Wall clock time and date at job start Wed Apr 1 2020 02:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47031 * 2 1 4 4 C 1.52997 * 109.47144 * 185.00039 * 3 2 1 5 5 N 1.46501 * 109.46707 * 304.99754 * 3 2 1 6 6 C 1.34778 * 120.00215 * 295.82372 * 5 3 2 7 7 O 1.21668 * 119.99500 * 5.44699 * 6 5 3 8 8 C 1.46886 * 120.00308 * 185.44878 * 6 5 3 9 9 C 1.36126 * 125.43814 * 186.30257 * 8 6 5 10 10 C 1.41697 * 107.75076 * 180.27662 * 9 8 6 11 11 C 1.40017 * 133.35612 * 179.77709 * 10 9 8 12 12 C 1.36575 * 119.83728 * 179.97438 * 11 10 9 13 13 C 1.38861 * 120.59663 * 359.95972 * 12 11 10 14 14 C 1.37849 * 120.63138 * 0.02562 * 13 12 11 15 15 C 1.39079 * 119.81552 * 0.02562 * 14 13 12 16 16 N 1.37842 * 133.16319 * 180.02562 * 15 14 13 17 17 C 1.36892 * 125.61812 * 359.97438 * 16 15 14 18 18 H 1.07995 * 119.99526 * 224.41526 * 17 16 15 19 19 C 1.39008 * 120.00217 * 44.41407 * 17 16 15 20 20 N 1.31350 * 119.99846 * 17.87849 * 19 17 16 21 21 Si 1.86797 * 120.00148 * 197.87652 * 19 17 16 22 22 H 1.48495 * 109.47017 * 184.85406 * 21 19 17 23 23 H 1.48499 * 109.47244 * 304.85475 * 21 19 17 24 24 H 1.48501 * 109.47141 * 64.85674 * 21 19 17 25 25 C 1.50702 * 109.47242 * 64.99318 * 3 2 1 26 26 O 1.20824 * 119.99974 * 25.03947 * 25 3 2 27 27 O 1.34231 * 119.99726 * 205.03386 * 25 3 2 28 28 C 1.45200 * 116.99480 * 184.75457 * 27 25 3 29 29 H 1.09000 * 109.46681 * 60.00585 * 1 2 3 30 30 H 1.08997 * 109.46717 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47086 * 300.00422 * 1 2 3 32 32 H 1.08994 * 109.47761 * 239.99498 * 2 1 3 33 33 H 1.09001 * 109.47191 * 119.99290 * 2 1 3 34 34 H 1.09003 * 109.47240 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.47051 * 299.99215 * 4 3 2 36 36 H 1.08998 * 109.47410 * 59.99700 * 4 3 2 37 37 H 0.97000 * 120.00480 * 115.83053 * 5 3 2 38 38 H 1.08003 * 126.12657 * 0.02562 * 9 8 6 39 39 H 1.08007 * 120.07934 * 0.02562 * 11 10 9 40 40 H 1.08000 * 119.70078 * 179.97438 * 12 11 10 41 41 H 1.07995 * 119.68107 * 180.02562 * 13 12 11 42 42 H 1.07999 * 120.08983 * 179.97438 * 14 13 12 43 43 H 0.96997 * 120.00136 * 359.36061 * 20 19 17 44 44 H 1.09007 * 109.47335 * 64.54496 * 28 27 25 45 45 H 1.09004 * 109.46881 * 184.54040 * 28 27 25 46 46 H 1.08999 * 109.47657 * 304.54103 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 -0.1257 5 7 1.4559 2.1669 -1.1315 6 6 1.7472 1.7937 -2.3934 7 8 2.4144 0.7963 -2.5940 8 6 1.2592 2.5911 -3.5263 9 6 1.3821 2.2544 -4.8396 10 6 0.7899 3.2874 -5.6077 11 6 0.6244 3.4881 -6.9834 12 6 -0.0051 4.6128 -7.4352 13 6 -0.4847 5.5615 -6.5418 14 6 -0.3339 5.3860 -5.1829 15 6 0.3047 4.2492 -4.6991 16 7 0.5995 3.8017 -3.4291 17 6 0.2931 4.4513 -2.2637 18 1 1.0297 4.5263 -1.4776 19 6 -0.9662 5.0145 -2.0923 20 7 -1.9630 4.6408 -2.8616 21 14 -1.2407 6.3028 -0.7678 22 1 -2.6820 6.6560 -0.7120 23 1 -0.8127 5.7605 0.5466 24 1 -0.4458 7.5163 -1.0852 25 6 1.6412 2.1164 1.2876 26 8 1.4359 1.4546 2.2774 27 8 1.5142 3.4518 1.3349 28 6 1.2316 4.0416 2.6313 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8935 -0.5139 -0.8898 33 1 1.8934 -0.5137 0.8900 34 1 3.9282 2.4721 -0.1253 35 1 3.9995 0.9055 0.7161 36 1 3.8532 0.9570 -1.0571 37 1 0.8595 2.9152 -0.9726 38 1 1.8510 1.3619 -5.2269 39 1 0.9929 2.7548 -7.6857 40 1 -0.1313 4.7655 -8.4969 41 1 -0.9806 6.4452 -6.9152 42 1 -0.7099 6.1297 -4.4959 43 1 -1.8183 3.9786 -3.5555 44 1 2.0742 3.8682 3.3008 45 1 1.0739 5.1139 2.5160 46 1 0.3347 3.5854 3.0503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609169066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:16 Heat of formation + Delta-G solvation = -78.012434 kcal Electronic energy + Delta-G solvation = -31878.189824 eV Core-core repulsion = 27732.864466 eV Total energy + Delta-G solvation = -4145.325358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58466 -42.02001 -40.43704 -38.04069 -37.73086 -36.99906 -35.53739 -33.42471 -32.35328 -31.53115 -30.60641 -29.60026 -28.90610 -26.59412 -26.00202 -24.62579 -24.12655 -22.75309 -22.06684 -21.26500 -20.65893 -20.32960 -19.08197 -18.36136 -17.81690 -17.46128 -17.39210 -16.67718 -16.40525 -16.20199 -15.90892 -15.62269 -15.52904 -15.22711 -14.86564 -14.77816 -14.74945 -14.42490 -14.19030 -14.02442 -13.87395 -13.62029 -13.43810 -13.33863 -13.03633 -12.80428 -12.68736 -12.44012 -12.33949 -12.17203 -12.10828 -12.05699 -11.95319 -11.88824 -11.72001 -11.55448 -10.93838 -10.86422 -10.54878 -10.22550 -9.35132 -8.82798 -8.51808 -6.57485 0.00344 0.80875 0.96982 1.27328 1.47448 1.49471 1.55571 1.75566 2.08074 2.21229 2.44542 2.64930 2.88996 3.20252 3.35860 3.64195 3.74665 3.89891 4.10833 4.19288 4.21557 4.28093 4.33364 4.36114 4.44668 4.48383 4.54889 4.64002 4.64671 4.71002 4.72488 4.86766 4.87724 4.97385 5.05542 5.08922 5.10383 5.19374 5.23521 5.29480 5.34479 5.45938 5.72225 5.75922 5.84131 6.05323 6.08480 6.42205 6.44849 6.50401 6.86907 7.16138 7.30593 8.18844 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.005085 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.375445 B = 5505.131044 C = 7235.763961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.181 3.819 4 C -0.158 4.158 5 N -0.711 5.711 6 C 0.604 3.396 7 O -0.557 6.557 8 C -0.045 4.045 9 C -0.170 4.170 10 C -0.149 4.149 11 C -0.083 4.083 12 C -0.153 4.153 13 C -0.121 4.121 14 C -0.114 4.114 15 C 0.046 3.954 16 N -0.281 5.281 17 C -0.458 4.458 18 H 0.109 0.891 19 C -0.001 4.001 20 N -0.848 5.848 21 Si 1.111 2.889 22 H -0.280 1.280 23 H -0.243 1.243 24 H -0.263 1.263 25 C 0.473 3.527 26 O -0.507 6.507 27 O -0.362 6.362 28 C 0.023 3.977 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.419 0.581 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 0.334 5.303 7.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.094 3.906 4 C -0.216 4.216 5 N -0.372 5.372 6 C 0.393 3.607 7 O -0.437 6.437 8 C -0.160 4.160 9 C -0.198 4.198 10 C -0.154 4.154 11 C -0.101 4.101 12 C -0.171 4.171 13 C -0.141 4.141 14 C -0.134 4.134 15 C -0.068 4.068 16 N 0.053 4.947 17 C -0.585 4.585 18 H 0.127 0.873 19 C -0.211 4.211 20 N -0.474 5.474 21 Si 0.927 3.073 22 H -0.205 1.205 23 H -0.167 1.167 24 H -0.188 1.188 25 C 0.316 3.684 26 O -0.395 6.395 27 O -0.278 6.278 28 C -0.070 4.070 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.265 0.735 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.144 0.856 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.868 0.580 6.597 7.670 hybrid contribution 0.564 -0.649 -0.488 0.989 sum 4.433 -0.069 6.109 7.548 Atomic orbital electron populations 1.21707 0.95582 1.02663 1.00499 1.21881 0.96524 0.92618 1.04732 1.20498 0.96878 0.92588 0.80614 1.22202 0.90028 1.03873 1.05488 1.46651 1.49907 1.36641 1.03985 1.17016 0.78564 0.83203 0.81910 1.90640 1.41071 1.26440 1.85574 1.20563 1.10292 0.89850 0.95249 1.20676 1.07841 1.00857 0.90415 1.18391 1.05978 0.96587 0.94408 1.20560 0.99051 0.98358 0.92180 1.20808 1.01505 0.94521 1.00309 1.21066 1.01156 1.00565 0.91326 1.20214 1.01096 0.95897 0.96173 1.18904 1.05172 0.97900 0.84858 1.40295 1.37886 1.12117 1.04370 1.20775 1.02595 1.39894 0.95194 0.87329 1.28141 0.89837 0.99929 1.03240 1.70753 1.32685 1.26558 1.17429 0.83039 0.77124 0.73521 0.73579 1.20485 1.16697 1.18759 1.23545 0.72909 0.81511 0.90466 1.90630 1.46078 1.65671 1.37099 1.86567 1.80849 1.22224 1.38124 1.23680 1.02260 0.99931 0.81091 0.94861 0.90440 0.93402 0.89175 0.88487 0.91466 0.88766 0.89381 0.73531 0.83456 0.84359 0.83194 0.84173 0.88331 0.91838 0.90235 0.85647 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.49 71.98 0.68 -4.05 16 2 C -0.12 -3.70 4.44 30.60 0.14 -3.56 16 3 C 0.18 5.92 0.71 2.86 0.00 5.92 16 4 C -0.16 -4.55 8.32 71.98 0.60 -3.95 16 5 N -0.71 -27.59 3.83 -430.05 -1.65 -29.23 16 6 C 0.60 26.11 7.16 86.51 0.62 26.73 16 7 O -0.56 -24.07 13.14 -4.25 -0.06 -24.13 16 8 C -0.05 -2.15 6.77 39.91 0.27 -1.88 16 9 C -0.17 -7.68 10.55 22.63 0.24 -7.44 16 10 C -0.15 -6.66 6.16 -21.34 -0.13 -6.79 16 11 C -0.08 -3.03 10.06 22.31 0.22 -2.81 16 12 C -0.15 -5.05 9.97 22.03 0.22 -4.83 16 13 C -0.12 -4.44 10.02 22.33 0.22 -4.22 16 14 C -0.11 -5.12 8.60 22.38 0.19 -4.93 16 15 C 0.05 2.21 5.36 39.06 0.21 2.42 16 16 N -0.28 -13.92 2.55 -331.35 -0.85 -14.76 16 17 C -0.46 -21.96 7.54 84.09 0.63 -21.32 16 18 H 0.11 5.00 6.58 -2.91 -0.02 4.98 16 19 C 0.00 -0.04 4.42 84.95 0.38 0.33 16 20 N -0.85 -44.13 12.41 21.67 0.27 -43.86 16 21 Si 1.11 40.03 29.96 68.60 2.06 42.09 16 22 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.24 -7.53 7.11 99.48 0.71 -6.82 16 24 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 25 C 0.47 15.02 5.96 71.24 0.42 15.44 16 26 O -0.51 -16.53 14.95 21.97 0.33 -16.20 16 27 O -0.36 -10.99 9.82 -51.43 -0.51 -11.50 16 28 C 0.02 0.50 10.64 113.37 1.21 1.71 16 29 H 0.03 1.23 7.46 -2.39 -0.02 1.21 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.55 6.87 -2.39 -0.02 1.53 16 32 H 0.09 2.98 6.43 -2.39 -0.02 2.97 16 33 H 0.10 2.64 7.69 -2.39 -0.02 2.62 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.81 6.05 -2.39 -0.01 2.79 16 37 H 0.42 17.36 4.09 -92.71 -0.38 16.98 16 38 H 0.15 6.04 8.06 -2.91 -0.02 6.01 16 39 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.10 4.69 6.98 -2.91 -0.02 4.67 16 43 H 0.27 15.14 6.64 -92.71 -0.62 14.52 16 44 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.06 1.42 7.98 -2.39 -0.02 1.40 16 Total: -1.00 -60.74 373.88 6.52 -54.22 By element: Atomic # 1 Polarization: 55.81 SS G_CDS: 0.79 Total: 56.61 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 6.13 Total: -13.23 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -2.22 Total: -87.86 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.23 Total: -51.83 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.06 Total: 42.09 kcal Total: -60.74 6.52 -54.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609169066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds