Wall clock time and date at job start Wed Apr 1 2020 02:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47093 * 2 1 4 4 C 1.53002 * 109.47477 * 240.00109 * 2 1 3 5 5 C 1.50700 * 109.47293 * 119.99861 * 2 1 3 6 6 C 1.38952 * 119.67427 * 0.02562 * 5 2 1 7 7 C 1.36428 * 120.61759 * 180.28005 * 6 5 2 8 8 C 1.40124 * 119.83138 * 359.49207 * 7 6 5 9 9 C 1.41547 * 133.37272 * 180.17785 * 8 7 6 10 10 C 1.35947 * 107.72500 * 180.29390 * 9 8 7 11 11 C 1.46895 * 125.44253 * 180.02562 * 10 9 8 12 12 O 1.21576 * 119.99980 * 359.97386 * 11 10 9 13 13 O 1.34847 * 120.00113 * 179.97438 * 11 10 9 14 14 C 1.45194 * 116.99970 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47218 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00137 * 359.97438 * 15 14 13 17 17 N 1.34784 * 120.00182 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99746 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00597 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99859 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00090 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47262 * 89.99720 * 22 20 18 24 24 H 1.48496 * 109.47024 * 209.99621 * 22 20 18 25 25 H 1.48500 * 109.47220 * 329.99554 * 22 20 18 26 26 N 1.38189 * 109.11683 * 359.97438 * 10 9 8 27 27 H 0.97000 * 125.61011 * 180.02562 * 26 10 9 28 28 C 1.37469 * 108.78338 * 0.02562 * 26 10 9 29 29 C 1.37662 * 119.67524 * 180.02562 * 5 2 1 30 30 H 1.08993 * 109.47450 * 299.99648 * 1 2 3 31 31 H 1.08994 * 109.47415 * 60.00326 * 1 2 3 32 32 H 1.09005 * 109.47110 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47224 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47305 * 300.00133 * 3 2 1 35 35 H 1.09001 * 109.46991 * 59.99879 * 3 2 1 36 36 H 1.09005 * 109.46938 * 300.00091 * 4 2 1 37 37 H 1.08994 * 109.47153 * 59.99404 * 4 2 1 38 38 H 1.08997 * 109.47443 * 179.97438 * 4 2 1 39 39 H 1.08002 * 119.68722 * 359.97438 * 6 5 2 40 40 H 1.08000 * 120.08265 * 179.74013 * 7 6 5 41 41 H 1.08008 * 126.13578 * 0.25849 * 9 8 7 42 42 H 1.09001 * 109.47239 * 299.99246 * 14 13 11 43 43 H 1.08998 * 109.48035 * 59.99265 * 14 13 11 44 44 H 0.96999 * 119.99819 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00282 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.09482 * 0.02562 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1234 -1.2363 2.1404 7 6 1.5570 -1.8781 3.2636 8 6 2.9310 -2.0191 3.4993 9 6 3.6826 -2.6183 4.5384 10 6 4.9997 -2.4492 4.2471 11 6 6.1214 -2.9231 5.0686 12 8 5.9059 -3.5214 6.1048 13 8 7.3903 -2.6946 4.6735 14 6 8.4485 -3.1919 5.5343 15 6 9.7874 -2.8463 4.9354 16 8 9.8443 -2.2409 3.8859 17 7 10.9218 -3.2109 5.5653 18 6 12.1399 -2.8961 5.0206 19 1 12.1905 -2.3562 4.0866 20 6 13.3094 -3.2724 5.6698 21 7 13.2479 -3.9297 6.8060 22 14 14.9691 -2.8440 4.9273 23 1 15.4098 -1.5186 5.4315 24 1 15.9649 -3.8761 5.3124 25 1 14.8521 -2.7968 3.4476 26 7 5.1146 -1.7612 3.0542 27 1 5.9475 -1.5126 2.6236 28 6 3.8545 -1.4871 2.5780 29 6 3.3872 -0.8318 1.4419 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 0.0639 -1.1318 1.9593 40 1 0.8429 -2.2800 3.9671 41 1 3.2816 -3.1194 5.4071 42 1 8.3614 -2.7331 6.5192 43 1 8.3616 -4.2743 5.6289 44 1 10.8764 -3.6954 6.4044 45 1 14.0642 -4.1921 7.2594 46 1 4.0857 -0.4193 0.7289 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:54 Heat of formation + Delta-G solvation = -77.731549 kcal Electronic energy + Delta-G solvation = -28409.450461 eV Core-core repulsion = 24264.137283 eV Total energy + Delta-G solvation = -4145.313178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.80724 -40.15372 -38.87118 -38.13059 -36.20258 -35.37945 -34.05943 -32.17795 -31.44253 -30.12547 -29.26564 -28.20889 -27.56237 -27.52490 -25.06258 -24.08369 -22.38331 -21.88747 -20.36966 -19.65734 -19.50493 -18.53500 -18.13088 -17.11975 -16.49509 -16.47713 -16.12619 -15.75401 -15.05221 -14.90257 -14.70544 -14.47084 -14.44039 -14.06712 -13.97110 -13.88938 -13.79170 -13.54370 -13.05841 -12.76741 -12.59686 -12.40096 -12.14976 -12.03850 -12.02210 -11.77437 -11.70089 -11.66536 -11.18001 -11.16849 -11.10846 -10.76719 -10.72273 -10.53578 -10.47824 -10.34085 -10.02673 -9.65645 -8.59848 -8.42815 -8.13597 -7.95421 -6.54533 -3.96841 0.48232 1.41943 1.78759 2.45457 2.86130 3.02378 3.09861 3.20581 3.26414 3.63631 3.67607 4.06794 4.25049 4.38097 4.54134 4.60482 4.66315 4.87064 4.93386 4.96599 5.10255 5.11102 5.11566 5.19893 5.29996 5.34136 5.37468 5.43349 5.49825 5.54201 5.55773 5.62366 5.62970 5.72752 5.74069 5.88427 5.90509 5.97472 5.97589 6.26979 6.32066 6.41754 6.43215 6.47132 6.85947 7.24590 7.43274 7.68900 7.89238 8.42657 9.01937 9.33624 9.82984 10.62480 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.001863 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.807277 B =15029.785296 C =16307.234969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.038 4.038 6 C -0.150 4.150 7 C -0.056 4.056 8 C -0.127 4.127 9 C -0.101 4.101 10 C 0.040 3.960 11 C 0.526 3.474 12 O -0.495 6.495 13 O -0.327 6.327 14 C 0.063 3.937 15 C 0.437 3.563 16 O -0.579 6.579 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.935 3.065 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 N -0.564 5.564 27 H 0.430 0.570 28 C 0.122 3.878 29 C -0.128 4.128 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.395 0.605 45 H 0.275 0.725 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.793 5.625 -9.745 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.040 4.040 6 C -0.169 4.169 7 C -0.075 4.075 8 C -0.131 4.131 9 C -0.127 4.127 10 C -0.068 4.068 11 C 0.370 3.630 12 O -0.383 6.383 13 O -0.242 6.242 14 C -0.015 4.015 15 C 0.222 3.778 16 O -0.463 6.463 17 N -0.187 5.187 18 C -0.433 4.433 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 N -0.167 5.167 27 H 0.270 0.730 28 C 0.010 3.990 29 C -0.149 4.149 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.176 0.824 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.229 0.771 45 H 0.084 0.916 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.408 5.777 -10.020 27.917 hybrid contribution 1.431 -0.156 0.292 1.468 sum -23.977 5.620 -9.728 26.479 Atomic orbital electron populations 1.21961 0.94011 1.02082 1.01971 1.19507 0.95783 0.95063 0.92543 1.21915 1.01324 0.94500 1.01940 1.21915 1.01324 1.00352 0.96089 1.19493 0.91960 0.97043 0.95487 1.20659 0.99747 1.01540 0.94946 1.20374 0.92884 0.97248 0.96950 1.18140 0.93580 1.04953 0.96442 1.20895 0.89552 1.02341 0.99921 1.19045 0.92719 1.05289 0.89762 1.20030 0.82498 0.76953 0.83537 1.90898 1.85560 1.38512 1.23322 1.86596 1.14160 1.72451 1.50971 1.22810 0.85165 1.00293 0.93192 1.19274 0.84228 0.86671 0.87642 1.90550 1.86699 1.45060 1.23998 1.41697 1.04277 1.49923 1.22804 1.19722 0.81294 1.34710 1.07564 0.87607 1.25327 1.00140 0.96431 0.95821 1.69611 1.30034 1.38102 1.15802 0.85786 0.80519 0.78146 0.79430 1.20229 1.20757 1.19288 1.42046 1.07602 1.47831 1.19254 0.72992 1.18315 0.83988 1.00269 0.96385 1.19848 0.95442 1.03338 0.96254 0.92125 0.92415 0.92127 0.92332 0.92330 0.92358 0.92358 0.92332 0.92331 0.85402 0.85675 0.82371 0.89202 0.89206 0.77091 0.91554 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 7.12 37.16 0.26 -0.51 16 2 C -0.03 -0.19 0.85 -155.66 -0.13 -0.33 16 3 C -0.14 -0.90 8.28 37.16 0.31 -0.59 16 4 C -0.14 -0.90 8.28 37.16 0.31 -0.59 16 5 C -0.04 -0.33 4.78 -104.57 -0.50 -0.83 16 6 C -0.15 -1.26 8.89 -39.97 -0.36 -1.61 16 7 C -0.06 -0.52 10.06 -39.53 -0.40 -0.92 16 8 C -0.13 -1.48 6.16 -106.93 -0.66 -2.14 16 9 C -0.10 -1.26 10.53 -39.14 -0.41 -1.67 16 10 C 0.04 0.57 6.99 -82.32 -0.58 -0.01 16 11 C 0.53 8.67 7.94 34.23 0.27 8.94 16 12 O -0.49 -8.76 16.63 -19.32 -0.32 -9.08 16 13 O -0.33 -6.03 9.76 -47.58 -0.46 -6.50 16 14 C 0.06 1.18 5.96 36.00 0.21 1.39 16 15 C 0.44 10.38 7.86 -10.98 -0.09 10.29 16 16 O -0.58 -15.77 16.08 -14.11 -0.23 -16.00 16 17 N -0.55 -13.74 5.29 -10.96 -0.06 -13.79 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -23.78 13.05 55.50 0.72 -23.06 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 N -0.56 -7.20 6.19 -7.37 -0.05 -7.25 16 27 H 0.43 5.16 8.96 -40.82 -0.37 4.79 16 28 C 0.12 1.45 7.25 -83.97 -0.61 0.84 16 29 C -0.13 -1.28 8.71 -39.42 -0.34 -1.62 16 30 H 0.06 0.32 7.49 -51.93 -0.39 -0.07 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.32 7.50 -51.93 -0.39 -0.07 16 33 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.39 7.36 -51.93 -0.38 0.01 16 39 H 0.13 0.81 5.84 -52.49 -0.31 0.50 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 43 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.12 1.07 7.05 -52.49 -0.37 0.70 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -31.93 390.73 -8.69 -40.62 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.22 Total: 10.89 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.94 Total: 2.78 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.62 Total: -44.10 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.01 Total: -31.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.93 -8.69 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.112 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds