35 H 0.08 2.44 5.20 -2.39 -0.01 2.42 16 36 H 0.18 2.36 8.07 -2.39 -0.02 2.34 16 37 H 0.12 3.30 7.42 -2.39 -0.02 3.28 16 38 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 41 H 0.21 6.70 1.35 -2.91 0.00 6.70 16 42 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 45 H 0.09 5.03 6.60 -2.91 -0.02 5.01 16 46 H 0.27 16.80 6.71 -92.70 -0.62 16.17 16 Total: -1.00 -86.77 373.89 7.38 -79.40 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 1.17 Total: 32.32 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 6.67 Total: -14.40 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -2.27 Total: -89.27 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -0.25 Total: -60.88 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Total: -86.77 7.38 -79.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609166188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.024 kcal (2) G-P(sol) polarization free energy of solvation -86.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds